Advanced Search (OLGA)

Gene: Aff2 (ALF transcription elongation factor 2) Rattus norvegicus

Analyze

Symbol:

Aff2

Name:

ALF transcription elongation factor 2

RGD ID:

1565592

Description:

Predicted to enable G-quadruplex RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within learning or memory; negative regulation of gene expression; and nuclear speck organization. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Human ortholog(s) of this gene implicated in X-linked intellectual developmental disorder 109. Orthologous to human AFF2 (ALF transcription elongation factor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AF4/FMR2 family member 2; AF4/FMR2 family, member 2; LOC293922; RGD1565592; similar to FMR2 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AFF2 (ALF transcription elongation factor 2)	HGNC	Ensembl, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Aff2 (AF4/FMR2 family, member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Aff2 (ALF transcription elongation factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AFF2 (ALF transcription elongation factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AFF2 (ALF transcription elongation factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Aff2 (ALF transcription elongation factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AFF2 (ALF transcription elongation factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AFF2 (ALF transcription elongation factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Aff2 (ALF transcription elongation factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Aff2 (ALF transcription elongation factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SCUBE3 (signal peptide, CUB domain and EGF like domain containing 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	AFF2 (ALF transcription elongation factor 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	AFF2 (ALF transcription elongation factor 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Aff2 (AF4/FMR2 family, member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Aff2 (AF4/FMR2 family, member 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	aff2 (AF4/FMR2 family, member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	lilli	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	lilli	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	aff2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	152,972,579 - 153,477,080 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	152,972,581 - 153,477,080 (+)	Ensembl				GRCr8
mRatBN7.2	X	147,928,130 - 148,432,484 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	147,928,407 - 148,429,995 (+)	Ensembl				mRatBN7.2
Rnor_6.0	X	153,539,951 - 154,051,022 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	153,539,668 - 154,051,181 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	149,265,910 - 149,777,658 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	155,617,378 - 155,970,597 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	132,967,188 - 133,469,753 (-)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Dwarfism (ISO)

fragile X syndrome (ISO)

genetic disease (ISO)

intellectual disability (ISO)

non-syndromic X-linked intellectual disability (ISO)

primary ovarian insufficiency (ISO)

SULEIMAN-EL-HATTAB SYNDROME (ISO)

syndromic X-linked intellectual disability Turner type (ISO)

X-linked intellectual developmental disorder 109 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

Cuprizon (EXP)

DDT (EXP)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fonofos (ISO)

fulvestrant (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

ozone (ISO)

parathion (ISO)

perfluorohexanesulfonic acid (ISO)

pirinixic acid (ISO)

propanal (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

terbufos (ISO)

thalidomide (ISO)

titanium dioxide (ISO)

torcetrapib (ISO)

triclosan (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

DNA-templated transcription elongation (IBA)

learning or memory (ISO)

negative regulation of gene expression (ISO)

nervous system process (IBA)

nuclear speck organization (ISO)

regulation of DNA-templated transcription (IBA)

regulation of gene expression (IEA,ISO)

regulation of RNA splicing (IBA,IEA,ISO)

Cellular Component

nuclear speck (IBA,IEA,ISO)

nucleus (IEA,ISO)

super elongation complex (IBA)

Molecular Function

G-quadruplex RNA binding (IEA,ISO)

transcription coregulator activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:11923441	PMID:19136466	PMID:23562910	PMID:26013685

Genomics

Comparative Map Data

Aff2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	152,972,579 - 153,477,080 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	152,972,581 - 153,477,080 (+)	Ensembl				GRCr8
mRatBN7.2	X	147,928,130 - 148,432,484 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	147,928,407 - 148,429,995 (+)	Ensembl				mRatBN7.2
Rnor_6.0	X	153,539,951 - 154,051,022 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	153,539,668 - 154,051,181 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	149,265,910 - 149,777,658 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	155,617,378 - 155,970,597 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	132,967,188 - 133,469,753 (-)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

AFF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	148,500,617 - 149,000,663 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	148,500,617 - 149,000,663 (+)	Ensembl			hg38	GRCh38
GRCh37	X	147,582,137 - 148,082,193 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	147,389,831 - 147,889,899 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	147,287,684 - 147,787,753	NCBI
Celera	X	147,930,060 - 148,430,864 (+)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	136,538,903 - 137,039,310 (+)	NCBI		HuRef
CHM1_1	X	147,493,410 - 147,993,320 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	146,765,203 - 147,266,230 (+)	NCBI		T2T-CHM13v2.0

Aff2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	68,403,796 - 68,915,660 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	68,403,900 - 68,911,643 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	69,360,190 - 69,872,054 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	69,360,294 - 69,868,037 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	66,613,506 - 67,121,212 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	65,620,996 - 66,128,702 (+)	NCBI		MGSCv36	mm8
Celera	X	60,388,756 - 60,881,813 (+)	NCBI		Celera
Cytogenetic Map	X	A7.1- A7.2	NCBI
cM Map	X	35.53	NCBI

Aff2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955498	1,012,555 - 1,492,616 (+)	Ensembl
ChiLan1.0	NW_004955498	1,012,323 - 1,497,031 (+)	NCBI	ChiLan1.0	ChiLan1.0

AFF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	147,813,480 - 148,304,494 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	147,817,088 - 148,308,102 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	137,524,106 - 138,015,114 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	147,950,886 - 148,446,235 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	147,951,022 - 148,436,935 (+)	Ensembl			panPan2	panpan1.1

AFF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	116,849,294 - 117,167,875 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	116,696,401 - 117,164,655 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	102,589,304 - 103,060,400 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	118,755,641 - 119,226,966 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	118,755,125 - 119,224,040 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	115,868,624 - 116,336,571 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	118,079,841 - 118,547,888 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	117,807,028 - 118,275,870 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Aff2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	114,720,953 - 115,196,008 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936513	414,574 - 893,676 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936513	414,839 - 893,670 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AFF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	120,777,734 - 121,263,569 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	120,777,559 - 121,263,574 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	138,260,802 - 138,747,174 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AFF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	123,192,633 - 123,708,505 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	123,338,134 - 123,704,114 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	60,855,652 - 61,357,769 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Aff2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624883	1,140,886 - 1,611,330 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624883	1,140,660 - 1,615,672 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Aff2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	127,089,841 - 127,141,325 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	31
Count of miRNA genes:	28
Interacting mature miRNAs:	31
Transcripts:	ENSRNOT00000065537
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	118973754	157758123	Rat

Markers in Region

RH131095

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	19	65,967,927 - 65,968,109	NCBI	Rnor5.0
Rnor_5.0	1	149,620,644 - 149,620,826	NCBI	Rnor5.0
RGSC_v3.4	19	52,722,313 - 52,722,494	UniSTS	RGSC3.4
RGSC_v3.4	X	155,617,504 - 155,617,685	UniSTS	RGSC3.4
Celera	19	49,735,858 - 49,736,039	UniSTS
Celera	1	133,317,703 - 133,317,884	UniSTS
Cytogenetic Map	19	q12	UniSTS
Cytogenetic Map	X	q37	UniSTS

RH137656

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	148,242,995 - 148,243,132 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	153,726,122 - 153,726,258	NCBI	Rnor6.0
Rnor_5.0	1	149,452,275 - 149,452,411	UniSTS	Rnor5.0
RGSC_v3.4	X	155,784,990 - 155,785,126	UniSTS	RGSC3.4
Celera	1	133,155,050 - 133,155,186	UniSTS
Cytogenetic Map	X	q37	UniSTS

AU049694

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	148,249,636 - 148,249,791 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	153,719,463 - 153,719,617	NCBI	Rnor6.0
Rnor_5.0	1	149,445,616 - 149,445,770	UniSTS	Rnor5.0
RGSC_v3.4	X	155,791,629 - 155,791,783	UniSTS	RGSC3.4
Celera	1	133,148,243 - 133,148,403	UniSTS
Cytogenetic Map	X	q37	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
5	11	61	124	53	56	37	23	37	212	104	11	115	58	73	19	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000087990 ⟹ ENSRNOP00000072039

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	153,025,282 - 153,477,080 (+)	Ensembl
mRatBN7.2 Ensembl	X	147,928,407 - 148,429,995 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161102 ⟹ ENSRNOP00000103733

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	152,972,581 - 153,477,080 (+)	Ensembl

RefSeq Acc Id:

NM_001427288 ⟹ NP_001414217

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	152,972,581 - 153,477,080 (+)	NCBI

RefSeq Acc Id:

XM_006229538 ⟹ XP_006229600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	152,972,748 - 153,477,080 (+)	NCBI
mRatBN7.2	X	147,928,130 - 148,432,484 (+)	NCBI
Rnor_6.0	X	153,539,951 - 154,051,022 (-)	NCBI
Rnor_5.0	1	149,265,910 - 149,777,658 (-)	NCBI

