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Gene: Prrc2c (proline-rich coiled-coil 2C) Rattus norvegicus

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Symbol:

Prrc2c

Name:

proline-rich coiled-coil 2C

RGD ID:

1566064

Description:

Predicted to be involved in hematopoietic progenitor cell differentiation and stress granule assembly. Orthologous to human PRRC2C (proline rich coiled-coil 2C); INTERACTS WITH 17beta-estradiol; 3-chloropropane-1,2-diol; amitrole.

Type:

pseudo (Ensembl: protein-coding)

RefSeq Status:

VALIDATED

Previously known as:

BAT2 domain containing 1; Bat2d; Bat2d1; LOC360865; RGD1566064; similar to KIAA1096 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRRC2C (proline rich coiled-coil 2C)	HGNC	NCBI, Panther
Mus musculus (house mouse):	Prrc2c (proline-rich coiled-coil 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prrc2c (proline rich coiled-coil 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRRC2C (proline rich coiled-coil 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRRC2C (proline rich coiled-coil 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prrc2c (proline rich coiled-coil 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRRC2C (proline rich coiled-coil 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRRC2C (proline rich coiled-coil 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prrc2c (proline rich coiled-coil 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Prrc2c (proline rich coiled-coil 2C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PRRC2C (proline rich coiled-coil 2C)	Alliance	DIOPT (HGNC)
Homo sapiens (human):	PRRC2C (proline rich coiled-coil 2C)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Prrc2c (proline-rich coiled-coil 2C)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F52G3.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	prrc2c	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	77,537,226 - 77,606,926 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	77,537,814 - 77,607,001 (-)	Ensembl				GRCr8
mRatBN7.2	13	75,003,995 - 75,073,701 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	75,004,010 - 75,073,643 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	77,581,826 - 77,651,517 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	78,886,154 - 78,955,626 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	76,146,021 - 76,215,493 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	80,544,789 - 80,614,925 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	85,438,659 - 85,507,560 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	78,332,572 - 78,400,635 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	74,753,822 - 74,823,520 (-)	NCBI		Celera
Cytogenetic Map	13	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,6-dimethoxyphenol (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

clobetasol (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

diuron (EXP,ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

Enterolactone (ISO)

ethanol (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furfural (ISO)

geldanamycin (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

kojic acid (ISO)

methamphetamine (ISO)

methylmercury chloride (ISO)

miconazole (ISO)

mitomycin C (ISO)

N-methyl-4-phenylpyridinium (ISO)

nicotine (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (ISO)

phosphorus atom (ISO)

phosphorus(.) (ISO)

propiconazole (ISO)

quercetin (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

Soman (EXP)

tamibarotene (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

thiram (ISO)

titanium dioxide (ISO)

torcetrapib (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hematopoietic progenitor cell differentiation (IBA,ISO)

stress granule assembly (ISO)

Cellular Component

cytosol (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17577209	PMID:19946888	PMID:21700703	PMID:22658674	PMID:22681889	PMID:24029230	PMID:29395067	PMID:31505169

Genomics

Comparative Map Data

Prrc2c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	77,537,226 - 77,606,926 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	77,537,814 - 77,607,001 (-)	Ensembl				GRCr8
mRatBN7.2	13	75,003,995 - 75,073,701 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	75,004,010 - 75,073,643 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	77,581,826 - 77,651,517 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	78,886,154 - 78,955,626 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	76,146,021 - 76,215,493 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	80,544,789 - 80,614,925 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	85,438,659 - 85,507,560 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	78,332,572 - 78,400,635 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	74,753,822 - 74,823,520 (-)	NCBI		Celera
Cytogenetic Map	13	q22	NCBI

PRRC2C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	171,485,530 - 171,593,511 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	171,485,530 - 171,593,511 (+)	Ensembl			hg38	GRCh38
GRCh37	1	171,454,669 - 171,562,650 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	169,721,290 - 169,829,273 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	168,186,323 - 168,294,307	NCBI
Celera	1	144,564,070 - 144,672,045 (+)	NCBI		Celera
Cytogenetic Map	1	q24.3	NCBI
HuRef	1	142,678,442 - 142,785,919 (+)	NCBI		HuRef
CHM1_1	1	172,876,753 - 172,984,741 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	170,841,969 - 170,949,975 (+)	NCBI		T2T-CHM13v2.0

