Pcdh10 (protocadherin 10) - Rat Genome Database

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Gene: Pcdh10 (protocadherin 10) Rattus norvegicus
Analyze
Symbol: Pcdh10
Name: protocadherin 10
RGD ID: 1565811
Description: Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be active in glutamatergic synapse and postsynaptic membrane. Orthologous to human PCDH10 (protocadherin 10); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361943; protocadherin-10; RGD1565811; similar to OL-protocadherin isoform
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82130,553,432 - 130,619,591 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2130,553,425 - 130,613,407 (+)EnsemblGRCr8
mRatBN7.22128,617,212 - 128,683,354 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2128,617,174 - 128,677,190 (+)EnsemblmRatBN7.2
Rnor_6.02136,992,355 - 137,017,705 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2136,993,208 - 137,014,492 (+)Ensemblrn6Rnor6.0
Rnor_5.02156,481,902 - 156,505,195 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42132,890,164 - 132,932,966 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2126,100,636 - 126,125,570 (+)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-D  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
choline  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
Cytochalasin H  (ISO)
D-glucose  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fructose  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glucose  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
Ptaquiloside  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9920663  


Genomics

Comparative Map Data
Pcdh10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82130,553,432 - 130,619,591 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2130,553,425 - 130,613,407 (+)EnsemblGRCr8
mRatBN7.22128,617,212 - 128,683,354 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2128,617,174 - 128,677,190 (+)EnsemblmRatBN7.2
Rnor_6.02136,992,355 - 137,017,705 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2136,993,208 - 137,014,492 (+)Ensemblrn6Rnor6.0
Rnor_5.02156,481,902 - 156,505,195 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42132,890,164 - 132,932,966 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2126,100,636 - 126,125,570 (+)NCBICelera
Cytogenetic Map2q26NCBI
PCDH10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384133,149,294 - 133,208,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4133,149,294 - 133,208,606 (+)Ensemblhg38GRCh38
GRCh374134,070,449 - 134,115,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364134,289,920 - 134,332,182 (+)NCBIBuild 36Build 36hg18NCBI36
Build 344134,428,074 - 134,470,336NCBI
Celera4131,409,480 - 131,451,744 (+)NCBICelera
Cytogenetic Map4q28.3NCBI
HuRef4129,799,227 - 129,841,484 (+)NCBIHuRef
CHM1_14134,046,945 - 134,089,210 (+)NCBICHM1_1
T2T-CHM13v2.04136,472,535 - 136,531,845 (+)NCBIT2T-CHM13v2.0
Pcdh10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39345,332,833 - 45,389,014 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl345,332,833 - 45,390,058 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38345,378,398 - 45,434,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl345,378,398 - 45,435,623 (+)Ensemblmm10GRCm38
MGSCv37345,182,320 - 45,238,501 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36345,474,806 - 45,479,230 (+)NCBIMGSCv36mm8
Celera345,037,595 - 45,093,756 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map320.35NCBI
Pcdh10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554289,433,478 - 9,495,305 (-)Ensembl
ChiLan1.0NW_0049554289,433,478 - 9,495,260 (-)NCBIChiLan1.0ChiLan1.0
PCDH10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23130,961,798 - 131,020,265 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14131,357,352 - 131,416,321 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04125,460,202 - 125,519,514 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14136,708,715 - 136,753,987 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4136,709,572 - 136,722,801 (+)EnsemblpanPan2panpan1.1
PCDH10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,671,750 - 8,732,663 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,691,727 - 8,731,690 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha198,845,071 - 8,906,078 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0198,734,170 - 8,795,507 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl198,734,589 - 8,794,538 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,657,959 - 8,718,822 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,018,006 - 9,078,894 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,453,748 - 9,515,017 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pcdh10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530157,631,764 - 57,693,436 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366811,002,166 - 1,040,392 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366811,001,223 - 1,058,628 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCDH10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl893,002,562 - 93,046,693 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1893,023,079 - 93,047,265 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2899,226,414 - 99,230,427 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCDH10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1780,184,414 - 80,227,184 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl780,184,388 - 80,225,757 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603759,460,966 - 59,524,125 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcdh10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477713,693,873 - 13,747,830 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477713,693,964 - 13,747,504 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pcdh10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13108,799,679 - 108,858,856 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pcdh10
103 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:189
Count of miRNA genes:127
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000040187, ENSRNOT00000064773, ENSRNOT00000066542
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)2105628029150628029Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)284056790132859658Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2124103798154505346Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
2317886Alcrsp23Alcohol response QTL 232.40.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)295142371140142371Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2120039407159440891Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2100807373145807373Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2106869825151869825Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2120039407151869825Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)293602631145807373Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
7488933Bp368Blood pressure QTL 3680.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2104957381149957381Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2120339555165339555Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2114032149150226270Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)2114440891159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1354594Despr10Despair related QTL 102e-06locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2116804572161804572Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)261051541143746880Rat