Sequence:

show sequence

CGGCCGCCACCGCAGCCCGGACGCCCTGGGCACGCGGGCAGCCGCGGAGCGAGTGGACCAGAGC
GGGCGGTCAGGCTCTTGCCTGCCCGGTGCCATCGCTTCCGCCGCCGCCGCCGCCACTGCTCCGG
AGCGCAGGACCAGGTACCCGGGGCTCCCGCCGCTGCCGCTAATGCGGCCCCAGCACTTTTAACC
GGGCAGGAGGGCCAGAGAGCCGCGCCGCCGACCGCAGCCAGAGAGCCGCGCAGCTCAGAGCCGC
GCCGACAGGCAGCGAGCAGGGACAGACGGCCGCCAGCCGCCGCCGCCCCGCCGCTATGGATCTA
TTCGACTTTTTCAGGGATTGGGACTTGGAGCAGCAGTGTCACTATGAACAAGACCGTAGTGCAC
TTAAAAAAAGGGAATGGGAACGAAGGAGTCAAGAAGTTCAACAAGAAGAAGATCTTTTTTCTTC
AGGCTTTGATCTTTTTGGGGAGCCCTACAAGACAAACAAAGGGGACGCCCTTGCCAACCGAGTC
CAGAACACTCTTGGAAGTTATGATGAAATGAAGGATCTGCTCTCTAACCATTCCAGCCAGAATC
ATCTGGTGGGCATCCCAAAGAATTCGGTGCCCCAAACTCCCATCAGCAAAAGTGAAGCAAGCTT
GTATCCAGAACAAAAGAATCGGATGATCCCATCTCACCAGGAGAATACCCACTCCTCAGTACCA
ATGCCTCCACCTTCAGTCGTGATACTCAATTCCACGCTAATAAACAGCAACAGAAAATCAAAAT
CTGAGTGGCCACGAGATAATCATAACACTAGCCCTGGACAAGCATGCCAGGCTAGCAGTCAACC
AAACAAGATACAGACATCCACACAAGACCCACCTCAAACCCGCCTGGAAGACTTCTTTGTCTAC
CCAGCTGAGCAACCTCAAATTGGTACAGCTGAAAAATCTAACCCATCTGCAAAGGAAGATAATA
ACCCTAATTCAGGTGGAGAAGATGCTTTCAAAGAAATCTTTCAGTCTAATTCACCAGAAGAATC
AGAATTTACAGTCCAAGCTCCTGGGTCTCCCCTAGTTGCCTCATCTTTATTAGCTCCCAGCAGT
GGCCTTTCAGTCCCAACCTTCCCACCAGGGCTTTACTGCAAAACAAGCATGGGACAACAAAAAC
CAACTGCATATGTAAGGCCCATGGATGGGCAGGACCAGGCAACTGACATCTCTCCGACACTGAA
GCCTTCCATTGAATTTGAGAACAGTTTTGGAAACCTCTCTTTTGGATCACTGTTGGATGGGAAA
CCCAGTGCAGCCAGTACAAAGAACAAACTGCCAAAGTTCACAATCCTGCAAACAAGTGAAGTAA
GCCTTACCAGCGAGCCAAGCTGTGTTGAGGAAATCTTGCGGGAATCTCAGCATCTGACTCCAGG
ATTCACCTTACAAAAGTGGAGTGACCCAAGCAGCAGAGCTTCAACAAAGTCAGTACCACTCAAG
TCGATGCTTGAGGACGACCTGAAGTTGAGCAGTGATGAAGATGACCTTGAACCTGTGAAGACCT
TGACCACACAGTGCACAGCCAATGAGCTCTACCAGGCTGTTGAAAAGGCAAAACCTAAGAATAA
TCCTGTGAACTCACTCTTGGCCACACCACAGCCTACATCTGCAGCTCAAGCTAGTGTGGGGTCT
GGCAGCTCCAGTGAGTCAGAGAGTAGCTCAGAATCAGACTCAGACACTGAAAGCAGCACCACCG
ACAGCGAATCCAACGAGGCTCCTAGAGTGGCTACTCCAGAGCCTGAGCCACCCTCAACCAACAA
ATGGCAGCTAGACAAATGGCTGAACAAAGTCACGTCCCAGAACAAGTCATTTATTTGTGGCCAA
AATGAGACACCCACAGAGACCATTTCTCTGCCTCCTCCAATAATACAACCAGTGGAGGTCCAGG
TCAAAGTAAAACCAAACCCTAGCCAATCTGTGGCTGTACCCAAAGAAAGGCCCCTCCTCAGTCT
TATTAGGGAGAAAGCTCGACCAAGGCCTACACAGAAAACTCCAGAAACAAAGGCCTTGAAGCAT
AAGTTGTCAACATCAGTTGACTCAGTTTCTCAAAGGACAATTGGAAAGAAACAACCCAAAAAAG
TTGAGAAAAACACCAGCTTTGAGGAGTTTATCTGGCCCAAACCAAATACTACCAGCAGTACTCC
CAAAGAAAAAGAAAGTGTGGAGCTTCCTGACCCACCACGAAGCCGCAACAAAGCTACTGCCCAC
AAACCAGTGCCTAGGAAAGAGCCAAGGCCACATGTCCCCCTGGCCACTGAGAAGAAGAAGTATA
GAGGGCCTGGGAAGATTGTTCCCAAGTCCCGGGAATTTATTGAAACAGATTCATCTACATCTGA
CTCAAGCACAGATCAGGAAGAGACCCTGCAGATCAAAGTACTGCCACCTTGCATTGCACCTGGA
GGTAATACTTCTAAATCCAAGGAGACTTCTAATGCCAGCCTAACATTAAGCACCTTGACCAGCA
GCAACAGCAACAACAACAGCAACAACTTGTCCACCAGCAATGAGGAGACAGCTTTTTCACCACC
TCCTGCCATGCAAACTGAGCTTTTGACCCCTGTACACGATCATGAGATTCCAAAAAACCTCTGG
GTGAAGATTGACCTTGACTTACTTTCTAGAGTACCTGGCCAAAATTCAGTCCCAGCAGCACCTG
CAAAGACAGACCACCACAAGGAGACTGCCTCTAAACCCAAGCGACAAACTGCTGCCATAACTGT
GGAAAAACCAGCCCCTAAGGGCAAACGTAAGCACAAGCCAGCAGAAGCTGCAGAGAAAATCCCT
GAGAAGAAGCAACGCCTGGAGGACACTACTATCTGCCTGCTTCCCCCTTGCATCTCACCAGCCC
CACCCCACAAGCCTCCCAACACTAGAGAAAATTCATCCAGGAGAGCAAACAGGAAAAGAGAAGA
AAAGCTGTTCCCTCCCGCACTTTCCCCACTGGCAGAGGACCCTCCACGTCGCAGAAATGTCAGT
GGCAACAATGGGTTCTTCAGTCAAGACAAAAATATCTCCATGGCTGGACAAATCACCTCTACCA
AACCTAAAAGAAGTGAAGGCAAATTCTGTGCTACTTTCAAAGGGATATCCATAAGTGAGGGAGA
TGCTCCAAAAAAGCCTGCCTCTGCCACCGTTACTGTCGCCAATACAGCTATTGCCACTGCTACT
GCCACTGCCACTGCTCCTGCCATTGTCACTGCCACTGTCACAGCTACTGCCACCACCACTGCCA
CAGCCACCACCACAACAACCACCACTACTATTTCTAGCATCACCCCTACAATCACTTCTGGCCT
TATGGATAGCAGTCACCTGGAGATGACATCCTGGGCAGCCCTGCCCCTCCTGGCCAGCAGTAGC
ACCAATGTCCGGAGACCCAAGCTCACTTTTGATGACTCTGTTCACAATGCTGATTTTTACATGC
AAGAGGCTAAGAAGCTGAAACACAAAGCTGATGCACTGTTTGAGAAATTTGGCAAAGCTGTGAA
CTATGCAGACGCAGCCTTGTCCTTCACTGAGTGTGGCAATGCCATGGAACGTGATCCTCTGGAA
GCGAAGTCCCCATATACCATGTATTCTGAGACTGTGGAGCTCCTCAGGTACGCAATGAGACTGA
AGAACTTTGCAAGCCCCTTAGCTTCTGATGGGGACAAAAAGCTAGCAGTATTATGCTACCGATG
CTTGTCACTTCTCTACTTGAGGATGTTTAAGCTGAAGAAGGACCATGCTATGAAGTATTCCAGA
TCACTGATGGAATATTTTAAGCAAAATGCTTCAAAAGTTCCTCAGATCCCGTCTCCTTGGGTAG
GCAACGGAAAGAATACCCCATCCCCAGTGTCTCTCAACAATGTCTCTCCCATCAACTCAATGGG
GAATTGTAACAATGGCCCAGTCACCATTCCCCAGCGCATCCACCACATGGCTGCTAGCCATGTG
AATATTACCAGTAATGTGCTTCGGGGCTATGAACACTGGGATATGGCTGATAAGCTGACAAGAG
ACAATAAAGAGTTCTTTGGTGATCTGGATACACTGATGGGGCCTCTGACCCAGCACAGCAGCAT
GACCAATCTTGTCCGCTATGTTCGCCAGGGACTGTGTTGGCTGCGCATTGATGCTCATTTGTTA
TAGTGGGCACTCTCCCATCTCACGGATCAGCACTCATCCCTCTACCTTTACCAGTGCCTTGATG
GTCACTGGTGGAACTCCACTCATTTGGAAAAGTTCTCTTTCATTATGTTTGTTTTTATGCATTT
TTGATATCTGTGAAAAACTGAAGTCATTGTAAGTGAACACTACAATGTGAGAGAAGTGTATGTT
TTATTTTTTAATATTTGATATGCATTTCTCATATCTCCTTATTTTTGTGCTTTATGGAATGAAA
ATCCCTACAATATTGAGTTAAGTCCACACGATTCAAAACAAAGAATGAGAAGCACATGTGATGA
TGACAGGCCCCTGAGAACTCAAAGAAGCATCTAACATGCATCTGGAAAAGGGACCTGCAGAGAT
CTCCGCAGTAGCCATTCCCCAAACTAGACTCTTGGGTCCAGAAAAGAATGTATCTCAGAATTCA
TTGTTAAACAATTTCTGTGGTTCCCATAGACTAAATCTTCAGGTGAGAATCTCCATTGTCAAAC
CCACAGATTTGATATTCTAACCACGTGATAAAATCAAGGGTAGCAAGCAAAACACAAGCCTAAG
AATTCTACTCTTGAAATGACACACAAGACTCTTTTGTTAACATCCTATTCCTGGTTACCTATGC
TTTTCTACTATTTTAATGGTGAGGAAGAGGAGAAAAACTTAATTCCATAACTTTGCCATCAGCT
GTTATAAACAATGTAAAACTTAACTCCTCACCTGAGATTGTCTTTGCACAAAACTCTCCTTTAC
AAGATGCACATCTTCATCATCAAAATTTCACACTTAGCTAGACTTAAGAAATCAGACTGGACTG
ACAGCTGTCCTCCCAGAAATCCATGCCTTGGCCTCATTTTCAGCCAGTAGGCAAATCCATAACT
TCATATATTTTGATAGATGTGCATATAAAATCTGTGGAATCAAAAGTCAAGTTATGACTTTTTT
AAATTGATAATGCACAATTTATTTCCCAGTGTCCTTGCTATCTGGACTTTCTAACTATTATCCA
CATTTTTTATTTTTTAGATATTTTTCTTTCAGCTTTGCTTGATGATTTCTTTCCAAAGATCTTG
GCTAAAATACAGTCATGGTTTTTTGTTAAAGTTTACATTAGTATAAGTCATTTACACGAAAATT
CCAAAGAAAATACTAAATTCTGTAAGTAATACCTAATTTTCTTTTTATAAAATGAAAATCTTAG
GTAGTGCTTCACCCTAGGATCCTTGGAATGAATCTTGAAGTTTGGGAACAGTTCACCTAATTTG
GAGCATTTCCTTATGAATTATGACTATCTCTCTTTATGATTCTCTACATTCATCTTATGGCCCT
AAAATCACCCTGTAAATACCATCTTCAGTGTTCCACCTCACCAGAAAATTTCTCCAGCTATAGT
AAACACTATGCATTCATTAGTTACTTGTAATTGCCTGCTGGCATATAATTCTGTATAACCTTTA
ATCTGCTGAGTTATTGAATTCTATTCACTGAGTTATGACCAGATAAATAATAGATATGTACATG
AAAATTGCAAACTTGTATGATTTCTAAAGCAAGTCATGCAGGTCTGTGATAAGAACTTCAGGCA
ATCACTCTGTATTCTCACTGTAAAAGTTAGGTACTTCCCTAGTTGCAAAAGAGCCAGATTTGAG
TTCTGCTCTGATCATATTTGAGTTTAAGGCTCTTTGTGGTATAATAAAGTTAAGGAAGTTGCAT
TCCAATGGCTAAAGCCATGCTGTTTCTATGGCTGATGGGTGTACCCCAGCAGCTGAAGCCTGCA
CTTTTTATGCTCCCAATGTGGTTGAGCTTTAAACCTACAGTTTCAGCAACAACACTTACTTATG
CACACACACACACACACACACACACACACACACAAATGAAATCTAAATCTTCTCTGTGCCTCTT
AAATGAGGAAAATAAAAATATGAAAGACAGAACACCCCAAATGGGTGTCACATGAAAATAAAAT
GAGCTGATGACTTTGCAGTAACTCAAGTTCTCTGTTTTCCATGGCAAACCAGGAAGCTCTCCTG
GCTTGACTTGTAAATTAAGCCTACTCCACATCCTAGGCCTTCATAGATTTACACACAGATTATT
TTTGAAATTAAGTCTCCAAGAACTAGAAATTAGAGTGGTAGGAGCAGTTTTCCATAGAAACAAG
CATATTTCACATAGATGAAAGACTTGTTACTCTAGTTTCAGTAACTCATCTTTTCTTCTAATAT
AGAACAAGGAGGCAAGAGAATACTCCATCATCTCTGGTAACTGATTGTAAAGTGCCATGTCAGC
AGTATGATTATCAAATGTGACAGGAGAGTTCTAGTTCATCACCTGATTATTTAGTAGACCTGCC
TGTAACATAGCTTAAAAACAAGTTAAACATGGAGGATGAATTGATTACCTTCACATCCCTGGAG
ATGAGGAGTCTTTGGTCTCCTGGTTAAATTTGTTTCTGTTTTCTAGGCACTCTAGTCATCATGC
TAAAGATGGTGATGTGCATTATGGGTGTTCAGCTATCTGCAGGATTGAAAGATTTAAGATGTTG
TCAAGGGAATCTCTTCAGAGTACCAGTTAAGTGGGAGGGATATGAGACCTAAGGATGGCAGTGA
AAGATTGTGCCTCTGGATGTTGGTGGAGGCTTGGTGAGTCACATCTGAACAAGTTTATGAAGGT
GTGGTGATGGGCAGAGTAATAGGCAGCCTACCCCCAACCCCCAAACAAATACAAGAAACAACCA
CAGCCCTACAACATGACCCAGGTAGGGCCAGCATTATGCCTTCATTTATCACACAAGCTCCAAC
CACAGAGAGTCTGACAAGTTTGTGTTATGATGTTGGCTTGGCTTAGTATCTTTAATTAGCTTTG
GATTTTTTAGTGGTTTTGTCATATTACTGTCTGAGTTTTGTAGGTAGGATTAATTTGAAAAGAA
TTTGATAGTGTGGTCCTTGGGGTAGAATTTACCTGTACGCATGTTGTTAGCCAGCCTATAGACT
GTTAATTACTTAATAATCTCATTGGGAAAAACTAGTAGTTTTATATTCAGGTAACATAATTGGA
GAAAGCAGACTAGCTTCTGTGGCTTTTTGAAATGTCTTTTTTTTCTTTCATGTAGTGAAATGAA
AAGATCCAAATCTTCAGTCAAAGGTAGCAAAATTAGATGCCATTGCCTAAAATGTGTTTTGCTG
AGTTTCCAAATGGATGGATGGTTAAAGGCATTGGAATTGGTCTGCATTGGAAAGATGCTAGTTT
AGTTCTACTGTACCTGAAGCTATGGAAATTTAGATTTTGTTTTCTCAAAGTTGGATCCCGGAGG
TTGAAGTTAGAGTTTGAAGTTGAAAATCATTTTGAAGGCAGACTCGATAAAGTAGTGAGGGTGA
AGCCCTTACTTTCTTCTCAACAGACATAATAAACATCACCTGCATGAGTTAGCAGGTGGGAGAA
CCAAACTGGATCCCTGGGTAGGAGTACTCAGTAAAGCAACACACTGTTTGCTTAGAGAAGCATC
ACTATCCCCATTGAGAAAAAATGGGTGATTCAGTGCCCCCAAATTCAACTCTGTGGGGAAAACT
ATTGAGCCAGTTGTGAGTGTTGTGTTCCAACTGGCAGACTCGATTCTTTGTCATCGTTGTTCTT
GTTGTTGCTGTTGTTGTTTCGCATTTCCACTTGCACAGCCTTATTGTCATAATTAAACTCTGAT
TCATTTTCTCTTTGGTGTTAGCAAACTCCAATGACAGAAGTGGCATCTGTGTATTGATAATCAG
CATTTACCCTGGCAGGGGACTAATCAGATAGGCTGGTCTCAGACATTAATCCTACCATCTGATA
TTTCCAGCAAAAGAGAAAGTGTTAGTTCCCTTTCCATTCCCCTCCTCATGAATCTAGAAGCCCT
CTGTACCAAGAGCATCACATTTTTCTCTGTAATC