Prrc2c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	162,499,354 - 162,568,125 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	162,498,294 - 162,568,125 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	162,671,785 - 162,740,560 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	162,670,725 - 162,740,556 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	164,601,916 - 164,670,687 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	164,507,398 - 164,577,231 (-)	NCBI		MGSCv36	mm8
Celera	1	165,118,558 - 165,187,217 (-)	NCBI		Celera
Cytogenetic Map	1	H2.1	NCBI
cM Map	1	70.3	NCBI

Prrc2c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	12,108,097 - 12,163,587 (+)	Ensembl
ChiLan1.0	NW_004955406	12,087,072 - 12,165,266 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRRC2C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	78,161,072 - 78,270,961 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	77,835,437 - 77,945,312 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	146,979,651 - 147,089,506 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	150,693,780 - 150,801,477 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	150,693,780 - 150,801,477 (+)	Ensembl			panPan2	panpan1.1

PRRC2C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	27,372,677 - 27,474,790 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	27,374,318 - 27,474,785 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	26,894,401 - 26,996,522 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	27,173,835 - 27,276,102 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	27,173,835 - 27,276,068 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	27,025,425 - 27,127,575 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	27,059,771 - 27,161,892 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	27,302,149 - 27,404,107 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Prrc2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	97,730,571 - 97,810,529 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	15,577,312 - 15,657,404 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	15,577,323 - 15,657,349 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRRC2C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	113,973,325 - 114,067,553 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	113,973,285 - 114,067,555 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	125,431,794 - 125,531,443 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRRC2C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	57,509,935 - 57,608,849 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666055	59,138,955 - 59,244,658 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prrc2c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	10,100,209 - 10,183,971 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	10,098,536 - 10,183,409 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Prrc2c
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	41,929,247 - 41,996,751 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Prrc2c
686 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	329
Count of miRNA genes:	117
Interacting mature miRNAs:	127
Transcripts:	ENSRNOT00000004410, ENSRNOT00000004513, ENSRNOT00000030419
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH143551

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	13	85,486,209 - 85,487,771	NCBI	Rnor5.0
RGSC_v3.4	13	78,379,288 - 78,380,849	UniSTS	RGSC3.4
Celera	13	74,802,124 - 74,803,685	UniSTS
Cytogenetic Map	13	q22	UniSTS

RH135136

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	13	85,474,713 - 85,474,933	NCBI	Rnor5.0
Rnor_5.0	19	25,843,021 - 25,843,241	NCBI	Rnor5.0
Rnor_5.0	5	102,705,984 - 102,706,204	NCBI	Rnor5.0
RGSC_v3.4	5	99,794,244 - 99,794,463	UniSTS	RGSC3.4
RGSC_v3.4	13	78,367,976 - 78,368,195	UniSTS	RGSC3.4
Celera	5	94,125,683 - 94,125,902	UniSTS
Celera	13	74,790,814 - 74,791,033	UniSTS
Cytogenetic Map	5	q31	UniSTS
Cytogenetic Map	13	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
7	1	18	52	67	138	95	11	51	36	32	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_111961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000094307 ⟹ ENSRNOP00000080643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	77,537,996 - 77,607,001 (-)	Ensembl
mRatBN7.2 Ensembl	13	75,005,059 - 75,073,636 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095377 ⟹ ENSRNOP00000095760

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	77,537,814 - 77,606,840 (-)	Ensembl
mRatBN7.2 Ensembl	13	75,004,010 - 75,073,636 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111495 ⟹ ENSRNOP00000077195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	77,537,996 - 77,607,001 (-)	Ensembl
mRatBN7.2 Ensembl	13	75,005,059 - 75,073,643 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162781 ⟹ ENSRNOP00000104798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	77,538,019 - 77,606,936 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172737 ⟹ ENSRNOP00000108424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	77,537,814 - 77,607,001 (-)	Ensembl

RefSeq Acc Id:

NR_111961

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	77,537,226 - 77,606,926 (-)	NCBI
mRatBN7.2	13	75,003,995 - 75,073,701 (-)	NCBI
Rnor_6.0	13	80,544,789 - 80,614,925 (-)	NCBI
Celera	13	74,753,822 - 74,823,520 (-)	NCBI