Markers in Region
RH144024  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22128,662,630 - 128,662,799 (+)MAPPERmRatBN7.2
Rnor_6.02137,038,406 - 137,038,574NCBIRnor6.0
Rnor_5.02156,527,146 - 156,527,314UniSTSRnor5.0
RGSC_v3.42132,935,211 - 132,935,379UniSTSRGSC3.4
Celera2126,145,922 - 126,146,090UniSTS
RH 3.4 Map2651.2UniSTS
Cytogenetic Map2q26UniSTS
RH138468  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22128,621,540 - 128,621,674 (+)MAPPERmRatBN7.2
Rnor_6.02136,996,840 - 136,996,973NCBIRnor6.0
Rnor_5.02156,486,388 - 156,486,521UniSTSRnor5.0
RGSC_v3.42132,893,583 - 132,893,716UniSTSRGSC3.4
Celera2126,104,862 - 126,104,995UniSTS
RH 3.4 Map2651.2UniSTS
Cytogenetic Map2q26UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 8 60 164 64 63 32 31 32 6 224 121 11 143 50 90 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000040187   ⟹   ENSRNOP00000042694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2130,553,425 - 130,613,407 (+)Ensembl
mRatBN7.2 Ensembl2128,617,174 - 128,677,190 (+)Ensembl
Rnor_6.0 Ensembl2136,993,208 - 137,008,377 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000066542   ⟹   ENSRNOP00000063045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2130,553,425 - 130,571,041 (+)Ensembl
mRatBN7.2 Ensembl2128,617,223 - 128,634,807 (+)Ensembl
Rnor_6.0 Ensembl2136,993,208 - 137,014,492 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099777   ⟹   ENSRNOP00000078085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2130,553,438 - 130,599,198 (+)Ensembl
mRatBN7.2 Ensembl2128,617,174 - 128,639,664 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113130   ⟹   ENSRNOP00000096196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2130,553,438 - 130,575,512 (+)Ensembl
mRatBN7.2 Ensembl2128,617,174 - 128,659,294 (+)Ensembl
RefSeq Acc Id: NM_001427768   ⟹   NP_001414697
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82130,553,438 - 130,599,198 (+)NCBI
RefSeq Acc Id: XM_039103633   ⟹   XP_038959561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82130,553,432 - 130,619,591 (+)NCBI
mRatBN7.22128,617,212 - 128,683,354 (+)NCBI
RefSeq Acc Id: XM_039103634   ⟹   XP_038959562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82130,553,432 - 130,578,498 (+)NCBI
mRatBN7.22128,617,213 - 128,642,266 (+)NCBI
Ensembl Acc Id: ENSRNOP00000063045   ⟸   ENSRNOT00000066542
Ensembl Acc Id: ENSRNOP00000042694   ⟸   ENSRNOT00000040187
RefSeq Acc Id: XP_038959561   ⟸   XM_039103633
- Peptide Label: isoform X1
- UniProtKB: F1M6B6 (UniProtKB/TrEMBL),   D3ZRX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959562   ⟸   XM_039103634
- Peptide Label: isoform X2
- UniProtKB: A0A8I5YC59 (UniProtKB/TrEMBL),   A6KNH6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096196   ⟸   ENSRNOT00000113130
Ensembl Acc Id: ENSRNOP00000078085   ⟸   ENSRNOT00000099777
RefSeq Acc Id: NP_001414697   ⟸   NM_001427768
- Peptide Label: precursor
- UniProtKB: A0A8I6GLZ0 (UniProtKB/TrEMBL),   A6KNH5 (UniProtKB/TrEMBL)
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6B6-F1-model_v2 AlphaFold F1M6B6 1-1034 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565811 AgrOrtholog
BioCyc Gene G2FUF-53211 BioCyc
Ensembl Genes ENSRNOG00000031974 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040187 ENTREZGENE
  ENSRNOT00000040187.6 UniProtKB/TrEMBL
  ENSRNOT00000066542.6 UniProtKB/TrEMBL
  ENSRNOT00000099777 ENTREZGENE
  ENSRNOT00000099777.2 UniProtKB/TrEMBL
  ENSRNOT00000113130 ENTREZGENE
  ENSRNOT00000113130.2 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
  Protocadherin/Cadherin-CA UniProtKB/TrEMBL
NCBI Gene 361943 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PTHR24028:SF0 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
  Cadherin_C_2 UniProtKB/TrEMBL
PhenoGen Pcdh10 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031974 RatGTEx
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin UniProtKB/TrEMBL
UniProt A0A8I5YC59 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GLZ0 ENTREZGENE, UniProtKB/TrEMBL
  A6KNH5 ENTREZGENE, UniProtKB/TrEMBL
  A6KNH6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZRX7 ENTREZGENE, UniProtKB/TrEMBL
  F1M6B6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Pcdh10  protocadherin 10  RGD1565811_predicted  similar to OL-protocadherin isoform (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565811_predicted  similar to OL-protocadherin isoform (predicted)  LOC361943  similar to OL-protocadherin isoform  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361943  similar to OL-protocadherin isoform      Symbol and Name status set to provisional 70820 PROVISIONAL