hide sequence

RefSeq Acc Id:

XM_006229539 ⟹ XP_006229601

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	152,972,579 - 153,477,080 (+)	NCBI
mRatBN7.2	X	147,928,130 - 148,432,484 (+)	NCBI
Rnor_6.0	X	153,539,951 - 154,051,022 (-)	NCBI
Rnor_5.0	1	149,265,910 - 149,777,658 (-)	NCBI

Sequence:

show sequence

CGGCCGCCACCGCAGCCCGGACGCCCTGGGCACGCGGGCAGCCGCGGAGCGAGTGGACCAGAGC
GGGCGGTCAGGCTCTTGCCTGCCCGGTGCCATCGCTTCCGCCGCCGCCGCCGCCACTGCTCCGG
AGCGCAGGACCAGGTACCCGGGGCTCCCGCCGCTGCCGCTAATGCGGCCCCAGCACTTTTAACC
GGGCAGGAGGGCCAGAGAGCCGCGCCGCCGACCGCAGCCAGAGAGCCGCGCAGCTCAGAGCCGC
GCCGACAGGCAGCGAGCAGGGACAGACGGCCGCCAGCCGCCGCCGCCCCGCCGCTATGGATCTA
TTCGACTTTTTCAGGGATTGGGACTTGGAGCAGCAGTGTCACTATGAACAAGACCGTAGTGCAC
TTAAAAAAAGGGAATGGGAACGAAGGAGTCAAGAAGTTCAACAAGAAGAAGATCTTTTTTCTTC
AGGCTTTGATCTTTTTGGGGAGCCCTACAAGACAAACAAAGGGGACGCCCTTGCCAACCGAGTC
CAGAACACTCTTGGAAGTTATGATGAAATGAAGGATCTGCTCTCTAACCATTCCAGCCAGAATC
ATCTGGTGGGCATCCCAAAGAATTCGGTGCCCCAAACTCCCATCAGCAAAAGTGAAGCAAGCTT
GTATCCAGAACAAAAGAATCGGATGATCCCATCTCACCAGGAGAATACCCACTCCTCAGTACCA
ATGCCTCCACCTTCAGTCGTGATACTCAATTCCACGCTAATAAACAGCAACAGAAAATCAAAAT
CTGAGTGGCCACGAGATAATCATAACACTAGCCCTGGACAAGCATGCCAGGCTAGCAGTCAACC
AAACAAGATACAGACATCCACACAAGACCCACCTCAAACCCGCCTGGAAGACTTCTTTGTCTAC
CCAGCTGAGCAACCTCAAATTGGTACAGCTGAAAAATCTAACCCATCTGCAAAGGAAGATAATA
ACCCTAATTCAGGTGGAGAAGATGCTTTCAAAGAAATCTTTCAGTCTAATTCACCAGAAGAATC
AGAATTTACAGTCCAAGCTCCTGGGTCTCCCCTAGTTGCCTCATCTTTATTAGCTCCCAGCAGT
GGCCTTTCAGTCCCAACCTTCCCACCAGGGCTTTACTGCAAAACAAGCATGGGACAACAAAAAC
CAACTGCATATGTAAGGCCCATGGATGGGCAGGACCAGGCAACTGACATCTCTCCGACACTGAA
GCCTTCCATTGAATTTGAGAACAGTTTTGGAAACCTCTCTTTTGGATCACTGTTGGATGGGAAA
CCCAGTGCAGCCAGTACAAAGAACAAACTGCCAAAGTTCACAATCCTGCAAACAAGTGAAGTAA
GCCTTACCAGCGAGCCAAGCTGTGTTGAGGAAATCTTGCGGGAATCTCAGCATCTGACTCCAGG
ATTCACCTTACAAAAGTGGAGTGACCCAAGCAGCAGAGCTTCAACAAAGATGCTTGAGGACGAC
CTGAAGTTGAGCAGTGATGAAGATGACCTTGAACCTGTGAAGACCTTGACCACACAGTGCACAG
CCAATGAGCTCTACCAGGCTGTTGAAAAGGCAAAACCTAAGAATAATCCTGTGAACTCACTCTT
GGCCACACCACAGCCTACATCTGCAGCTCAAGCTAGTGTGGGGTCTGGCAGCTCCAGTGAGTCA
GAGAGTAGCTCAGAATCAGACTCAGACACTGAAAGCAGCACCACCGACAGCGAATCCAACGAGG
CTCCTAGAGTGGCTACTCCAGAGCCTGAGCCACCCTCAACCAACAAATGGCAGCTAGACAAATG
GCTGAACAAAGTCACGTCCCAGAACAAGTCATTTATTTGTGGCCAAAATGAGACACCCACAGAG
ACCATTTCTCTGCCTCCTCCAATAATACAACCAGTGGAGGTCCAGGTCAAAGTAAAACCAAACC
CTAGCCAATCTGTGGCTGTACCCAAAGAAAGGCCCCTCCTCAGTCTTATTAGGGAGAAAGCTCG
ACCAAGGCCTACACAGAAAACTCCAGAAACAAAGGCCTTGAAGCATAAGTTGTCAACATCAGTT
GACTCAGTTTCTCAAAGGACAATTGGAAAGAAACAACCCAAAAAAGTTGAGAAAAACACCAGCT
TTGAGGAGTTTATCTGGCCCAAACCAAATACTACCAGCAGTACTCCCAAAGAAAAAGAAAGTGT
GGAGCTTCCTGACCCACCACGAAGCCGCAACAAAGCTACTGCCCACAAACCAGTGCCTAGGAAA
GAGCCAAGGCCACATGTCCCCCTGGCCACTGAGAAGAAGAAGTATAGAGGGCCTGGGAAGATTG
TTCCCAAGTCCCGGGAATTTATTGAAACAGATTCATCTACATCTGACTCAAGCACAGATCAGGA
AGAGACCCTGCAGATCAAAGTACTGCCACCTTGCATTGCACCTGGAGGTAATACTTCTAAATCC
AAGGAGACTTCTAATGCCAGCCTAACATTAAGCACCTTGACCAGCAGCAACAGCAACAACAACA
GCAACAACTTGTCCACCAGCAATGAGGAGACAGCTTTTTCACCACCTCCTGCCATGCAAACTGA
GCTTTTGACCCCTGTACACGATCATGAGATTCCAAAAAACCTCTGGGTGAAGATTGACCTTGAC
TTACTTTCTAGAGTACCTGGCCAAAATTCAGTCCCAGCAGCACCTGCAAAGACAGACCACCACA
AGGAGACTGCCTCTAAACCCAAGCGACAAACTGCTGCCATAACTGTGGAAAAACCAGCCCCTAA
GGGCAAACGTAAGCACAAGCCAGCAGAAGCTGCAGAGAAAATCCCTGAGAAGAAGCAACGCCTG
GAGGACACTACTATCTGCCTGCTTCCCCCTTGCATCTCACCAGCCCCACCCCACAAGCCTCCCA
ACACTAGAGAAAATTCATCCAGGAGAGCAAACAGGAAAAGAGAAGAAAAGCTGTTCCCTCCCGC
ACTTTCCCCACTGGCAGAGGACCCTCCACGTCGCAGAAATGTCAGTGGCAACAATGGGTTCTTC
AGTCAAGACAAAAATATCTCCATGGCTGGACAAATCACCTCTACCAAACCTAAAAGAAGTGAAG
GCAAATTCTGTGCTACTTTCAAAGGGATATCCATAAGTGAGGGAGATGCTCCAAAAAAGCCTGC
CTCTGCCACCGTTACTGTCGCCAATACAGCTATTGCCACTGCTACTGCCACTGCCACTGCTCCT
GCCATTGTCACTGCCACTGTCACAGCTACTGCCACCACCACTGCCACAGCCACCACCACAACAA
CCACCACTACTATTTCTAGCATCACCCCTACAATCACTTCTGGCCTTATGGATAGCAGTCACCT
GGAGATGACATCCTGGGCAGCCCTGCCCCTCCTGGCCAGCAGTAGCACCAATGTCCGGAGACCC
AAGCTCACTTTTGATGACTCTGTTCACAATGCTGATTTTTACATGCAAGAGGCTAAGAAGCTGA
AACACAAAGCTGATGCACTGTTTGAGAAATTTGGCAAAGCTGTGAACTATGCAGACGCAGCCTT
GTCCTTCACTGAGTGTGGCAATGCCATGGAACGTGATCCTCTGGAAGCGAAGTCCCCATATACC
ATGTATTCTGAGACTGTGGAGCTCCTCAGGTACGCAATGAGACTGAAGAACTTTGCAAGCCCCT
TAGCTTCTGATGGGGACAAAAAGCTAGCAGTATTATGCTACCGATGCTTGTCACTTCTCTACTT
GAGGATGTTTAAGCTGAAGAAGGACCATGCTATGAAGTATTCCAGATCACTGATGGAATATTTT
AAGCAAAATGCTTCAAAAGTTCCTCAGATCCCGTCTCCTTGGGTAGGCAACGGAAAGAATACCC
CATCCCCAGTGTCTCTCAACAATGTCTCTCCCATCAACTCAATGGGGAATTGTAACAATGGCCC