Sequence:

show sequence

TGACGTAGCACGTAGGGGCTGGCTAGCCGCCATCTTGCTTCTTTTTCCTCGCTCGCTCTCACCC
TCTCAAGAGGTAGCGAAAGTGCTTTGGCGGTTTGTACGGCCGTGGCTCGGGCTTTCCGGACCGA
GCGGCCCTGCGGACGATCTCTGGAAACTCCTTCCCCTTCCTTGCCCCTAATCCGTACCCGGCGA
ACCTCTGGAAGCGCGCAGACTTGGTTCTCACCCTGGCGGACTACTTTTAAGGGGTGTGGCAGGA
GGTTTTGGACTAGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCAAA
GGATGGGAAGAAGTACGCAACACTCAGTTTGTTTAATACTTACAAAGGAAAGTCCTTGGAAACA
CAGAAGACTACAGTTACAGCTCGACATGGGTTACAAAGTCTTGGAAAAGTTGGTATTTCACGGC
GGATGCCCCCACCTGCTAACCTGCCAAGTCTTAAAGCAGAAAACAAAGGCAATGATCCTAATGT
GAATATTGTGCCTAAAGATGGTACAGGATGGGCATCAAAACAAGAGCAGCACGAAGAAGAAAAA
GCACCAGAAGTGTCACCAGCACAGCCCAAACCTGGGGTTGCAGCTCCCCCAGAAGTAGCACCTG
CTCCCAAATCATGGGCCAGTAACAAGCAAGGTGGGCAAGGAGATGGAATCCAAGTGAATAGTCA
ATTTCAGCAGGAATTTCCCAGTCTGCAGGCAGCTGGAGATCAGGAAAAAAAAGAAAAGGAAGCA
AATGATGAAAACTATGGACCTGGACCCAGTTTACGCCCACCAAATGTTGCTTGCTGGAGAGATG
GTGGTAAGTCTGCTGGGTCACCTTCCTCTGATCAGGATGAAAAGCAACTTGCCCAGGATGAAAG
CACGGCTATAACATCAGAACAAAATGACATTCTCAAAGTGGTGGAGAAGAGGATAGCGTGTGGT
CCTCCACTGGCCAAACTGAATGGACAGCAGCCTGCCCTTGCTTCTCAGTATAGAGCTATGATGC
CTCCATATATGTTTCAGCAGTACCCAAGGATGGCCTATCCTCCTCTACATGGTCCCATGAGGTT
CCCACCTTCTCTATCGGAAACAAACAAAGGCCTTCGAGGACGAGGTCCTCCTCCTTCTTGGGCT
TCTGAACCTGAACGCCCATCCATCCTTAGTGCATCAGAATTGAAGGAGCTGGATAAATTCGATA
ACCTCGATGCTGAAGCTGATGAAGGCTGGGCAGGCGCCCAGATGGAAGTAGACTACACAGAGCA
GCTGAATTTCAGTGACGACGACGAGCAAGGCAGTACCAGTCCTAAGGGAGACAGCAGTGAGGAT
CAAACTTCAAAAACACCTGAAAGCACAGAAAACCGAAAAGAAGGAGATGAAGCTTCCAGCACTA
AGTCTTCTTCTCAGACACCTGCTCAGCCTCCAGTCACAAAAAGTCCTTATGGGAAGGGCCCGCC
ATTTAGTCAGGAGCGGACCTCATCTTCACACTTGCCACCGCCTCCCAAGTTGCTTGCACAGCAG
CATCCCCCACCTCCAGATCGACAAATGCCTGGAAGACAGGGCCCCTTTCCTTCAAAGCCTCCAG
TACCTGATACCGATGAAATATGGAAGCAAAGACGAAAACAACAGTCTGAAATATCTGCAGCAGT
GGAGCGTGCTCGTAAACGCCGTGAGGAGGAAGAGCGGAGGATGGAGGAACAGAGGAAGGCAGCG
TGTGCAGAGAAATTGAAGCAACTGGATGAGAAGCTTGGGATCATAGAAAAGCAACCCTCCCCAG
AGGAACTTAGAGAAAGGGAGAGAGAGAAGGAGCGGGAGCGGGAGAAAGAGCTTGAAAAAGAAAA
AGAACAGGAACGGGAGAGGGAGCGGGAGCTTGAGAAAGAGCAGGAAAAGCAAAGAGAAATGGAG
AGGGCGAGACAGCAAGAGAAAGAGTTAGAACAACAGAGGGAAAAGGAGCAGGAACTACAAAGGC
TGAAAGAACAAGAGAAGGAGGGCGAGTTGAAGGAAAAGGAAAGAGAGGAAAAAGTTGAACCCCA
