Cep120 (centrosomal protein 120) - Rat Genome Database

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Gene: Cep120 (centrosomal protein 120) Rattus norvegicus
Analyze
Symbol: Cep120
Name: centrosomal protein 120
RGD ID: 1565619
Description: Predicted to be involved in several processes, including interkinetic nuclear migration; positive regulation of cilium assembly; and regulation of centrosome duplication. Predicted to act upstream of or within several processes, including astral microtubule organization; nervous system development; and regulation of microtubule-based process. Predicted to be located in centriole. Predicted to be active in centrosome. Human ortholog(s) of this gene implicated in Joubert syndrome 31 and short-rib thoracic dysplasia 13 with or without polydactyly. Orthologous to human CEP120 (centrosomal protein 120); INTERACTS WITH amphetamine; bisphenol A; methoxychlor.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ccdc100; centrosomal protein 120kDa; centrosomal protein of 120 kDa; coiled-coil domain containing 100; LOC307302; RGD1565619; similar to hypothetical protein FLJ36090
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81849,326,266 - 49,388,380 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1849,326,266 - 49,388,243 (-)EnsemblGRCr8
mRatBN7.21847,127,979 - 47,189,964 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1847,127,981 - 47,189,964 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1849,187,874 - 49,249,626 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01849,888,749 - 49,950,492 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01847,693,830 - 47,755,574 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01848,658,495 - 48,720,570 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1848,658,495 - 48,720,472 (-)Ensemblrn6Rnor6.0
Rnor_5.01847,868,772 - 47,930,749 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41849,192,432 - 49,255,022 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1845,306,661 - 45,368,619 (-)NCBICelera
Cytogenetic Map18q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriole  (IEA,ISO)
centrosome  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17875675   PMID:17920017   PMID:21399614   PMID:25251415   PMID:27185865  


Genomics

Comparative Map Data
Cep120
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81849,326,266 - 49,388,380 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1849,326,266 - 49,388,243 (-)EnsemblGRCr8
mRatBN7.21847,127,979 - 47,189,964 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1847,127,981 - 47,189,964 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1849,187,874 - 49,249,626 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01849,888,749 - 49,950,492 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01847,693,830 - 47,755,574 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01848,658,495 - 48,720,570 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1848,658,495 - 48,720,472 (-)Ensemblrn6Rnor6.0
Rnor_5.01847,868,772 - 47,930,749 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41849,192,432 - 49,255,022 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1845,306,661 - 45,368,619 (-)NCBICelera
Cytogenetic Map18q11NCBI
CEP120
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385123,344,892 - 123,423,842 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5123,344,890 - 123,423,592 (-)Ensemblhg38GRCh38
GRCh375122,680,586 - 122,759,536 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365122,708,478 - 122,787,151 (-)NCBIBuild 36Build 36hg18NCBI36
Celera5118,636,070 - 118,714,783 (-)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5117,868,779 - 117,947,505 (-)NCBIHuRef
CHM1_15122,113,195 - 122,191,912 (-)NCBICHM1_1
T2T-CHM13v2.05123,861,091 - 123,940,041 (-)NCBIT2T-CHM13v2.0
Cep120
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391853,814,795 - 53,877,825 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1853,814,795 - 53,877,680 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381853,681,723 - 53,745,636 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1853,681,723 - 53,744,608 (-)Ensemblmm10GRCm38
MGSCv371853,841,377 - 53,904,201 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361853,807,092 - 53,869,916 (-)NCBIMGSCv36mm8
Celera1854,986,023 - 55,048,783 (-)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1829.07NCBI
Cep120
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555211,454,102 - 1,504,763 (-)Ensembl
ChiLan1.0NW_0049555211,452,514 - 1,504,763 (-)NCBIChiLan1.0ChiLan1.0
CEP120
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24118,631,708 - 118,710,732 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15116,785,371 - 116,864,399 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05118,736,158 - 118,815,194 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15124,514,996 - 124,593,259 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5124,514,996 - 124,593,259 (-)EnsemblpanPan2panpan1.1
CEP120
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,184,590 - 13,306,975 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,143,672 - 13,266,151 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1111,965,568 - 12,088,044 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01113,891,065 - 14,012,128 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,894,248 - 14,011,305 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,630,097 - 12,753,720 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,450,899 - 12,600,321 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,080,812 - 13,202,287 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cep120
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213135,614,220 - 135,689,343 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365753,695,377 - 3,770,687 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365753,695,473 - 3,770,522 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP120
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2126,840,266 - 126,930,483 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12126,840,262 - 126,930,117 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22132,182,338 - 132,269,849 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CEP120
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12326,392,940 - 26,469,818 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2326,392,941 - 26,469,717 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603451,653,525 - 51,730,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep120
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477418,587,485 - 18,654,897 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477418,587,363 - 18,654,726 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cep120
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11578,014,759 - 78,078,154 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cep120
344 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:209
Count of miRNA genes:143
Interacting mature miRNAs:177
Transcripts:ENSRNOT00000023236
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184891705460064728Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)183857591983575919Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184562030686134022Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050563968306Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184891573786134022Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184891573786134022Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183199089176990891Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184562030686134022Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184918722662647720Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183161050585493247Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)183337915878379158Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)184046238385462383Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)183199089176990891Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)183337915878379158Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)183337915878379158Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)183337915878379158Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183152278376522783Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)183337915878379158Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184891705460064728Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183337915878379158Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)183337915878379158Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184891705460064728Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183161050577371277Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183612162681121626Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)183199089176990891Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184891573786134022Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183164450879484311Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)183199089176990891Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183161050572538878Rat

Markers in Region
RH137085  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21847,128,042 - 47,128,261 (+)MAPPERmRatBN7.2
Rnor_6.01848,658,557 - 48,658,775NCBIRnor6.0
Rnor_5.01847,868,834 - 47,869,052UniSTSRnor5.0
RGSC_v3.41849,192,494 - 49,192,712UniSTSRGSC3.4
Celera1845,306,723 - 45,306,941UniSTS
Cytogenetic Map18q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000023236   ⟹   ENSRNOP00000023236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1849,326,266 - 49,388,243 (-)Ensembl
mRatBN7.2 Ensembl1847,127,981 - 47,189,964 (-)Ensembl
Rnor_6.0 Ensembl1848,658,495 - 48,720,472 (-)Ensembl
RefSeq Acc Id: NM_001191697   ⟹   NP_001178626
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81849,326,266 - 49,388,243 (-)NCBI
mRatBN7.21847,127,981 - 47,189,964 (-)NCBI
Rnor_6.01848,658,495 - 48,720,472 (-)NCBI
Rnor_5.01847,868,772 - 47,930,749 (-)NCBI
Celera1845,306,661 - 45,368,619 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063277302   ⟹   XP_063133372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81849,326,271 - 49,388,380 (-)NCBI
RefSeq Acc Id: XM_063277303   ⟹   XP_063133373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81849,358,919 - 49,388,335 (-)NCBI
RefSeq Acc Id: XM_063277304   ⟹   XP_063133374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81849,360,408 - 49,388,334 (-)NCBI
RefSeq Acc Id: XM_063277305   ⟹   XP_063133375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81849,326,271 - 49,367,272 (-)NCBI
RefSeq Acc Id: XR_010059566
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81849,365,327 - 49,388,335 (-)NCBI
RefSeq Acc Id: NP_001178626   ⟸   NM_001191697
- UniProtKB: D4A3J3 (UniProtKB/TrEMBL),   A6IX35 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023236   ⟸   ENSRNOT00000023236
RefSeq Acc Id: XP_063133372   ⟸   XM_063277302
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063133375   ⟸   XM_063277305
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133373   ⟸   XM_063277303
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133374   ⟸   XM_063277304
- Peptide Label: isoform X3
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3J3-F1-model_v2 AlphaFold D4A3J3 1-989 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700786
Promoter ID:EPDNEW_R11310
Type:initiation region
Name:Cep120_1
Description:centrosomal protein 120
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01848,720,494 - 48,720,554EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565619 AgrOrtholog
BioCyc Gene G2FUF-7503 BioCyc
Ensembl Genes ENSRNOG00000017035 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023236 ENTREZGENE
  ENSRNOT00000023236.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  CEP120-like UniProtKB/TrEMBL
  DUF3668 UniProtKB/TrEMBL
KEGG Report rno:307302 UniProtKB/TrEMBL
NCBI Gene 307302 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 120 KDA UniProtKB/TrEMBL
  PTHR21574 UniProtKB/TrEMBL
Pfam DUF3668 UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PhenoGen Cep120 PhenoGen
PROSITE PS50004 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017035 RatGTEx
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A6IX35 ENTREZGENE, UniProtKB/TrEMBL
  D4A3J3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-04-27 Cep120  centrosomal protein 120  Cep120  centrosomal protein 120kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-29 Cep120  centrosomal protein 120kDa  Ccdc100  coiled-coil domain containing 100  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Ccdc100  coiled-coil domain containing 100  RGD1565619_predicted  similar to hypothetical protein FLJ36090 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565619_predicted  similar to hypothetical protein FLJ36090 (predicted)  LOC307302  similar to hypothetical protein FLJ36090  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307302  similar to hypothetical protein FLJ36090      Symbol and Name status set to provisional 70820 PROVISIONAL