AGTCACCATTCCCCAGCGCATCCACCACATGGCTGCTAGCCATGTGAATATTACCAGTAATGTG
CTTCGGGGCTATGAACACTGGGATATGGCTGATAAGCTGACAAGAGACAATAAAGAGTTCTTTG
GTGATCTGGATACACTGATGGGGCCTCTGACCCAGCACAGCAGCATGACCAATCTTGTCCGCTA
TGTTCGCCAGGGACTGTGTTGGCTGCGCATTGATGCTCATTTGTTATAGTGGGCACTCTCCCAT
CTCACGGATCAGCACTCATCCCTCTACCTTTACCAGTGCCTTGATGGTCACTGGTGGAACTCCA
CTCATTTGGAAAAGTTCTCTTTCATTATGTTTGTTTTTATGCATTTTTGATATCTGTGAAAAAC
TGAAGTCATTGTAAGTGAACACTACAATGTGAGAGAAGTGTATGTTTTATTTTTTAATATTTGA
TATGCATTTCTCATATCTCCTTATTTTTGTGCTTTATGGAATGAAAATCCCTACAATATTGAGT
TAAGTCCACACGATTCAAAACAAAGAATGAGAAGCACATGTGATGATGACAGGCCCCTGAGAAC
TCAAAGAAGCATCTAACATGCATCTGGAAAAGGGACCTGCAGAGATCTCCGCAGTAGCCATTCC
CCAAACTAGACTCTTGGGTCCAGAAAAGAATGTATCTCAGAATTCATTGTTAAACAATTTCTGT
GGTTCCCATAGACTAAATCTTCAGGTGAGAATCTCCATTGTCAAACCCACAGATTTGATATTCT
AACCACGTGATAAAATCAAGGGTAGCAAGCAAAACACAAGCCTAAGAATTCTACTCTTGAAATG
ACACACAAGACTCTTTTGTTAACATCCTATTCCTGGTTACCTATGCTTTTCTACTATTTTAATG
GTGAGGAAGAGGAGAAAAACTTAATTCCATAACTTTGCCATCAGCTGTTATAAACAATGTAAAA
CTTAACTCCTCACCTGAGATTGTCTTTGCACAAAACTCTCCTTTACAAGATGCACATCTTCATC
ATCAAAATTTCACACTTAGCTAGACTTAAGAAATCAGACTGGACTGACAGCTGTCCTCCCAGAA
ATCCATGCCTTGGCCTCATTTTCAGCCAGTAGGCAAATCCATAACTTCATATATTTTGATAGAT
GTGCATATAAAATCTGTGGAATCAAAAGTCAAGTTATGACTTTTTTAAATTGATAATGCACAAT
TTATTTCCCAGTGTCCTTGCTATCTGGACTTTCTAACTATTATCCACATTTTTTATTTTTTAGA
TATTTTTCTTTCAGCTTTGCTTGATGATTTCTTTCCAAAGATCTTGGCTAAAATACAGTCATGG
TTTTTTGTTAAAGTTTACATTAGTATAAGTCATTTACACGAAAATTCCAAAGAAAATACTAAAT
TCTGTAAGTAATACCTAATTTTCTTTTTATAAAATGAAAATCTTAGGTAGTGCTTCACCCTAGG
ATCCTTGGAATGAATCTTGAAGTTTGGGAACAGTTCACCTAATTTGGAGCATTTCCTTATGAAT
TATGACTATCTCTCTTTATGATTCTCTACATTCATCTTATGGCCCTAAAATCACCCTGTAAATA
CCATCTTCAGTGTTCCACCTCACCAGAAAATTTCTCCAGCTATAGTAAACACTATGCATTCATT
AGTTACTTGTAATTGCCTGCTGGCATATAATTCTGTATAACCTTTAATCTGCTGAGTTATTGAA
TTCTATTCACTGAGTTATGACCAGATAAATAATAGATATGTACATGAAAATTGCAAACTTGTAT
GATTTCTAAAGCAAGTCATGCAGGTCTGTGATAAGAACTTCAGGCAATCACTCTGTATTCTCAC
TGTAAAAGTTAGGTACTTCCCTAGTTGCAAAAGAGCCAGATTTGAGTTCTGCTCTGATCATATT
TGAGTTTAAGGCTCTTTGTGGTATAATAAAGTTAAGGAAGTTGCATTCCAATGGCTAAAGCCAT
GCTGTTTCTATGGCTGATGGGTGTACCCCAGCAGCTGAAGCCTGCACTTTTTATGCTCCCAATG
TGGTTGAGCTTTAAACCTACAGTTTCAGCAACAACACTTACTTATGCACACACACACACACACA
CACACACACACACACAAATGAAATCTAAATCTTCTCTGTGCCTCTTAAATGAGGAAAATAAAAA
TATGAAAGACAGAACACCCCAAATGGGTGTCACATGAAAATAAAATGAGCTGATGACTTTGCAG
TAACTCAAGTTCTCTGTTTTCCATGGCAAACCAGGAAGCTCTCCTGGCTTGACTTGTAAATTAA
GCCTACTCCACATCCTAGGCCTTCATAGATTTACACACAGATTATTTTTGAAATTAAGTCTCCA
AGAACTAGAAATTAGAGTGGTAGGAGCAGTTTTCCATAGAAACAAGCATATTTCACATAGATGA
AAGACTTGTTACTCTAGTTTCAGTAACTCATCTTTTCTTCTAATATAGAACAAGGAGGCAAGAG
AATACTCCATCATCTCTGGTAACTGATTGTAAAGTGCCATGTCAGCAGTATGATTATCAAATGT
GACAGGAGAGTTCTAGTTCATCACCTGATTATTTAGTAGACCTGCCTGTAACATAGCTTAAAAA
CAAGTTAAACATGGAGGATGAATTGATTACCTTCACATCCCTGGAGATGAGGAGTCTTTGGTCT
CCTGGTTAAATTTGTTTCTGTTTTCTAGGCACTCTAGTCATCATGCTAAAGATGGTGATGTGCA
TTATGGGTGTTCAGCTATCTGCAGGATTGAAAGATTTAAGATGTTGTCAAGGGAATCTCTTCAG
AGTACCAGTTAAGTGGGAGGGATATGAGACCTAAGGATGGCAGTGAAAGATTGTGCCTCTGGAT
GTTGGTGGAGGCTTGGTGAGTCACATCTGAACAAGTTTATGAAGGTGTGGTGATGGGCAGAGTA
ATAGGCAGCCTACCCCCAACCCCCAAACAAATACAAGAAACAACCACAGCCCTACAACATGACC
CAGGTAGGGCCAGCATTATGCCTTCATTTATCACACAAGCTCCAACCACAGAGAGTCTGACAAG
TTTGTGTTATGATGTTGGCTTGGCTTAGTATCTTTAATTAGCTTTGGATTTTTTAGTGGTTTTG
TCATATTACTGTCTGAGTTTTGTAGGTAGGATTAATTTGAAAAGAATTTGATAGTGTGGTCCTT
GGGGTAGAATTTACCTGTACGCATGTTGTTAGCCAGCCTATAGACTGTTAATTACTTAATAATC
TCATTGGGAAAAACTAGTAGTTTTATATTCAGGTAACATAATTGGAGAAAGCAGACTAGCTTCT
GTGGCTTTTTGAAATGTCTTTTTTTTCTTTCATGTAGTGAAATGAAAAGATCCAAATCTTCAGT
CAAAGGTAGCAAAATTAGATGCCATTGCCTAAAATGTGTTTTGCTGAGTTTCCAAATGGATGGA
TGGTTAAAGGCATTGGAATTGGTCTGCATTGGAAAGATGCTAGTTTAGTTCTACTGTACCTGAA
GCTATGGAAATTTAGATTTTGTTTTCTCAAAGTTGGATCCCGGAGGTTGAAGTTAGAGTTTGAA
GTTGAAAATCATTTTGAAGGCAGACTCGATAAAGTAGTGAGGGTGAAGCCCTTACTTTCTTCTC
AACAGACATAATAAACATCACCTGCATGAGTTAGCAGGTGGGAGAACCAAACTGGATCCCTGGG
TAGGAGTACTCAGTAAAGCAACACACTGTTTGCTTAGAGAAGCATCACTATCCCCATTGAGAAA
AAATGGGTGATTCAGTGCCCCCAAATTCAACTCTGTGGGGAAAACTATTGAGCCAGTTGTGAGT
GTTGTGTTCCAACTGGCAGACTCGATTCTTTGTCATCGTTGTTCTTGTTGTTGCTGTTGTTGTT
TCGCATTTCCACTTGCACAGCCTTATTGTCATAATTAAACTCTGATTCATTTTCTCTTTGGTGT
TAGCAAACTCCAATGACAGAAGTGGCATCTGTGTATTGATAATCAGCATTTACCCTGGCAGGGG
ACTAATCAGATAGGCTGGTCTCAGACATTAATCCTACCATCTGATATTTCCAGCAAAAGAGAAA
GTGTTAGTTCCCTTTCCATTCCCCTCCTCATGAATCTAGAAGCCCTCTGTACCAAGAGCATCAC
ATTTTTCTCTGTAATC