AGAACCTAATGTAGAGCCTGCAACAGAAAACCAAGAAAGTGAAAACAACTGTAAGAAAGAAGAA
CAACCAGTTTTCACTAGACAGGACAGCAATCGAAGTGAAAAGGAGACCACACAAGTGGTACAGG
AAACAGAACCTGAGTCAGGGTCTCAACCCCGACCTGCTGTATTATCTGGCTATTTCAAACAGTT
TCAGAAATCATTGCCACCACGATTTCAGCGGCAGCAGGAGCAAATGAAACAGCAACAGTGGCAG
CAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAAGGCGTACTTCCACAGACTGTGC
CTTCACAGCCGTCTAATGGTTCAGTCCCTCCTCCACCACACAGACCCCTTTATCAGCCAATGCA
GCCCCACCCCCAACATCTGGCTTCTATGGGTTTTGACCCAAGGTGGCTCATGATGCAGCCCTAT
ATGGATCCACGAATGATATCAGGAAGGCCTGCTATGGACATCCCACCCATACATCCTGGAATGA
TTCCTCCTAAGCCGTTAATCAGAAGAGACCAGATGGAAGGGTCGCCTAACACCTCTGAATCGTT
TGAGCACATGGCTCGATCTGCGAGAGATCATGGAATTTCTCTTTCTGAGCCTCGAGTGATGTGG
GGGTCAGACCCCTATCATGCTGAGCCTCAGCGGGCAGCTGCTTCCAAGTCTACTGAAGAAACTG
GGGATGCAAGGCCTGAAACTGCAGTGGACCATGAGCATATGACTGCTACTTATCCTGTAGAACA
GAGTCAGTTAGAAACCCACTCAAAAACAGATGTTGCTAGAGACTCAGCTGAAACAGAAGGACAA
AAGTGTTTAAGCAGATCCGTGGAAGATGTAAGACCTCACCATGTTGATACAAACAGTCAGTCTG
CTTGTTTTGATGTAATCGATCAAAAGAGCCTACCTACTCCTACAGACGAGCGGATCTCTGCACT
GGAAAGTCAACCTGCCCGAAAAAGAAGTGTTTCCCACGGCTCTAACCATGCTCAGAATGCAGAG
GAACAAAGAAATGAGCCATCTGTCAGCATTCCTAAGGTCACCAGCAGATGTACTGATTCCAAAG
AAACCATAGAAAAGCCAGAGGAGAAGCCAAGAAAAGATGGCTTTCTGCGATCTTCTGAAGGACC
TAAACCAGAGAAAGTCTATAAATCTAAATCAGAAACTCGGTGGGGTCCAAGACCAAGCTCTAAC
AGAAGAGAGGAAGGTAATGACAGGCCTGTGAGAAGGTCGGGTCCCATTAAAAAACCTGTACTTA
GAGATATGAAAGAGGAGCGGGAACAGAGGAAGGAGAAAGAAGGTGAAAAGATTGAAAAGGTCAC
TGAAAAAGTTGTTAAAGCAGAAAAAACAGAAAAGAAAGATCTTCCTCTTCCTCTACCACCTCCA
GTTCCAGTTCAGCCCCAGTCATTGGTCTCACCACCAGTACAGCCAGAACCAGAGAAACTACCCT
CAACAGAAACGTCAGCTTTGACTCAGAAGCCATCTCAGGATGAGAAACCTGTGGAACCTGTTGT
CAGTGTCCAGGTAGAACCTATAGTTAAAACTACAAACCAACAAACTGTTGCAGCACCAACAGTC
AAAGAAGAGAAGCCACCTGAGAAAGTCATCAACAAAGATGTTGGAGTAGAAAGACCTCGCCCAG
ACTCTAGAGTGGCAGTGAAAAAGGAGCCACCTTTACCTGCTAGGCCCTATTGGAAGGAGGCCAG
AGATAGAGATTGGTTTCCAGACCAAGGGTACCGAGGCAGGGGCAGAGGAGAGTATTACTCCAGA
GGTCGGAGCTACAGAGGCTCTTACGGAGGGCGTGGCAGAGGTGGTAGAGGGCACACCCGAGATT
ACCCTCAGTATAGGGACAGTAAGCCAAGAGCAGAGCATGTGCCTTCCGGACCTCCCAGACAAAG
AGAAGAGAGCGAGACACGCAGTGAGAGTTCTGATTTTGAAGTTGTTCCCAAAAGAAGGCGACAG
AGGGGCTCAGAGACCGACACAGACAGTGAAGTTCATGAGAGTGCAAGTGACAAGGATAGTTTAA
GCAAAGGGAGACTTCCCCTAAGAGAGGAACGGTCCGAAAACAAAAAACCTGTCAAGCCACAGCC