hide sequence

RefSeq Acc Id:

XM_017602424 ⟹ XP_017457913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	152,972,748 - 153,477,080 (+)	NCBI
mRatBN7.2	X	147,928,130 - 148,432,484 (+)	NCBI
Rnor_6.0	X	153,539,951 - 154,051,022 (-)	NCBI

Sequence:

show sequence

CGGCCGCCACCGCAGCCCGGACGCCCTGGGCACGCGGGCAGCCGCGGAGCGAGTGGACCAGAGC
GGGCGGTCAGGCTCTTGCCTGCCCGGTGCCATCGCTTCCGCCGCCGCCGCCGCCACTGCTCCGG
AGCGCAGGACCAGGTACCCGGGGCTCCCGCCGCTGCCGCTAATGCGGCCCCAGCACTTTTAACC
GGGCAGGAGGGCCAGAGAGCCGCGCCGCCGACCGCAGCCAGAGAGCCGCGCAGCTCAGAGCCGC
GCCGACAGGCAGCGAGCAGGGACAGACGGCCGCCAGCCGCCGCCGCCCCGCCGCTATGGATCTA
TTCGACTTTTTCAGGGATTGGGACTTGGAGCAGCAGTGTCACTATGAACAAGACCGTAGTGCAC
TTAAAAAAAGGGAATGGGAACGAAGGAGTCAAGAAGTTCAACAAGAAGAAGATCTTTTTTCTTC
AGGCTTTGATCTTTTTGGGGAGCCCTACAAGGTAGCTGAATATACAAACAAAGGGGACGCCCTT
GCCAACCGAGTCCAGAACACTCTTGGAAGTTATGATGAAATGAAGGATCTGCTCTCTAACCATT
CCAGCCAGAATCATCTGGTGGGCATCCCAAAGAATTCGGTGCCCCAAACTCCCATCAGCAAAAG
TGAAGCAAGCTTGTATCCAGAACAAAAGAATCGGATGATCCCATCTCACCAGGAGAATACCCAC
TCCTCAGTACCAATGCCTCCACCTTCAGTCGTGATACTCAATTCCACGCTAATAAACAGCAACA
GAAAATCAAAATCTGAGTGGCCACGAGATAATCATAACACTAGCCCTGGACAAGCATGCCAGGC
TAGCAGTCAACCAAACAAGATACAGACATCCACACAAGACCCACCTCAAACCCGCCTGGAAGAC
TTCTTTGTCTACCCAGCTGAGCAACCTCAAATTGGTACAGCTGAAAAATCTAACCCATCTGCAA
AGGAAGATAATAACCCTAATTCAGGTGGAGAAGATGCTTTCAAAGAAATCTTTCAGTCTAATTC
ACCAGAAGAATCAGAATTTACAGTCCAAGCTCCTGGGTCTCCCCTAGTTGCCTCATCTTTATTA
GCTCCCAGCAGTGGCCTTTCAGTCCCAACCTTCCCACCAGGGCTTTACTGCAAAACAAGCATGG
GACAACAAAAACCAACTGCATATGTAAGGCCCATGGATGGGCAGGACCAGGCAACTGACATCTC
TCCGACACTGAAGCCTTCCATTGAATTTGAGAACAGTTTTGGAAACCTCTCTTTTGGATCACTG
TTGGATGGGAAACCCAGTGCAGCCAGTACAAAGAACAAACTGCCAAAGTTCACAATCCTGCAAA
CAAGTGAAGTAAGCCTTACCAGCGAGCCAAGCTGTGTTGAGGAAATCTTGCGGGAATCTCAGCA
TCTGACTCCAGGATTCACCTTACAAAAGTGGAGTGACCCAAGCAGCAGAGCTTCAACAAAGTCA
GTACCACTCAAGTCGATGCTTGAGGACGACCTGAAGTTGAGCAGTGATGAAGATGACCTTGAAC
CTGTGAAGACCTTGACCACACAGTGCACAGCCAATGAGCTCTACCAGGCTGTTGAAAAGGCAAA
ACCTAAGAATAATCCTGTGAACTCACTCTTGGCCACACCACAGCCTACATCTGCAGCTCAAGCT
AGTGTGGGGTCTGGCAGCTCCAGTGAGTCAGAGAGTAGCTCAGAATCAGACTCAGACACTGAAA
GCAGCACCACCGACAGCGAATCCAACGAGGCTCCTAGAGTGGCTACTCCAGAGCCTGAGCCACC
CTCAACCAACAAATGGCAGCTAGACAAATGGCTGAACAAAGTCACGTCCCAGAACAAGTCATTT
ATTTGTGGCCAAAATGAGACACCCACAGAGACCATTTCTCTGCCTCCTCCAATAATACAACCAG
TGGAGGTCCAGGTCAAAGTAAAACCAAACCCTAGCCAATCTGTGGCTGTACCCAAAGAAAGGCC
CCTCCTCAGTCTTATTAGGGAGAAAGCTCGACCAAGGCCTACACAGAAAACTCCAGAAACAAAG
GCCTTGAAGCATAAGTTGTCAACATCAGTTGACTCAGTTTCTCAAAGGACAATTGGAAAGAAAC
AACCCAAAAAAGTTGAGAAAAACACCAGCTTTGAGGAGTTTATCTGGCCCAAACCAAATACTAC
CAGCAGTACTCCCAAAGAAAAAGAAAGTGTGGAGCTTCCTGACCCACCACGAAGCCGCAACAAA
GCTACTGCCCACAAACCAGTGCCTAGGAAAGAGCCAAGGCCACATGTCCCCCTGGCCACTGAGA
AGAAGAAGTATAGAGGGCCTGGGAAGATTGTTCCCAAGTCCCGGGAATTTATTGAAACAGATTC
ATCTACATCTGACTCAAGCACAGATCAGGAAGAGACCCTGCAGATCAAAGTACTGCCACCTTGC
ATTGCACCTGGAGGTAATACTTCTAAATCCAAGGAGACTTCTAATGCCAGCCTAACATTAAGCA
CCTTGACCAGCAGCAACAGCAACAACAACAGCAACAACTTGTCCACCAGCAATGAGGAGACAGC
TTTTTCACCACCTCCTGCCATGCAAACTGAGCTTTTGACCCCTGTACACGATCATGAGATTCCA
AAAAACCTCTGGGTGAAGATTGACCTTGACTTACTTTCTAGAGTACCTGGCCAAAATTCAGTCC
CAGCAGCACCTGCAAAGACAGACCACCACAAGGAGACTGCCTCTAAACCCAAGCGACAAACTGC
TGCCATAACTGTGGAAAAACCAGCCCCTAAGGGCAAACGTAAGCACAAGCCAGCAGAAGCTGCA
GAGAAAATCCCTGAGAAGAAGCAACGCCTGGAGGACACTACTATCTGCCTGCTTCCCCCTTGCA
TCTCACCAGCCCCACCCCACAAGCCTCCCAACACTAGAGAAAATTCATCCAGGAGAGCAAACAG
GAAAAGAGAAGAAAAGCTGTTCCCTCCCGCACTTTCCCCACTGGCAGAGGACCCTCCACGTCGC
AGAAATGTCAGTGGCAACAATGGGTTCTTCAGTCAAGACAAAAATATCTCCATGGCTGGACAAA
TCACCTCTACCAAACCTAAAAGAAGTGAAGGCAAATTCTGTGCTACTTTCAAAGGGATATCCAT
AAGTGAGGGAGATGCTCCAAAAAAGCCTGCCTCTGCCACCGTTACTGTCGCCAATACAGCTATT
GCCACTGCTACTGCCACTGCCACTGCTCCTGCCATTGTCACTGCCACTGTCACAGCTACTGCCA
CCACCACTGCCACAGCCACCACCACAACAACCACCACTACTATTTCTAGCATCACCCCTACAAT
CACTTCTGGCCTTATGGATAGCAGTCACCTGGAGATGACATCCTGGGCAGCCCTGCCCCTCCTG
GCCAGCAGTAGCACCAATGTCCGGAGACCCAAGCTCACTTTTGATGACTCTGTTCACAATGCTG
ATTTTTACATGCAAGAGGCTAAGAAGCTGAAACACAAAGCTGATGCACTGTTTGAGAAATTTGG
CAAAGCTGTGAACTATGCAGACGCAGCCTTGTCCTTCACTGAGTGTGGCAATGCCATGGAACGT
GATCCTCTGGAAGCGAAGTCCCCATATACCATGTATTCTGAGACTGTGGAGCTCCTCAGGTACG
CAATGAGACTGAAGAACTTTGCAAGCCCCTTAGCTTCTGATGGGGACAAAAAGCTAGCAGTATT
ATGCTACCGATGCTTGTCACTTCTCTACTTGAGGATGTTTAAGCTGAAGAAGGACCATGCTATG
AAGTATTCCAGATCACTGATGGAATATTTTAAGCAAAATGCTTCAAAAGTTCCTCAGATCCCGT
CTCCTTGGGTAGGCAACGGAAAGAATACCCCATCCCCAGTGTCTCTCAACAATGTCTCTCCCAT
CAACTCAATGGGGAATTGTAACAATGGCCCAGTCACCATTCCCCAGCGCATCCACCACATGGCT
GCTAGCCATGTGAATATTACCAGTAATGTGCTTCGGGGCTATGAACACTGGGATATGGCTGATA
AGCTGACAAGAGACAATAAAGAGTTCTTTGGTGATCTGGATACACTGATGGGGCCTCTGACCCA
GCACAGCAGCATGACCAATCTTGTCCGCTATGTTCGCCAGGGACTGTGTTGGCTGCGCATTGAT
GCTCATTTGTTATAGTGGGCACTCTCCCATCTCACGGATCAGCACTCATCCCTCTACCTTTACC
AGTGCCTTGATGGTCACTGGTGGAACTCCACTCATTTGGAAAAGTTCTCTTTCATTATGTTTGT
TTTTATGCATTTTTGATATCTGTGAAAAACTGAAGTCATTGTAAGTGAACACTACAATGTGAGA
GAAGTGTATGTTTTATTTTTTAATATTTGATATGCATTTCTCATATCTCCTTATTTTTGTGCTT
TATGGAATGAAAATCCCTACAATATTGAGTTAAGTCCACACGATTCAAAACAAAGAATGAGAAG
CACATGTGATGATGACAGGCCCCTGAGAACTCAAAGAAGCATCTAACATGCATCTGGAAAAGGG
ACCTGCAGAGATCTCCGCAGTAGCCATTCCCCAAACTAGACTCTTGGGTCCAGAAAAGAATGTA
TCTCAGAATTCATTGTTAAACAATTTCTGTGGTTCCCATAGACTAAATCTTCAGGTGAGAATCT
CCATTGTCAAACCCACAGATTTGATATTCTAACCACGTGATAAAATCAAGGGTAGCAAGCAAAA
CACAAGCCTAAGAATTCTACTCTTGAAATGACACACAAGACTCTTTTGTTAACATCCTATTCCT
GGTTACCTATGCTTTTCTACTATTTTAATGGTGAGGAAGAGGAGAAAAACTTAATTCCATAACT
TTGCCATCAGCTGTTATAAACAATGTAAAACTTAACTCCTCACCTGAGATTGTCTTTGCACAAA
ACTCTCCTTTACAAGATGCACATCTTCATCATCAAAATTTCACACTTAGCTAGACTTAAGAAAT
CAGACTGGACTGACAGCTGTCCTCCCAGAAATCCATGCCTTGGCCTCATTTTCAGCCAGTAGGC
AAATCCATAACTTCATATATTTTGATAGATGTGCATATAAAATCTGTGGAATCAAAAGTCAAGT
TATGACTTTTTTAAATTGATAATGCACAATTTATTTCCCAGTGTCCTTGCTATCTGGACTTTCT
AACTATTATCCACATTTTTTATTTTTTAGATATTTTTCTTTCAGCTTTGCTTGATGATTTCTTT
CCAAAGATCTTGGCTAAAATACAGTCATGGTTTTTTGTTAAAGTTTACATTAGTATAAGTCATT
TACACGAAAATTCCAAAGAAAATACTAAATTCTGTAAGTAATACCTAATTTTCTTTTTATAAAA
TGAAAATCTTAGGTAGTGCTTCACCCTAGGATCCTTGGAATGAATCTTGAAGTTTGGGAACAGT
TCACCTAATTTGGAGCATTTCCTTATGAATTATGACTATCTCTCTTTATGATTCTCTACATTCA
TCTTATGGCCCTAAAATCACCCTGTAAATACCATCTTCAGTGTTCCACCTCACCAGAAAATTTC
TCCAGCTATAGTAAACACTATGCATTCATTAGTTACTTGTAATTGCCTGCTGGCATATAATTCT
GTATAACCTTTAATCTGCTGAGTTATTGAATTCTATTCACTGAGTTATGACCAGATAAATAATA
GATATGTACATGAAAATTGCAAACTTGTATGATTTCTAAAGCAAGTCATGCAGGTCTGTGATAA
GAACTTCAGGCAATCACTCTGTATTCTCACTGTAAAAGTTAGGTACTTCCCTAGTTGCAAAAGA
GCCAGATTTGAGTTCTGCTCTGATCATATTTGAGTTTAAGGCTCTTTGTGGTATAATAAAGTTA
AGGAAGTTGCATTCCAATGGCTAAAGCCATGCTGTTTCTATGGCTGATGGGTGTACCCCAGCAG
CTGAAGCCTGCACTTTTTATGCTCCCAATGTGGTTGAGCTTTAAACCTACAGTTTCAGCAACAA
CACTTACTTATGCACACACACACACACACACACACACACACACACAAATGAAATCTAAATCTTC
TCTGTGCCTCTTAAATGAGGAAAATAAAAATATGAAAGACAGAACACCCCAAATGGGTGTCACA
TGAAAATAAAATGAGCTGATGACTTTGCAGTAACTCAAGTTCTCTGTTTTCCATGGCAAACCAG
GAAGCTCTCCTGGCTTGACTTGTAAATTAAGCCTACTCCACATCCTAGGCCTTCATAGATTTAC
ACACAGATTATTTTTGAAATTAAGTCTCCAAGAACTAGAAATTAGAGTGGTAGGAGCAGTTTTC
CATAGAAACAAGCATATTTCACATAGATGAAAGACTTGTTACTCTAGTTTCAGTAACTCATCTT
TTCTTCTAATATAGAACAAGGAGGCAAGAGAATACTCCATCATCTCTGGTAACTGATTGTAAAG
TGCCATGTCAGCAGTATGATTATCAAATGTGACAGGAGAGTTCTAGTTCATCACCTGATTATTT
AGTAGACCTGCCTGTAACATAGCTTAAAAACAAGTTAAACATGGAGGATGAATTGATTACCTTC
ACATCCCTGGAGATGAGGAGTCTTTGGTCTCCTGGTTAAATTTGTTTCTGTTTTCTAGGCACTC
TAGTCATCATGCTAAAGATGGTGATGTGCATTATGGGTGTTCAGCTATCTGCAGGATTGAAAGA
TTTAAGATGTTGTCAAGGGAATCTCTTCAGAGTACCAGTTAAGTGGGAGGGATATGAGACCTAA
GGATGGCAGTGAAAGATTGTGCCTCTGGATGTTGGTGGAGGCTTGGTGAGTCACATCTGAACAA
GTTTATGAAGGTGTGGTGATGGGCAGAGTAATAGGCAGCCTACCCCCAACCCCCAAACAAATAC
AAGAAACAACCACAGCCCTACAACATGACCCAGGTAGGGCCAGCATTATGCCTTCATTTATCAC
ACAAGCTCCAACCACAGAGAGTCTGACAAGTTTGTGTTATGATGTTGGCTTGGCTTAGTATCTT
TAATTAGCTTTGGATTTTTTAGTGGTTTTGTCATATTACTGTCTGAGTTTTGTAGGTAGGATTA
ATTTGAAAAGAATTTGATAGTGTGGTCCTTGGGGTAGAATTTACCTGTACGCATGTTGTTAGCC
AGCCTATAGACTGTTAATTACTTAATAATCTCATTGGGAAAAACTAGTAGTTTTATATTCAGGT
AACATAATTGGAGAAAGCAGACTAGCTTCTGTGGCTTTTTGAAATGTCTTTTTTTTCTTTCATG
TAGTGAAATGAAAAGATCCAAATCTTCAGTCAAAGGTAGCAAAATTAGATGCCATTGCCTAAAA
TGTGTTTTGCTGAGTTTCCAAATGGATGGATGGTTAAAGGCATTGGAATTGGTCTGCATTGGAA
AGATGCTAGTTTAGTTCTACTGTACCTGAAGCTATGGAAATTTAGATTTTGTTTTCTCAAAGTT
GGATCCCGGAGGTTGAAGTTAGAGTTTGAAGTTGAAAATCATTTTGAAGGCAGACTCGATAAAG
TAGTGAGGGTGAAGCCCTTACTTTCTTCTCAACAGACATAATAAACATCACCTGCATGAGTTAG
CAGGTGGGAGAACCAAACTGGATCCCTGGGTAGGAGTACTCAGTAAAGCAACACACTGTTTGCT
TAGAGAAGCATCACTATCCCCATTGAGAAAAAATGGGTGATTCAGTGCCCCCAAATTCAACTCT
GTGGGGAAAACTATTGAGCCAGTTGTGAGTGTTGTGTTCCAACTGGCAGACTCGATTCTTTGTC
ATCGTTGTTCTTGTTGTTGCTGTTGTTGTTTCGCATTTCCACTTGCACAGCCTTATTGTCATAA
TTAAACTCTGATTCATTTTCTCTTTGGTGTTAGCAAACTCCAATGACAGAAGTGGCATCTGTGT
ATTGATAATCAGCATTTACCCTGGCAGGGGACTAATCAGATAGGCTGGTCTCAGACATTAATCC
TACCATCTGATATTTCCAGCAAAAGAGAAAGTGTTAGTTCCCTTTCCATTCCCCTCCTCATGAA
TCTAGAAGCCCTCTGTACCAAGAGCATCACATTTTTCTCTGTAATC