GTCTTTTAAGCCTGAAAACCATGTCCGAATAGATAATAGGCAATTAGAGAAACCTTACATAAGA
GATGAGGAGAAATCTAAACCAGGTTTCCTTCCAAAAGGGGAGCCTACAAGGCGTGGCAGAGGAG
GAACATTCAGACGAGGTGGGAGGGATCCTGGAGGCCGGCCATCCCGCCCTGCTACCTTAAGAAG
ACCGTCGGCTTATCGGGACAATCAGTGGAACCCAAGGCAGGCAGAACCTCCTAAACCTGAGGAT
GGAGAGCCACCAAGAAGACACGAGCAGTTTATGCCCATACCTGCAGATAAACGACCTCCAAAAT
TTGAGCGAAAATTTGACCCAGCTAGAGAGAGGCCCCGAAGGCAGCGTCCTACCCGACCACCAAG
GCAAGATAAGCCACCTAGATTTAGACGGCTGAGAGAGAGAGAGAGGCTGCTTCAAAGACAAATG
AGGTGTTGGTACCCACAAATGGCACAGTTAATAATGTTGTTCAAGAACCAGTTAATCCACCTGT
GGACATTTCGGGAAATAAGACACCAGATTTGTCTAACCAGAACTCTTCGGATCAGGCAAATGAA
GAATGGGAAACAGCCTCTGAAAGCAGTGATTTTAATGAGAGAAGAGAGAGGGACGAGAAAAAAA
ATGCTGATATGAGTTCACAAGCAGTTGTAAAGACTGGAGAAAGTGTTTTGCCTCCAAAAAGGGA
AATAGCAAAGAGAAGTTTTTCTAGTCAGAGACCTGGAGTTGATCGCCAGAATCGTCGTGGCAAC
AATGGTCCACCCAAATCAGGAAGGAATTTCTCAGGTCCTAGGAATGAAAGAAGAAATGGCCCAC
CATCAAAAAGTGGGAAGAGAGGGCCATTTGATGAGCAGTCCTCAGGCACAGCTGGTGTTGACCC
TGTCAGTGGTAACTCTGCACATCACCAAGAAGGGGTGCCTAACGGTGCAGGACAAAAGAATTCC
AAGGATGCTACTGGGAAAAAGAGAGAAGATACCAAACCCGGCCCTAAAAAACCAAAAGAGAAAG
TAGATGCTCTCTCACAGTTTGATCTAAACAATTATGCAAGTGTTGTTATCATTGATGATCATCC
TGAAGTAACTGTAGTTGAAGACCCCCAGTCAAATTTGAATGATGATGGCTTTACTGAAGTTGTA
TCTAAAAAACAGCAAAAGCGGCTACAGGATGAGGAACGCCGAAAGAAGGAAGAGCAAGTTGTAC
AGGTATGGAGCAAAAAAAATATAGGTGAAAAAGGAAGAAGTCAGACTTCTAAGCTTCCTCCAAG
GTTTGCCAAAAAACAAGCTACTGGGACTCAGCAAGTTCAGGCCCCACCCTCTGCACCACTTCCA
GTCTCTTCCTCAGCTCCAGCCTTAACATCCCTGGCACCTGCAGTTCCTGCATCCACCCCAGCTC
CAGTTCCTGTGCTGGCATCAGCCACAGCTCTAGTTCCAGTGTCAACCCCAGCTCCGGTTCTGAC
TTCATGCCCAGCTCCAGTTCCAGCCTCAGCCTCAGCTCCTGTTCCAGCACCCACTTCATCTCCA
GTCACAGCCTCTTCCTCATCCCAGCCGTCAGTCCCGGCTCCAACTCCTATCCTGGCCTCAGCCT
CAACTACAGTCTCCATCCCTATTCTCGCCTCTGCTTCGATTCCTATCCTTGCTTCAGCCCTAGC
ACCAGCTTCAGTTTCTTCTCCACCCCCAGTGGTCTCAGCTACAGCCGTGCCATCTATTTCAACA
CCAGCTGCCCCAGCCTTGGCCCCAACAGCCTCAGTTCCACTTGCCCCAGCCTCAGCTGCATCCA
CTGCCCCAACCCCGGCCTCAACGGTACAGACGCAGACACAGAACCACAAACCAGTCCAGAGTCC
ACTTCCACCTTCAACACCATCTTCAAAGCAGCCACCACCTTCGATTAGATTACCTTCAGCTCAG
ACATCTAATGGCACAGATTATGTAGCCACTGGGAAATCCATGCAGACTTCACAGTCACACAGCT
CTCTAACAGCTGAGTTATGGGATAACAAAGTGACTGCTCCAGCTGTGCTCAATGACATTTCTAA
AAAATTAGGTCCTATTAGTCCACCACAGCCACCTTCAGTCAGTGCATGGAATAAGCCCTTAACA
TCATTTGGATCAGCAACATCATCAGAGGGAACAAGAAATGGTCAAGAGAGTGGTGTTGAAATTG
GAATTGACACAATTCAGTTTGGTGCTCCAGCCTCAAATGGGAATGAAAATGAGGTGGTTCCTGT
GCTTTCAGAGAAACCAACTGACAAAGTTCCTGAACCTAAAGAGCAGCGTCAGAAACAGCCTCGG
GCAGGGCCCATTAAAGCTCAGAAGCTTCCAGACTTGAGTCTGGTAGAAAACAAAGAACATAAAC
CTGGTCCCATTGGAAAGGAACGATCATTAAAAAATAGAAAAGTGAAAGATGCCCAACAGGTTGA
ACCAGAAGGACAAGAGAAACCCAGCCCGGCTGCGGTCAGAAGCACAGACCCTGGAACAGCAAAG
GAAACCAAAGCAGTCTCAGAAATGTCTGCTGAGATCGGAGCAATGATCTCGGTGTCCGCTCCAG
AATATGGCACTGATGCAAAGGTAGTCTGTAACAGACTACACTACACCTTCCTCTTCTCTGCCTA
ACACTGTGGCTACTAATAATGCAAAGATGGAGGATACTTTGGTTAATAATGTGCCCCTGCCCAG
CAGCCTTCCCCTCCCTAAGAGGGAGGCCATGCAACAGAGCTCCAGCCTGACCTCAGTTCCTCCT
ACTACTTTCAGCCTCACCTTCAAGATGGAGTCTGCACGGAAGGCATGGGAAAATTCTCCAAATC
TAAGGGAAAAGGGGTCCCCAGTCACTTCTACAGCACCTCCAATTGTGAGTGGCGTCAGCAGTAG
TGCCAGTGGACCAAGCACTGCTAATTACAACTCATTTTCCAGTGCATCAATGCCTCAGATCCCA
GTTGCCTCGGTCACTCCTACAGCATCGCTATCAGGAGCTGGTACTTACACTACCTCTTCATTGA
GTACAAAATCTACAACCACGTCGGACCCTCCTAATATTTGTAAAGTAAAACCCCAACAATTACA
GACCAGCAGCTTGCCTTCTGCCAGTCATTTTTCACAGTTAAGCTGTATGCCTTCCCTTATTGCA
CAGCAACAGCAGAGTCCACAAGTTTATGTGTCTCAGTCGGCAGCAGCTCAAATCCCAGCCTTCT
ATATGGATACAAGTCATTTATTCAATACCCAGCATGCGCGATTGGCTCCGCCATCCCTGGCCCA
GCAGCAGGGCTTCCAACCTGGTCTGTCGCAGCCAACATCCGTTCAGCAGATTCCAATCCCTATC
TATGCCCCACTACAAGGGCAGCATCAAGCCCAGCTGAGTTTGGGGGCTGGGCCTGCTGTTTCCC
AGGCTCAGGAATTATTCAGTTCTTCAATTCAACCATATAGGTCGCAGCCAGCCTTTATGCAAAG
CAGCCTTTCCCAGCCTTCTGTGGTCCTCTCTGGTACAGCTCTCCACAACTTCCCAGCAGTCCAG
CACCAGGAGCTTGCCAAGGCACAGTCAGGTCTTGCCTTTCAGCAGACTTCAAATACTCAGCCCA
TCCCTATACTGTATGAACATCAGCTGGGTCAGGCATCAGGACTAGGAAGTTCTCAGCTGATTGA
TACACATCTTCTTCAGGCAAGAGCAAATCTTACTCAAGCGTCAAATCTTTACTCTGGACAAGTA
CAGCAGCCTGGTCAGACAAATTTTTATAACACTGCCCAATCACCAAGTGCTCTCCAGCAGGTTA
CAGTACCATTACCAGCATCCCAGCTTTCCTTGACTAATTTTGGATCTACAGGACAGCCTCTGAT
TGCCTTGCCTCAGACACTTCAGCCCCAGTTACAGCACACAACCCCACAAGCACAGGCTCAGAGC
TTGAGCCGTCCTGCCCAAGTAAGCCAGCCTTTCAGAGGGTTAATCCCTGCTGGAACGCAGCATG
GCATGATGGCAACCACAGGAAAAATGTCTGAAATGGAACTAAAAGCCTTTGGGAGTGGCATTGA
TATCAAACCAGGAACACCACCAATTGGTGGTCGAAGCACCACGCCAACATCTAGTCCATTCAGG
GCTACATCAACAAGTCCAAACAGCCAGTCTAGCAAAATGAACAGCATTGTTTATCAGAAACAGT
TCCAGTCAGCCCCTGCCACAGTGAGAATGGCACAGCCGTTTCCTGCACAGTTTGCACCCCAGAT
TCTCTCTCAGCCTAACCTGGTCCCTCCATTGGTAAGAGCCCCACATACTAACACCTTCCCAGCG
CCTGTACAGAGGCCACCAATGGCACTGGCCAGTCAGATGCCTCCTCCTCCGCTGACCACAGGCC
TCATGAGCCATGCCCGTTTGCCACCTGTAGCCAGGGGCCCTTGTGGATCACTGTCTGGAGTCAG
AGGCAATCAGGCCCAGGCTGCGCTGAAGGCTGAACAAGATATGAAGGCAAAGCAGAGAGCAGAG
GTTCTTCAGTCCACGCAGCGGTTCTTCTCTGAGCAGCAACAGAGCAAACAGATAGGAGGCAAAG
CCCAGAAAGTGGACAGTGATACAAGTAAACCTGAGACACTGAGTGACCCTCCTGGTACCTGTCA
GGAAAAAGTAGAAGAAAAGCCACCCCCTGCACCCACCATAACCACCAAACCTGTTAGAACTGGA
CCAATCAAACCTCAGGCGATCAAAACCGAAGAAACAAAATCATAAAGGCTGTGGTTTATTGAGG
GTGGGTGGGCAGGGAAAGTGAAGTCAAATAATGCCAGCAGCCACGGGGTGAAGTGATCTGTGGC
ACTGTCCTGTGAGATACACAAGGGGCATAGAGCATTTTACACTGACAGCTGCTACACCGATTAC
AACAAGGCTCCACAGGCTCGCACCTCCCGTGTAACATTTGCATCTTCGGTTGGTTTATATACAA
GTGTGCAAACAGTCTGTAAGTGCGCACAGTTTAATCTTAAGGAGCATGAAACACCAGAAGTAGG
AGAAGAGTGATAACCACAGAGTAGCTCAGCTGGACACTGGGCAGTCCCATTGCCCCATCAGCTG
TGGTTCTTTTGCTCCCTTGTGTTCTTTGGATATGTCTATGGCATTTCTAGGCTTGAAAGTAAGA
TGATGCTATCTGGTGCTGGATAGAGGAGCCTTATTTTTTATTATGGCAGCTTGCTATTTTTGTA
ACATGGTGATTTGGTTGAACACAATAAAGTACAGTAGTAACTGATCTCCCCTTCTTCCTGGATG
AGTGAGCAGATGATTAAATGTTGGTGTCAGCATCCTTGAGCATATTCAGATGAGCTTCTGCTTC
TGTTGAAAAGGATGCTGTGTTTGATTGTGGTCCGAAGCTTTGAAGCACTACTTGGCATCTCCTT
CCTTGGAGGTCTCACTGTTTAAACGTAACAGATTTGATAGCTTGTTGGTAAGGTGAGGTCCAGC
TTGTCTCCACTAGGTCATCTTCATGTGAATCCGGTGGTTATACGGTTTTGTTTTAGGGATATTT
CATTTTTTTAATAACGGTTTTAGCTGACATTCATGGAGAGAATGAATCCTTAGAACTGTGCCAC
TAGTGAAAGGAAATCCTGTCTAGAGTATGTTTCTTTACAAAGCTGTGTCACACACCATCCTTTG
GGCCCTCTGCTGGAAAAGTAGAATCAAGTCTCAAATAATGCCTTTTAAATTGTATCCTCTAGTA
TTATAGATGTAGGACAGTACTGTATCATACCTCTGTGGATGTAAAATAGCTTGTACCTGCTTTA
TGATACGTAGTAGTGACCGTGCTTTATCAGAGCTGTTTTTAATGATGTTGCTCAGAATGTTTTC
TTTCCAGATGATGATTGAGAAGCTAATTTAAAAAAAAAAAATGGTGCCAGGTACCACAAGAGTA
ACAGAACTGTGCTGTTTTCTGGGGTTTTGTTTTTTTACTTTTTTTTTTTTTTAATGGAGTGTGC
TGGATGTCTCTACAGTTTTGTTCAGATGACTGCAGAACCTGGAAAAGCTGTTGCTGCTGTTGAT
GCATAACACACTGCTATTATTGGTCTTTTTATATAAATATAAATATATATATACAGATATATAA
TTTGAATTTTTTGAAACTTTAGCTGTGCTGTCAACTTTGGAAAAAAGTATCCCCGTTTACTGTG
TTGAGTTGGCACTGTACAGAAATTAACAGCCATATTGGTCTAGAAATGTTGAACTTAAGTTTTT
TCCATTTGTACAGGGGTAACGCACTGTATTAAATATGTAAGGTCTTATCTACGTGGGTTTGATT
ACAAAAACTAATAAAGTATTCTCTAAATAATG

hide sequence

Protein Sequences


Ensembl Protein	ENSRNOP00000077195.2
	ENSRNOP00000080643.2
	ENSRNOP00000095760.2
	ENSRNOP00000104798.1
	ENSRNOP00000108424.1

Ensembl Acc Id:

ENSRNOP00000077195 ⟸ ENSRNOT00000111495

Ensembl Acc Id:

ENSRNOP00000095760 ⟸ ENSRNOT00000095377

Ensembl Acc Id:

ENSRNOP00000080643 ⟸ ENSRNOT00000094307

Ensembl Acc Id:

ENSRNOP00000108424 ⟸ ENSRNOT00000172737

Ensembl Acc Id:

ENSRNOP00000104798 ⟸ ENSRNOT00000162781

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566064	AgrOrtholog
BioCyc Gene	G2FUF-17642	BioCyc
Ensembl Genes	ENSRNOG00000068743	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000094307.2	UniProtKB/TrEMBL
	ENSRNOT00000095377.2	UniProtKB/TrEMBL
	ENSRNOT00000111495.2	UniProtKB/TrEMBL
	ENSRNOT00000162781.1	UniProtKB/TrEMBL
	ENSRNOT00000172737	ENTREZGENE
	ENSRNOT00000172737.1	UniProtKB/TrEMBL
InterPro	BAT2_N	UniProtKB/TrEMBL
	PRRC2	UniProtKB/TrEMBL
NCBI Gene	360865	ENTREZGENE
PANTHER	PROTEIN PRRC2C	UniProtKB/TrEMBL
	PTHR14038	UniProtKB/TrEMBL
Pfam	BAT2_N	UniProtKB/TrEMBL
PhenoGen	Prrc2c	PhenoGen
RatGTEx	ENSRNOG00000068743	RatGTEx
UniProt	A0A8I5Y7A0_RAT	UniProtKB/TrEMBL
	A0A8I6ANU8_RAT	UniProtKB/TrEMBL
	A0A8I6G6W8_RAT	UniProtKB/TrEMBL
	A0ABK0L4Z3_RAT	UniProtKB/TrEMBL
	A0ABK0LXS5_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-01	Prrc2c	proline-rich coiled-coil 2C	Prrc2c	proline-rich coiled-coil 2C	Data merged from RGD:149736384	737654	PROVISIONAL
2021-08-09	Prrc2c	proline-rich coiled-coil 2C			Symbol and Name status set to provisional	45752	PROVISIONAL
2011-07-28	Prrc2c	proline-rich coiled-coil 2C	Bat2d1	BAT2 domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Bat2d1	BAT2 domain containing 1	Bat2d	BAT2 domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Bat2d	BAT2 domain containing 1	RGD1566064_predicted	similar to KIAA1096 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1566064_predicted	similar to KIAA1096 protein (predicted)	LOC360865	similar to KIAA1096 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360865	similar to KIAA1096 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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