hide sequence

RefSeq Acc Id:

XM_039100404 ⟹ XP_038956332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	153,361,344 - 153,477,080 (+)	NCBI
mRatBN7.2	X	148,316,650 - 148,432,484 (+)	NCBI

RefSeq Acc Id:

XM_039100405 ⟹ XP_038956333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	153,381,708 - 153,477,080 (+)	NCBI
mRatBN7.2	X	148,337,028 - 148,432,484 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414217	(Get FASTA)	NCBI Sequence Viewer
	XP_006229600	(Get FASTA)	NCBI Sequence Viewer
	XP_006229601	(Get FASTA)	NCBI Sequence Viewer
	XP_017457913	(Get FASTA)	NCBI Sequence Viewer
	XP_038956332	(Get FASTA)	NCBI Sequence Viewer
	XP_038956333	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL84461	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072039
	ENSRNOP00000072039.3
	ENSRNOP00000103733
	ENSRNOP00000103733.1

RefSeq Acc Id:	XP_006229601 ⟸ XM_006229539
- Peptide Label:	isoform X3
- UniProtKB:	A6KQ91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLFDFFRDWDLEQQCHYEQDRSALKKREWERRSQEVQQEEDLFSSGFDLFGEPYKTNKGDALA NRVQNTLGSYDEMKDLLSNHSSQNHLVGIPKNSVPQTPISKSEASLYPEQKNRMIPSHQENTHS SVPMPPPSVVILNSTLINSNRKSKSEWPRDNHNTSPGQACQASSQPNKIQTSTQDPPQTRLEDF FVYPAEQPQIGTAEKSNPSAKEDNNPNSGGEDAFKEIFQSNSPEESEFTVQAPGSPLVASSLLA PSSGLSVPTFPPGLYCKTSMGQQKPTAYVRPMDGQDQATDISPTLKPSIEFENSFGNLSFGSLL DGKPSAASTKNKLPKFTILQTSEVSLTSEPSCVEEILRESQHLTPGFTLQKWSDPSSRASTKML EDDLKLSSDEDDLEPVKTLTTQCTANELYQAVEKAKPKNNPVNSLLATPQPTSAAQASVGSGSS SESESSSESDSDTESSTTDSESNEAPRVATPEPEPPSTNKWQLDKWLNKVTSQNKSFICGQNET PTETISLPPPIIQPVEVQVKVKPNPSQSVAVPKERPLLSLIREKARPRPTQKTPETKALKHKLS TSVDSVSQRTIGKKQPKKVEKNTSFEEFIWPKPNTTSSTPKEKESVELPDPPRSRNKATAHKPV PRKEPRPHVPLATEKKKYRGPGKIVPKSREFIETDSSTSDSSTDQEETLQIKVLPPCIAPGGNT SKSKETSNASLTLSTLTSSNSNNNSNNLSTSNEETAFSPPPAMQTELLTPVHDHEIPKNLWVKI DLDLLSRVPGQNSVPAAPAKTDHHKETASKPKRQTAAITVEKPAPKGKRKHKPAEAAEKIPEKK QRLEDTTICLLPPCISPAPPHKPPNTRENSSRRANRKREEKLFPPALSPLAEDPPRRRNVSGNN GFFSQDKNISMAGQITSTKPKRSEGKFCATFKGISISEGDAPKKPASATVTVANTAIATATATA TAPAIVTATVTATATTTATATTTTTTTTISSITPTITSGLMDSSHLEMTSWAALPLLASSSTNV RRPKLTFDDSVHNADFYMQEAKKLKHKADALFEKFGKAVNYADAALSFTECGNAMERDPLEAKS PYTMYSETVELLRYAMRLKNFASPLASDGDKKLAVLCYRCLSLLYLRMFKLKKDHAMKYSRSLM EYFKQNASKVPQIPSPWVGNGKNTPSPVSLNNVSPINSMGNCNNGPVTIPQRIHHMAASHVNIT SNVLRGYEHWDMADKLTRDNKEFFGDLDTLMGPLTQHSSMTNLVRYVRQGLCWLRIDAHLL hide sequence

RefSeq Acc Id:	XP_006229600 ⟸ XM_006229538
- Peptide Label:	isoform X2
- UniProtKB:	A6KQ91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLFDFFRDWDLEQQCHYEQDRSALKKREWERRSQEVQQEEDLFSSGFDLFGEPYKTNKGDALA NRVQNTLGSYDEMKDLLSNHSSQNHLVGIPKNSVPQTPISKSEASLYPEQKNRMIPSHQENTHS SVPMPPPSVVILNSTLINSNRKSKSEWPRDNHNTSPGQACQASSQPNKIQTSTQDPPQTRLEDF FVYPAEQPQIGTAEKSNPSAKEDNNPNSGGEDAFKEIFQSNSPEESEFTVQAPGSPLVASSLLA PSSGLSVPTFPPGLYCKTSMGQQKPTAYVRPMDGQDQATDISPTLKPSIEFENSFGNLSFGSLL DGKPSAASTKNKLPKFTILQTSEVSLTSEPSCVEEILRESQHLTPGFTLQKWSDPSSRASTKSV PLKSMLEDDLKLSSDEDDLEPVKTLTTQCTANELYQAVEKAKPKNNPVNSLLATPQPTSAAQAS VGSGSSSESESSSESDSDTESSTTDSESNEAPRVATPEPEPPSTNKWQLDKWLNKVTSQNKSFI CGQNETPTETISLPPPIIQPVEVQVKVKPNPSQSVAVPKERPLLSLIREKARPRPTQKTPETKA LKHKLSTSVDSVSQRTIGKKQPKKVEKNTSFEEFIWPKPNTTSSTPKEKESVELPDPPRSRNKA TAHKPVPRKEPRPHVPLATEKKKYRGPGKIVPKSREFIETDSSTSDSSTDQEETLQIKVLPPCI APGGNTSKSKETSNASLTLSTLTSSNSNNNSNNLSTSNEETAFSPPPAMQTELLTPVHDHEIPK NLWVKIDLDLLSRVPGQNSVPAAPAKTDHHKETASKPKRQTAAITVEKPAPKGKRKHKPAEAAE KIPEKKQRLEDTTICLLPPCISPAPPHKPPNTRENSSRRANRKREEKLFPPALSPLAEDPPRRR NVSGNNGFFSQDKNISMAGQITSTKPKRSEGKFCATFKGISISEGDAPKKPASATVTVANTAIA TATATATAPAIVTATVTATATTTATATTTTTTTTISSITPTITSGLMDSSHLEMTSWAALPLLA SSSTNVRRPKLTFDDSVHNADFYMQEAKKLKHKADALFEKFGKAVNYADAALSFTECGNAMERD PLEAKSPYTMYSETVELLRYAMRLKNFASPLASDGDKKLAVLCYRCLSLLYLRMFKLKKDHAMK YSRSLMEYFKQNASKVPQIPSPWVGNGKNTPSPVSLNNVSPINSMGNCNNGPVTIPQRIHHMAA SHVNITSNVLRGYEHWDMADKLTRDNKEFFGDLDTLMGPLTQHSSMTNLVRYVRQGLCWLRIDA HLL hide sequence

RefSeq Acc Id:	XP_017457913 ⟸ XM_017602424
- Peptide Label:	isoform X1
- UniProtKB:	A6KQ91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLFDFFRDWDLEQQCHYEQDRSALKKREWERRSQEVQQEEDLFSSGFDLFGEPYKVAEYTNKG DALANRVQNTLGSYDEMKDLLSNHSSQNHLVGIPKNSVPQTPISKSEASLYPEQKNRMIPSHQE NTHSSVPMPPPSVVILNSTLINSNRKSKSEWPRDNHNTSPGQACQASSQPNKIQTSTQDPPQTR LEDFFVYPAEQPQIGTAEKSNPSAKEDNNPNSGGEDAFKEIFQSNSPEESEFTVQAPGSPLVAS SLLAPSSGLSVPTFPPGLYCKTSMGQQKPTAYVRPMDGQDQATDISPTLKPSIEFENSFGNLSF GSLLDGKPSAASTKNKLPKFTILQTSEVSLTSEPSCVEEILRESQHLTPGFTLQKWSDPSSRAS TKSVPLKSMLEDDLKLSSDEDDLEPVKTLTTQCTANELYQAVEKAKPKNNPVNSLLATPQPTSA AQASVGSGSSSESESSSESDSDTESSTTDSESNEAPRVATPEPEPPSTNKWQLDKWLNKVTSQN KSFICGQNETPTETISLPPPIIQPVEVQVKVKPNPSQSVAVPKERPLLSLIREKARPRPTQKTP ETKALKHKLSTSVDSVSQRTIGKKQPKKVEKNTSFEEFIWPKPNTTSSTPKEKESVELPDPPRS RNKATAHKPVPRKEPRPHVPLATEKKKYRGPGKIVPKSREFIETDSSTSDSSTDQEETLQIKVL PPCIAPGGNTSKSKETSNASLTLSTLTSSNSNNNSNNLSTSNEETAFSPPPAMQTELLTPVHDH EIPKNLWVKIDLDLLSRVPGQNSVPAAPAKTDHHKETASKPKRQTAAITVEKPAPKGKRKHKPA EAAEKIPEKKQRLEDTTICLLPPCISPAPPHKPPNTRENSSRRANRKREEKLFPPALSPLAEDP PRRRNVSGNNGFFSQDKNISMAGQITSTKPKRSEGKFCATFKGISISEGDAPKKPASATVTVAN TAIATATATATAPAIVTATVTATATTTATATTTTTTTTISSITPTITSGLMDSSHLEMTSWAAL PLLASSSTNVRRPKLTFDDSVHNADFYMQEAKKLKHKADALFEKFGKAVNYADAALSFTECGNA MERDPLEAKSPYTMYSETVELLRYAMRLKNFASPLASDGDKKLAVLCYRCLSLLYLRMFKLKKD HAMKYSRSLMEYFKQNASKVPQIPSPWVGNGKNTPSPVSLNNVSPINSMGNCNNGPVTIPQRIH HMAASHVNITSNVLRGYEHWDMADKLTRDNKEFFGDLDTLMGPLTQHSSMTNLVRYVRQGLCWL RIDAHLL hide sequence

RefSeq Acc Id:	XP_038956332 ⟸ XM_039100404
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038956333 ⟸ XM_039100405
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000072039 ⟸ ENSRNOT00000087990

RefSeq Acc Id:	NP_001414217 ⟸ NM_001427288
- UniProtKB:	A0A0G2K1Y9 (UniProtKB/TrEMBL), A6KQ91 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000103733 ⟸ ENSRNOT00000161102

Protein Domains

AF4/FMR2 C-terminal homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2KA99-F1-model_v2	AlphaFold	A0A0G2KA99	1-1281	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565592	AgrOrtholog
BioCyc Gene	G2FUF-736	BioCyc
Ensembl Genes	ENSRNOG00000052572	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000087990	ENTREZGENE
	ENSRNOT00000087990.3	UniProtKB/TrEMBL
	ENSRNOT00000161102	ENTREZGENE
	ENSRNOT00000161102.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.250.2670	UniProtKB/TrEMBL
InterPro	AF4/FMR2_C	UniProtKB/TrEMBL
	AF4_int	UniProtKB/TrEMBL
	TF_AF4/FMR2	UniProtKB/TrEMBL
NCBI Gene	293922	ENTREZGENE
PANTHER	AF-4	UniProtKB/TrEMBL
	AF4/FMR2 FAMILY MEMBER 2	UniProtKB/TrEMBL
Pfam	AF-4	UniProtKB/TrEMBL
	AF-4_C	UniProtKB/TrEMBL
	AF4_int	UniProtKB/TrEMBL
PhenoGen	Aff2	PhenoGen
RatGTEx	ENSRNOG00000052572	RatGTEx
UniProt	A0A0G2K1Y9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LJN0_RAT	UniProtKB/TrEMBL
	A6KQ91	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-07-05	Aff2	ALF transcription elongation factor 2	Aff2	AF4/FMR2 family, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Aff2	AF4/FMR2 family, member 2	Aff2_predicted	AF4/FMR2 family, member 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Aff2_predicted	AF4/FMR2 family, member 2 (predicted)	RGD1565592_predicted	similar to FMR2 protein (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1565592_predicted	similar to FMR2 protein (predicted)	LOC293922	similar to FMR2 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC293922	similar to FMR2 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM