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Gene: Uckl1 (uridine-cytidine kinase 1-like 1) Rattus norvegicus

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Symbol:

Uckl1

Name:

uridine-cytidine kinase 1-like 1

RGD ID:

1565465

Description:

Predicted to enable uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human UCKL1 (uridine-cytidine kinase 1 like 1); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; atrazine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC499956; RGD1565465; similar to Uridine-cytidine kinase 1-like 1; uridine-cytidine kinase-like 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UCKL1 (uridine-cytidine kinase 1 like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Uckl1 (uridine-cytidine kinase 1-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Uckl1 (uridine-cytidine kinase 1 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UCKL1 (uridine-cytidine kinase 1 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UCKL1 (uridine-cytidine kinase 1 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Uckl1 (uridine-cytidine kinase 1 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UCKL1 (uridine-cytidine kinase 1 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UCKL1 (uridine-cytidine kinase 1 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Uckl1 (uridine-cytidine kinase 1 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Uckl1 (uridine-cytidine kinase 1 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KIAA1328 (KIAA1328)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	UCKL1 (uridine-cytidine kinase 1 like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	UCKL1 (uridine-cytidine kinase 1 like 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Uckl1 (uridine-cytidine kinase 1-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Uckl1 (uridine-cytidine kinase 1-like 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	uckl1a (uridine-cytidine kinase 1-like 1a)	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	uckl1b (uridine-cytidine kinase 1-like 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	uckl1b (uridine-cytidine kinase 1-like 1b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F19B6.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F19B6.1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	URK1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	URK1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	l(2)k01209	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	l(2)k01209	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	uckl1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	189,052,365 - 189,064,939 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	189,052,365 - 189,064,967 (-)	Ensembl				GRCr8
mRatBN7.2	3	168,674,849 - 168,687,513 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,674,849 - 168,698,091 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	173,054,030 - 173,066,604 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	182,013,124 - 182,025,698 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,675,774 - 178,688,348 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	177,066,022 - 177,078,611 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	177,066,014 - 177,078,594 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	180,775,487 - 180,788,073 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	170,707,803 - 170,720,880 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	163,900,156 - 163,912,730 (+)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

azoxystrobin (EXP)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

caffeine (ISO)

chlorpyrifos (EXP,ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

formaldehyde (ISO)

FR900359 (ISO)

glyphosate (EXP)

hydrogen peroxide (ISO)

imidacloprid (EXP)

methoxychlor (EXP)

N-methyl-4-phenylpyridinium (EXP)

obeticholic acid (ISO)

paracetamol (EXP)

pentachlorophenol (ISO)

potassium dichromate (ISO)

senecionine (ISO)

sodium arsenite (ISO)

thiabendazole (EXP)

titanium dioxide (ISO)

toluene (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate derivative biosynthetic process (IEA)

CTP salvage (IEA)

nucleobase-containing compound biosynthetic process (IEA)

nucleobase-containing small molecule metabolic process (IEA)

pyrimidine-containing compound salvage (IEA)

UMP salvage (IEA)

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

Molecular Function

ATP binding (IEA)

kinase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

transferase activity (IEA)

uridine kinase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

beta-ureidopropionase deficiency pathway (ISO)

dihydropyrimidinase deficiency pathway (ISO)

mitochondrial neurogastrointestinal encephalopathy syndrome pathway (ISO)

orotic aciduria 1 pathway (ISO)

pyrimidine metabolic pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Uckl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	189,052,365 - 189,064,939 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	189,052,365 - 189,064,967 (-)	Ensembl				GRCr8
mRatBN7.2	3	168,674,849 - 168,687,513 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,674,849 - 168,698,091 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	173,054,030 - 173,066,604 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	182,013,124 - 182,025,698 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,675,774 - 178,688,348 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	177,066,022 - 177,078,611 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	177,066,014 - 177,078,594 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	180,775,487 - 180,788,073 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	170,707,803 - 170,720,880 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	163,900,156 - 163,912,730 (+)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

UCKL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	63,939,829 - 63,956,416 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	63,939,828 - 63,956,480 (-)	Ensembl			hg38	GRCh38
GRCh37	20	62,571,182 - 62,587,769 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	62,041,630 - 62,058,212 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	62,041,634 - 62,058,212	NCBI
Celera	20	59,255,043 - 59,274,434 (-)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	59,304,567 - 59,323,105 (-)	NCBI		HuRef
CHM1_1	20	62,471,794 - 62,488,226 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	65,759,678 - 65,777,377 (-)	NCBI		T2T-CHM13v2.0

Uckl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	181,210,942 - 181,223,820 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	181,210,942 - 181,226,685 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	181,569,149 - 181,582,027 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	181,569,149 - 181,584,892 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	181,303,857 - 181,316,678 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	181,498,559 - 181,511,380 (-)	NCBI		MGSCv36	mm8
Celera	2	185,650,746 - 185,663,572 (-)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	103.66	NCBI

Uckl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	297,952 - 311,306 (+)	Ensembl
ChiLan1.0	NW_004955528	297,952 - 311,306 (+)	NCBI	ChiLan1.0	ChiLan1.0

UCKL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	69,751,874 - 69,776,594 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	69,743,884 - 69,768,578 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	20	61,860,084 - 61,876,202 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	61,860,084 - 61,876,194 (-)	Ensembl			panPan2	panpan1.1

UCKL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	47,412,520 - 47,423,222 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	47,412,521 - 47,432,860 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	46,545,991 - 46,557,047 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	48,551,585 - 48,562,625 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	48,551,592 - 48,562,625 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	47,395,875 - 47,406,868 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	47,520,665 - 47,531,762 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	48,259,048 - 48,269,306 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Uckl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	195,690,998 - 195,702,853 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	11,144,026 - 11,156,455 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	11,144,641 - 11,156,470 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UCKL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,785,422 - 62,796,378 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	62,785,419 - 62,796,396 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

UCKL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	282,267 - 299,148 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	282,365 - 299,099 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	47,812,703 - 47,832,460 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Uckl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	29,566,007 - 29,581,895 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	29,568,980 - 29,581,923 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Uckl1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	158,659,394 - 158,671,952 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	97
Count of miRNA genes:	81
Interacting mature miRNAs:	86
Transcripts:	ENSRNOT00000020695
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1300161	Rf10	Renal function QTL 10	3.57		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	3	181611379	189428310	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat

Markers in Region

RH139487

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	189,052,495 - 189,052,775 (+)	Marker Load Pipeline
mRatBN7.2	3	168,674,979 - 168,675,259 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	177,066,168 - 177,066,447	NCBI	Rnor6.0
Rnor_5.0	3	180,775,618 - 180,775,897	UniSTS	Rnor5.0
RGSC_v3.4	3	170,707,934 - 170,708,213	UniSTS	RGSC3.4
Celera	3	163,912,320 - 163,912,599	UniSTS
RH 3.4 Map	3	1551.9	UniSTS
Cytogenetic Map	3	q43	UniSTS

MARC_26200-26201:1030734098:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	168,678,922 - 168,679,877 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	177,070,111 - 177,071,065	NCBI	Rnor6.0
Rnor_5.0	3	180,779,561 - 180,780,515	UniSTS	Rnor5.0
RGSC_v3.4	3	170,711,877 - 170,712,831	UniSTS	RGSC3.4
Celera	3	163,907,702 - 163,908,656	UniSTS
Cytogenetic Map	3	q43	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020695 ⟹ ENSRNOP00000020695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	189,052,365 - 189,064,939 (-)	Ensembl
mRatBN7.2 Ensembl	3	168,674,855 - 168,687,407 (-)	Ensembl
Rnor_6.0 Ensembl	3	177,066,014 - 177,078,594 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099097 ⟹ ENSRNOP00000083311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	168,674,849 - 168,684,944 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106927 ⟹ ENSRNOP00000078158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	168,674,849 - 168,698,091 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108112 ⟹ ENSRNOP00000092533

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	189,052,365 - 189,064,217 (-)	Ensembl
mRatBN7.2 Ensembl	3	168,674,855 - 168,686,613 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112230 ⟹ ENSRNOP00000084349

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	189,052,365 - 189,064,939 (-)	Ensembl
mRatBN7.2 Ensembl	3	168,674,849 - 168,687,423 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113118 ⟹ ENSRNOP00000093317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	168,674,849 - 168,698,091 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113965 ⟹ ENSRNOP00000094809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	189,052,365 - 189,064,967 (-)	Ensembl
mRatBN7.2 Ensembl	3	168,674,869 - 168,687,397 (-)	Ensembl

RefSeq Acc Id:

NM_001109212 ⟹ NP_001102682

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,052,365 - 189,064,939 (-)	NCBI
mRatBN7.2	3	168,674,849 - 168,687,423 (-)	NCBI
Rnor_6.0	3	177,066,037 - 177,078,611 (-)	NCBI
Rnor_5.0	3	180,775,487 - 180,788,073 (-)	NCBI
RGSC_v3.4	3	170,707,803 - 170,720,880 (-)	RGD
Celera	3	163,900,156 - 163,912,730 (+)	RGD

Sequence:

show sequence

CCGGGCGCGCCTCCCCGGCCTCCGCCAGGTTCGGGACGCCATGGCTGCGCCGCCCGGCTCCGCG
GGTGCTGCCCCTTCGCCCCTGCAATCCACTGTGACCCCAGACGTGCCTGGCCGCCCGGCCGAGC
AGAATGAAACATCGTGCGAGGACCGCAGCAATGCAGGGTCCTTGGACAGACTTCTCCCACCAGT
GGGTACTGGGCGCTCACCCCGGAAGCGCACCACCAGCCAGTGCAAGTCCGAGCCACCCCTGCTT
CGTACAAGCAAACGAACCATTTACACAGCTGGGCGGCCACCATGGTACAACGAACATGGTACCC
AGTCCAAGGAAGCCTTTGCCATTGGCTTAGGAGGCGGCAGTGCGTCTGGGAAGACCACTGTGGC
CAGGATGATCATTGAGGCCCTAGATGTACCCTGGGTGGTCCTGCTGTCCATGGACTCCTTCTAT
AAGGTTCTGACACAGCAGCAGCAGGAACAGGCCGCCTGCAACAATTTCAACTTTGACCACCCTG
ATGCCTTCGACTTCGATCTCATCATTTCCACCCTCAAGAAACTAAAGCAGGGCAGGAGTGTCCA
AATACCCATCTATGATTTCACCACCCATAGCCGGAAAAAGGACTGGAAAACACTGTACGGTGCA
AATGTCATCATCTTTGAGGGTATCATGGCCTTTGCTGACAAGACACTGCTAGAGCTTCTGGACA
TGAAGATCTTTGTGGACACAGACTCTGACATCCGACTGGTACGGCGGCTGCGCAGGGACATCAG
TGAGCGAGGCCGGGACATTGAGGGTGTCATCAAGCAGTACAACAAGTTTGTCAAACCTGCTTTC
GATCAGTACATCCAGCCCACCATGCGCCTGGCAGATATCGTGGTGCCCAGAGGGAGCGGGAACA
CAGTAGCCATTGACCTGATTGTGCAGCATGTTCACAGCCAGCTGGAAGAGCGTGAACTCAGCGT
CAGGGCCGCGTTGGCCTCTGCTCACCAGTGCCATCCCCTTCCCCAGACACTGAGTGTCCTCAAG
AGCACACCACAGGTACGAGGCATGCACACCATCATCAGGGACAAGGAGACTAGCCGGGACGAAT
TCATTTTCTACTCCAAAAGACTGATGCGGCTGCTTATTGAACACGCGCTGTCTTTCCTGCCCTT
TCAGGACTGCACTGTACAGACTCCACAGGGGCAGGACTACGTGGGAAAGTGCTACGCTGGAAAA
CAGATCACCGGCGTGTCCATTCTGCGTGCGGGAGAAACCATGGAGCCTGCGCTGCGTGCTGTGT
GCAAGGACGTGCGTATCGGCACCATCCTCATCCAGACCAACCAGCTCACAGGGGAGCCTGAGCT
CCATTACCTGAGACTTCCCAAGGATATTAGTGATGACCATGTGATCCTGATGGACTGCACAGTA
TCTACGGGTGCTGCAGCCATGATGGCTGTACGTGTACTCCTGGACCATGATGTGCCTGAGGACA
AGATCTTTTTGCTATCCCTGCTTATGGCAGAGATGGGCGTACATTCTGTGGCCTATGCATTCCC
ACGTGTGAGAATCATCACCACAGCCGTGGACAAGCGTGTCAATGACCTTTTCCGTATCATCCCA
GGCATTGGGAACTTTGGTGACCGGTACTTTGGGACAGATGCAGTCCCTGACGGCAGTGATGATG
ATGAGGTTACCTCTGTGGGTTAATTCCCTGTCCGAGCTACTCTTACTTCTACCCAGCCTTCTGT
CCGGAGTCACAGACACGACACATTAACTTATTTGAATTTTAAAATGTTACCAATAATATTCAGT
TTACACATTTTATAAAATAAATAAAGCTTCAGAAAATGATGG

hide sequence

RefSeq Acc Id:

XM_006235793 ⟹ XP_006235855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,052,368 - 189,064,907 (-)	NCBI
mRatBN7.2	3	168,674,852 - 168,686,481 (-)	NCBI
Rnor_6.0	3	177,066,022 - 177,077,679 (-)	NCBI
Rnor_5.0	3	180,775,487 - 180,788,073 (-)	NCBI

Sequence:

show sequence

CCCAGCTAGTTCACACACTCCAAGCATTCTGACTAGGAACCTGACTGTGATGCTTTCTAGTTCA
GAATGTCTCGATTTAACCAGAAGCAAAGAGGCCATGATGAAATACTTCCCAGGGTTCCTGAGGA
AACACCTTGAGAAGATACAAACTGCCCGGGTGCCTCAGGCGCTGGCAGCAATAGGGGAGGGAGT
CACTGGTAGACTTAATGTCCAGTGTGAGGTTTCCCCTACTGCTTTTCCCAGCACCTGTCTCCAT
ATCTGCCTGCCCTTGAGGCTTTTTCCTTGGAATCTGCTAGCCTTAGCTGGCACAGCCATTGGCT
TTCATGTCAATATGCAAAATGGAGATTGGTTTGGGATTATAGAAAGTGGAGAGAAACTAATGAT
GCTCACCGAGAGCCTTGGGGTGCAGACTGGCAAGTTAAAGCCTCTAATACCCCAGTCCTATGTC
TACCTTGTGAAAGTGGCCTTGCTGACTATCTCTGAACCACTTCCCGCCTCTTGCAGGAATTCCA
CCGAAACACCAGGATGGGTTGCTTGACTATAGATTTAACCACAGCAAGGGGACCTTGAGAACTT
TCTTAGTCCTTTGGTGGTCCAAGGGATGAGCCTTCCTTTCTTCAGTCTCTTTTGTAGACATTTG
ATTTTGGTTTCTCTGATATAGGGGGTGCAAATTTCAGGGCAGCTCTAACTTCCAAGATACTGTC
TTAGTTTCCTTACCAATAAGGCACCTGCTTAGGTCCTCAGTCACCTCTGCTTCTCTGATAAGGA
TACATACAGGTCTGCTGCAACTCCCTAATGATTGGTGTTTGAGCTGCAGATGACAGCCGCAGCT
ATTAGTCGATAGCCAGGAGGGAATGAAAACTGAGCAACACCACCTACCTCAGACGGCCCTGAGG
CTTAAAATGGAGCCCTGGAAAAAGAAAACTTCAAAGATAGAAGTTAAGGAGTGTGGCAGTCAGG
TAGTCTGGTGTATCCTAGGTAAAGATGAAATCCAGGGGTCAGGGTTATGTGGTATTTTGGGGCC
AAGATTAGTGAATCAATAGGTGGGATGGGTCTATTCTGTTAGTAACAAATCTGGAATTAAGCCT
TCCCTTTCTGAGACCAGCACAGTGTTAGCTTCCTACAGACCTGTGGCCCTTTTTGCTACCCACT
GATCCTGACCCACCGGGGTTCCCAAGGAACATGTCAGGATCTTCTGTTGTTTCAGCCAGCCAAA
CTTAGTGAACTGATTCCCTCGGATTCCTTTACTCTGCACCCCTGTCCAGAATAATATTAGCCTC
CCAGAGCAATTCTAGGCCATATCCAGCCAACCACCTAAGAGTAGAGTCAGAGGGACAGACAAAC
TCTATAAACACACGCACATGCAAACAGATAGGTTCTTCCTGCTCCTGGTGTCTGGGGATGTAGA
CATACCCACAAGTTACCTAGGTAGTGCGAAGAGCTGCCTCCAGGGCAGCTCCCAGAGTGGCTTC
TTTTCAGATGCATGAAGTCCACTTGGAAGCTTCCTTCTCTGAACCCTGCCAGACTTAGTGCTGT
AGGCCAGCCAGGTAGGATGAGGTTGCAATAAGGCCAACCCACCCCTTGAAGAGAACCCCAAAAC
CAGGAAAACCCCTCTGACTAGATCTTAAGTCAGTAAAGGGATTTCAGCTGAGGCTGGGACCAAA
TCTTCCCTTTCTATACTGTGGGCAGGGAGGTGGCTGTGTCCCCTGCTGACTGATGAGGCTTGGT
GGCCATCGGACTTGCTGGAGCCTGTGTGAGGTGGGGTGGAACAGTTATTCTTGGATGTGCTAGG
GTAGAATTTCAGATTTGTTTATCCTTGTAGGAGGCACCTTGGGGCCAGGGGAGGGGCACCCAGC
TCAGCACTAACATTCAGGTCACCTGGCCCGAAGGGGCCTCAAATTTCCTTCTCTTTGCTGTGTA
TGCATTGGGAGGCAGAACTATGTTTCTTCCAGAAAATTTGGGAAGAGGTACTAGCGGTTCCTAG
CAAGTTCAAGCCAATGTGCATAGCAGCTAACACTGAAGTATACTTCACAGCAACTGGCCTGGGG
ATTGTGCAGGCCAGAGTCAGTACTATTAATATCTGGGCATGAGCCCTAACTGGGTGATCCTCTT
ATGTGTGTGTGTGTGGCCTTAGCCTCTGGGACTAGCATTGAGTGTGTTCCCTTAGTGCAGTAGG
GCTCCTGGGGCCTCCTAGCCGCTGTGCCCCACTCCTGTATATAGCAACCTACTTCTGCAAGTAG
GGGTCCAACCCCACCTAGCTCTTCGGCTGTGCTGCCTATAGGAGTGATTCCACCCATGGAAGAC
CAGTTCAGGTGGCTAGAACTCTCAAGCTGTCCTTGGGGACAACTATAATTCTAAGAGGTAGTGA
TACTCTAACTGCTAGAACCTATACACATACCTGGGTCATCCCACTGTCCAGGGACATCCACCTC
TGAGCCCTCTGTGCTCACCTGCGTCCTTGGCTATGAGCAGCCCCCCAGCTTACCCTGGCATCAG
GATCTCAGGGTGCTGGGCTCTTGGAGCAGAAAGCAGCAGCAATGCAGGGTCCTTGGACAGACTT
CTCCCACCAGTGGGTACTGGGCGCTCACCCCGGAAGCGCACCACCAGCCAGTGCAAGTCCGAGC
CACCCCTGCTTCGTACAAGCAAACGAACCATTTACACAGCTGGGCGGCCACCATGGTACAACGA
ACATGGTACCCAGTCCAAGGAAGCCTTTGCCATTGGCTTAGGAGGCGGCAGTGCGTCTGGGAAG
ACCACTGTGGCCAGGATGATCATTGAGGCCCTAGATGTACCCTGGGTGGTCCTGCTGTCCATGG
ACTCCTTCTATAAGGTTCTGACACAGCAGCAGCAGGAACAGGCCGCCTGCAACAATTTCAACTT
TGACCACCCTGATGCCTTCGACTTCGATCTCATCATTTCCACCCTCAAGAAACTAAAGCAGGGC
AGGAGTGTCCAAATACCCATCTATGATTTCACCACCCATAGCCGGAAAAAGGACTGGAAAACAC
TGTACGGTGCAAATGTCATCATCTTTGAGGGTATCATGGCCTTTGCTGACAAGACACTGCTAGA
GCTTCTGGACATGAAGATCTTTGTGGACACAGACTCTGACATCCGACTGGTACGGCGGCTGCGC
AGGGACATCAGTGAGCGAGGCCGGGACATTGAGGGTGTCATCAAGCAGTACAACAAGTTTGTCA
AACCTGCTTTCGATCAGTACATCCAGCCCACCATGCGCCTGGCAGATATCGTGGTGCCCAGAGG
GAGCGGGAACACAGTAGCCATTGACCTGATTGTGCAGCATGTTCACAGCCAGCTGGAAGAGAGG
AAGCTGCGTTGGGATATGGCCGCGTTGGCCTCTGCTCACCAGTGCCATCCCCTTCCCCAGACAC
TGAGTGTCCTCAAGAGCACACCACAGGTACGAGGCATGCACACCATCATCAGGGACAAGGAGAC
TAGCCGGGACGAATTCATTTTCTACTCCAAAAGACTGATGCGGCTGCTTATTGAACACGCGCTG
TCTTTCCTGCCCTTTCAGGACTGCACTGTACAGACTCCACAGGGGCAGGACTACGTGGGAAAGT
GCTACGCTGGAAAACAGATCACCGGCGTGTCCATTCTGCGTGCGGGAGAAACCATGGAGCCTGC
GCTGCGTGCTGTGTGCAAGGACGTGCGTATCGGCACCATCCTCATCCAGACCAACCAGCTCACA
GGGGAGCCTGAGCTCCATTACCTGAGACTTCCCAAGGATATTAGTGATGACCATGTGATCCTGA
TGGACTGCACAGTATCTACGGGTGCTGCAGCCATGATGGCTGTACGTGTACTCCTGGACCATGA
TGTGCCTGAGGACAAGATCTTTTTGCTATCCCTGCTTATGGCAGAGATGGGCGTACATTCTGTG
GCCTATGCATTCCCACGTGTGAGAATCATCACCACAGCCGTGGACAAGCGTGTCAATGACCTTT
TCCGTATCATCCCAGGCATTGGGAACTTTGGTGACCGGTACTTTGGGACAGATGCAGTCCCTGA
CGGCAGTGATGATGATGAGGTTACCTCTGTGGGTTAATTCCCTGTCCGAGCTACTCTTACTTCT
ACCCAGCCTTCTGTCCGGAGTCACAGACACGACACATTAACTTATTTGAATTTTAAAATGTTAC
CAATAATATTCAGTTTACACATTTTATAAAATAAATAAAGCTTCAGAAAATGATGGGTGTGGCA
GAATAAA

hide sequence

RefSeq Acc Id:

XM_006235794 ⟹ XP_006235856

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,052,368 - 189,064,907 (-)	NCBI
mRatBN7.2	3	168,674,852 - 168,686,484 (-)	NCBI
Rnor_6.0	3	177,066,022 - 177,077,679 (-)	NCBI
Rnor_5.0	3	180,775,487 - 180,788,073 (-)	NCBI

Sequence:

show sequence

CCCAGCTAGTTCACACACTCCAAGCATTCTGACTAGGAACCTGACTGTGATGCTTTCTAGTTCA
GAATGTCTCGATTTAACCAGAAGCAAAGAGGCCATGATGAAATACTTCCCAGGGTTCCTGAGGA
AACACCTTGAGAAGATACAAACTGCCCGGGTGCCTCAGGCGCTGGCAGCAATAGGGGAGGGAGT
CACTGGTAGACTTAATGTCCAGTGTGAGGTTTCCCCTACTGCTTTTCCCAGCACCTGTCTCCAT
ATCTGCCTGCCCTTGAGGCTTTTTCCTTGGAATCTGCTAGCCTTAGCTGGCACAGCCATTGGCT
TTCATGTCAATATGCAAAATGGAGATTGGTTTGGGATTATAGAAAGTGGAGAGAAACTAATGAT
GCTCACCGAGAGCCTTGGGGTGCAGACTGGCAAGTTAAAGCCTCTAATACCCCAGTCCTATGTC
TACCTTGTGAAAGTGGCCTTGCTGACTATCTCTGAACCACTTCCCGCCTCTTGCAGGAATTCCA
CCGAAACACCAGGATGGGTTGCTTGACTATAGATTTAACCACAGCAAGGGGACCTTGAGAACTT
TCTTAGTCCTTTGGTGGTCCAAGGGATGAGCCTTCCTTTCTTCAGTCTCTTTTGTAGACATTTG
ATTTTGGTTTCTCTGATATAGGGGGTGCAAATTTCAGGGCAGCTCTAACTTCCAAGATACTGTC
TTAGTTTCCTTACCAATAAGGCACCTGCTTAGGTCCTCAGTCACCTCTGCTTCTCTGATAAGGA
TACATACAGGTCTGCTGCAACTCCCTAATGATTGGTGTTTGAGCTGCAGATGACAGCCGCAGCT
ATTAGTCGATAGCCAGGAGGGAATGAAAACTGAGCAACACCACCTACCTCAGACGGCCCTGAGG
CTTAAAATGGAGCCCTGGAAAAAGAAAACTTCAAAGATAGAAGTTAAGGAGTGTGGCAGTCAGG
TAGTCTGGTGTATCCTAGGTAAAGATGAAATCCAGGGGTCAGGGTTATGTGGTATTTTGGGGCC
AAGATTAGTGAATCAATAGGTGGGATGGGTCTATTCTGTTAGTAACAAATCTGGAATTAAGCCT
TCCCTTTCTGAGACCAGCACAGTGTTAGCTTCCTACAGACCTGTGGCCCTTTTTGCTACCCACT
GATCCTGACCCACCGGGGTTCCCAAGGAACATGTCAGGATCTTCTGTTGTTTCAGCCAGCCAAA
CTTAGTGAACTGATTCCCTCGGATTCCTTTACTCTGCACCCCTGTCCAGAATAATATTAGCCTC
CCAGAGCAATTCTAGGCCATATCCAGCCAACCACCTAAGAGTAGAGTCAGAGGGACAGACAAAC
TCTATAAACACACGCACATGCAAACAGATAGGTTCTTCCTGCTCCTGGTGTCTGGGGATGTAGA
CATACCCACAAGTTACCTAGGTAGTGCGAAGAGCTGCCTCCAGGGCAGCTCCCAGAGTGGCTTC
TTTTCAGATGCATGAAGTCCACTTGGAAGCTTCCTTCTCTGAACCCTGCCAGACTTAGTGCTGT
AGGCCAGCCAGGTAGGATGAGGTTGCAATAAGGCCAACCCACCCCTTGAAGAGAACCCCAAAAC
CAGGAAAACCCCTCTGACTAGATCTTAAGTCAGTAAAGGGATTTCAGCTGAGGCTGGGACCAAA
TCTTCCCTTTCTATACTGTGGGCAGGGAGGTGGCTGTGTCCCCTGCTGACTGATGAGGCTTGGT
GGCCATCGGACTTGCTGGAGCCTGTGTGAGGTGGGGTGGAACAGTTATTCTTGGATGTGCTAGG
GTAGAATTTCAGATTTGTTTATCCTTGTAGGAGGCACCTTGGGGCCAGGGGAGGGGCACCCAGC
TCAGCACTAACATTCAGGTCACCTGGCCCGAAGGGGCCTCAAATTTCCTTCTCTTTGCTGTGTA
TGCATTGGGAGGCAGAACTATGTTTCTTCCAGAAAATTTGGGAAGAGGTACTAGCGGTTCCTAG
CAAGTTCAAGCCAATGTGCATAGCAGCTAACACTGAAGTATACTTCACAGCAACTGGCCTGGGG
ATTGTGCAGGCCAGAGTCAGTACTATTAATATCTGGGCATGAGCCCTAACTGGGTGATCCTCTT
ATGTGTGTGTGTGTGGCCTTAGCCTCTGGGACTAGCATTGAGTGTGTTCCCTTAGTGCAGTAGG
GCTCCTGGGGCCTCCTAGCCGCTGTGCCCCACTCCTGTATATAGCAACCTACTTCTGCAAGTAG
GGGTCCAACCCCACCTAGCTCTTCGGCTGTGCTGCCTATAGGAGTGATTCCACCCATGGAAGAC
CAGTTCAGGTGGCTAGAACTCTCAAGCTGTCCTTGGGGACAACTATAATTCTAAGAGGTAGTGA
TACTCTAACTGCTAGAACCTATACACATACCTGGGTCATCCCACTGTCCAGGGACATCCACCTC
TGAGCCCTCTGTGCTCACCTGCGTCCTTGGCTATGAGCAGCCCCCCAGCTTACCCTGGCATCAG
GATCTCAGGGTGCTGGGCTCTTGGAGCAGAAAGCAGCAGCAATGCAGGGTCCTTGGACAGACTT
CTCCCACCAGTGGGTACTGGGCGCTCACCCCGGAAGCGCACCACCAGCCAGTGCAAGTCCGAGC
CACCCCTGCTTCGTACAAGCAAACGAACCATTTACACAGCTGGGCGGCCACCATGGTACAACGA
ACATGGTACCCAGTCCAAGGAAGCCTTTGCCATTGGCTTAGGAGGCGGCAGTGCGTCTGGGAAG
ACCACTGTGGCCAGGATGATCATTGAGGCCCTAGATGTACCCTGGGTGGTCCTGCTGTCCATGG
ACTCCTTCTATAAGGTTCTGACACAGCAGCAGCAGGAACAGGCCGCCTGCAACAATTTCAACTT
TGACCACCCTGATGCCTTCGACTTCGATCTCATCATTTCCACCCTCAAGAAACTAAAGCAGGGC
AGGAGTGTCCAAATACCCATCTATGATTTCACCACCCATAGCCGGAAAAAGGACTGGAAAACAC
TGTACGGTGCAAATGTCATCATCTTTGAGGGTATCATGGCCTTTGCTGACAAGACACTGCTAGA
GCTTCTGGACATGAAGATCTTTGTGGACACAGACTCTGACATCCGACTGGTACGGCGGCTGCGC
AGGGACATCAGTGAGCGAGGCCGGGACATTGAGGGTGTCATCAAGCAGTACAACAAGTTTGTCA
AACCTGCTTTCGATCAGTACATCCAGCCCACCATGCGCCTGGCAGATATCGTGGTGCCCAGAGG
GAGCGGGAACACAGTAGCCATTGACCTGATTGTGCAGCATGTTCACAGCCAGCTGGAAGAGCGT
GAACTCAGCGTCAGGGCCGCGTTGGCCTCTGCTCACCAGTGCCATCCCCTTCCCCAGACACTGA
GTGTCCTCAAGAGCACACCACAGGTACGAGGCATGCACACCATCATCAGGGACAAGGAGACTAG
CCGGGACGAATTCATTTTCTACTCCAAAAGACTGATGCGGCTGCTTATTGAACACGCGCTGTCT
TTCCTGCCCTTTCAGGACTGCACTGTACAGACTCCACAGGGGCAGGACTACGTGGGAAAGTGCT
ACGCTGGAAAACAGATCACCGGCGTGTCCATTCTGCGTGCGGGAGAAACCATGGAGCCTGCGCT
GCGTGCTGTGTGCAAGGACGTGCGTATCGGCACCATCCTCATCCAGACCAACCAGCTCACAGGG
GAGCCTGAGCTCCATTACCTGAGACTTCCCAAGGATATTAGTGATGACCATGTGATCCTGATGG
ACTGCACAGTATCTACGGGTGCTGCAGCCATGATGGCTGTACGTGTACTCCTGGACCATGATGT
GCCTGAGGACAAGATCTTTTTGCTATCCCTGCTTATGGCAGAGATGGGCGTACATTCTGTGGCC
TATGCATTCCCACGTGTGAGAATCATCACCACAGCCGTGGACAAGCGTGTCAATGACCTTTTCC
GTATCATCCCAGGCATTGGGAACTTTGGTGACCGGTACTTTGGGACAGATGCAGTCCCTGACGG
CAGTGATGATGATGAGGTTACCTCTGTGGGTTAATTCCCTGTCCGAGCTACTCTTACTTCTACC
CAGCCTTCTGTCCGGAGTCACAGACACGACACATTAACTTATTTGAATTTTAAAATGTTACCAA
TAATATTCAGTTTACACATTTTATAAAATAAATAAAGCTTCAGAAAATGATGGGTGTGGCAGAA
TAAA

hide sequence

RefSeq Acc Id:

XM_006235795 ⟹ XP_006235857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,052,368 - 189,064,907 (-)	NCBI
mRatBN7.2	3	168,674,852 - 168,686,485 (-)	NCBI
Rnor_6.0	3	177,066,022 - 177,077,679 (-)	NCBI
Rnor_5.0	3	180,775,487 - 180,788,073 (-)	NCBI

Sequence:

show sequence

CCCAGCTAGTTCACACACTCCAAGCATTCTGACTAGGAACCTGACTGTGATGCTTTCTAGTTCA
GAATGTCTCGATTTAACCAGAAGCAAAGAGGCCATGATGAAATACTTCCCAGGGTTCCTGAGGA
AACACCTTGAGAAGATACAAACTGCCCGGGTGCCTCAGGCGCTGGCAGCAATAGGGGAGGGAGT
CACTGGTAGACTTAATGTCCAGTGTGAGGTTTCCCCTACTGCTTTTCCCAGCACCTGTCTCCAT
ATCTGCCTGCCCTTGAGGCTTTTTCCTTGGAATCTGCTAGCCTTAGCTGGCACAGCCATTGGCT
TTCATGTCAATATGCAAAATGGAGATTGGTTTGGGATTATAGAAAGTGGAGAGAAACTAATGAT
GCTCACCGAGAGCCTTGGGGTGCAGACTGGCAAGTTAAAGCCTCTAATACCCCAGTCCTATGTC
TACCTTGTGAAAGTGGCCTTGCTGACTATCTCTGAACCACTTCCCGCCTCTTGCAGGAATTCCA
CCGAAACACCAGGATGGGTTGCTTGACTATAGATTTAACCACAGCAAGGGGACCTTGAGAACTT
TCTTAGTCCTTTGGTGGTCCAAGGGATGAGCCTTCCTTTCTTCAGTCTCTTTTGTAGACATTTG
ATTTTGGTTTCTCTGATATAGGGGGTGCAAATTTCAGGGCAGCTCTAACTTCCAAGATACTGTC
TTAGTTTCCTTACCAATAAGGCACCTGCTTAGGTCCTCAGTCACCTCTGCTTCTCTGATAAGGA
TACATACAGGTCTGCTGCAACTCCCTAATGATTGGTGTTTGAGCTGCAGATGACAGCCGCAGCT
ATTAGTCGATAGCCAGGAGGGAATGAAAACTGAGCAACACCACCTACCTCAGACGGCCCTGAGG
CTTAAAATGGAGCCCTGGAAAAAGAAAACTTCAAAGATAGAAGTTAAGGAGTGTGGCAGTCAGG
TAGTCTGGTGTATCCTAGGTAAAGATGAAATCCAGGGGTCAGGGTTATGTGGTATTTTGGGGCC
AAGATTAGTGAATCAATAGGTGGGATGGGTCTATTCTGTTAGTAACAAATCTGGAATTAAGCCT
TCCCTTTCTGAGACCAGCACAGTGTTAGCTTCCTACAGACCTGTGGCCCTTTTTGCTACCCACT
GATCCTGACCCACCGGGGTTCCCAAGGAACATGTCAGGATCTTCTGTTGTTTCAGCCAGCCAAA
CTTAGTGAACTGATTCCCTCGGATTCCTTTACTCTGCACCCCTGTCCAGAATAATATTAGCCTC
CCAGAGCAATTCTAGGCCATATCCAGCCAACCACCTAAGAGTAGAGTCAGAGGGACAGACAAAC
TCTATAAACACACGCACATGCAAACAGATAGGTTCTTCCTGCTCCTGGTGTCTGGGGATGTAGA
CATACCCACAAGTTACCTAGGTAGTGCGAAGAGCTGCCTCCAGGGCAGCTCCCAGAGTGGCTTC
TTTTCAGATGCATGAAGTCCACTTGGAAGCTTCCTTCTCTGAACCCTGCCAGACTTAGTGCTGT
AGGCCAGCCAGGTAGGATGAGGTTGCAATAAGGCCAACCCACCCCTTGAAGAGAACCCCAAAAC
CAGGAAAACCCCTCTGACTAGATCTTAAGTCAGTAAAGGGATTTCAGCTGAGGCTGGGACCAAA
TCTTCCCTTTCTATACTGTGGGCAGGGAGGTGGCTGTGTCCCCTGCTGACTGATGAGGCTTGGT
GGCCATCGGACTTGCTGGAGCCTGTGTGAGGTGGGGTGGAACAGTTATTCTTGGATGTGCTAGG
GTAGAATTTCAGATTTGTTTATCCTTGTAGGAGGCACCTTGGGGCCAGGGGAGGGGCACCCAGC
TCAGCACTAACATTCAGGTCACCTGGCCCGAAGGGGCCTCAAATTTCCTTCTCTTTGCTGTGTA
TGCATTGGGAGGCAGAACTATGTTTCTTCCAGAAAATTTGGGAAGAGGTACTAGCGGTTCCTAG
CAAGTTCAAGCCAATGTGCATAGCAGCTAACACTGAAGTATACTTCACAGCAACTGGCCTGGGG
ATTGTGCAGGCCAGAGTCAGTACTATTAATATCTGGGCATGAGCCCTAACTGGGTGATCCTCTT
ATGTGTGTGTGTGTGGCCTTAGCCTCTGGGACTAGCATTGAGTGTGTTCCCTTAGTGCAGTAGG
GCTCCTGGGGCCTCCTAGCCGCTGTGCCCCACTCCTGTATATAGCAACCTACTTCTGCAAGTAG
GGGTCCAACCCCACCTAGCTCTTCGGCTGTGCTGCCTATAGGAGTGATTCCACCCATGGAAGAC
CAGTTCAGGTGGCTAGAACTCTCAAGCTGTCCTTGGGGACAACTATAATTCTAAGAGGTAGTGA
TACTCTAACTGCTAGAACCTATACACATACCTGGGTCATCCCACTGTCCAGGGACATCCACCTC
TGAGCCCTCTGTGCTCACCTGCGTCCTTGGCTATGAGCAGCCCCCCAGCTTACCCTGGCATCAG
GATCTCAGGGTGCTGGGCTCTTGGAGCAGAAAGCAGCAATGCAGGGTCCTTGGACAGACTTCTC
CCACCAGTGGGTACTGGGCGCTCACCCCGGAAGCGCACCACCAGCCAGTGCAAGTCCGAGCCAC
CCCTGCTTCGTACAAGCAAACGAACCATTTACACAGCTGGGCGGCCACCATGGTACAACGAACA
TGGTACCCAGTCCAAGGAAGCCTTTGCCATTGGCTTAGGAGGCGGCAGTGCGTCTGGGAAGACC
ACTGTGGCCAGGATGATCATTGAGGCCCTAGATGTACCCTGGGTGGTCCTGCTGTCCATGGACT
CCTTCTATAAGGTTCTGACACAGCAGCAGCAGGAACAGGCCGCCTGCAACAATTTCAACTTTGA
CCACCCTGATGCCTTCGACTTCGATCTCATCATTTCCACCCTCAAGAAACTAAAGCAGGGCAGG
AGTGTCCAAATACCCATCTATGATTTCACCACCCATAGCCGGAAAAAGGACTGGAAAACACTGT
ACGGTGCAAATGTCATCATCTTTGAGGGTATCATGGCCTTTGCTGACAAGACACTGCTAGAGCT
TCTGGACATGAAGATCTTTGTGGACACAGACTCTGACATCCGACTGGTACGGCGGCTGCGCAGG
GACATCAGTGAGCGAGGCCGGGACATTGAGGGTGTCATCAAGCAGTACAACAAGTTTGTCAAAC
CTGCTTTCGATCAGTACATCCAGCCCACCATGCGCCTGGCAGATATCGTGGTGCCCAGAGGGAG
CGGGAACACAGTAGCCATTGACCTGATTGTGCAGCATGTTCACAGCCAGCTGGAAGAGAGGAAG
CTGCGTTGGGATATGGCCGCGTTGGCCTCTGCTCACCAGTGCCATCCCCTTCCCCAGACACTGA
GTGTCCTCAAGAGCACACCACAGGTACGAGGCATGCACACCATCATCAGGGACAAGGAGACTAG
CCGGGACGAATTCATTTTCTACTCCAAAAGACTGATGCGGCTGCTTATTGAACACGCGCTGTCT
TTCCTGCCCTTTCAGGACTGCACTGTACAGACTCCACAGGGGCAGGACTACGTGGGAAAGTGCT
ACGCTGGAAAACAGATCACCGGCGTGTCCATTCTGCGTGCGGGAGAAACCATGGAGCCTGCGCT
GCGTGCTGTGTGCAAGGACGTGCGTATCGGCACCATCCTCATCCAGACCAACCAGCTCACAGGG
GAGCCTGAGCTCCATTACCTGAGACTTCCCAAGGATATTAGTGATGACCATGTGATCCTGATGG
ACTGCACAGTATCTACGGGTGCTGCAGCCATGATGGCTGTACGTGTACTCCTGGACCATGATGT
GCCTGAGGACAAGATCTTTTTGCTATCCCTGCTTATGGCAGAGATGGGCGTACATTCTGTGGCC
TATGCATTCCCACGTGTGAGAATCATCACCACAGCCGTGGACAAGCGTGTCAATGACCTTTTCC
GTATCATCCCAGGCATTGGGAACTTTGGTGACCGGTACTTTGGGACAGATGCAGTCCCTGACGG
CAGTGATGATGATGAGGTTACCTCTGTGGGTTAATTCCCTGTCCGAGCTACTCTTACTTCTACC
CAGCCTTCTGTCCGGAGTCACAGACACGACACATTAACTTATTTGAATTTTAAAATGTTACCAA
TAATATTCAGTTTACACATTTTATAAAATAAATAAAGCTTCAGAAAATGATGGGTGTGGCAGAA
TAAA

hide sequence

RefSeq Acc Id:

XM_006235796 ⟹ XP_006235858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,052,368 - 189,064,752 (-)	NCBI
mRatBN7.2	3	168,674,852 - 168,687,244 (-)	NCBI
Rnor_6.0	3	177,066,022 - 177,078,452 (-)	NCBI
Rnor_5.0	3	180,775,487 - 180,788,073 (-)	NCBI

Sequence:

show sequence

GCGGGCCTGAATAAGGCAGGGGCCGCGCTTGTCTCTTGGGAGGGGTCGGTGCACGGCTTGCATC
CCTTCCTAAAGCCCGGGCGGCTCCGGGCATCTTCGTAGATGGGCAGATTGATCTCCACAACCTC
GTGGATCCTGGACAGGTTTCAGCAGCTCTCCAGCGTCTAGGGGCTTCCTGAGCCATGTGTCGGC
AACCCCCTGCCAGGGAGAGGGAGGTGGCAGGCGACCTGGAGGGCCCCAGCGGACGGAAGGCGGA
ACTGACCCAAGCCCCAGCTCTTAGAGGCGCCGAGAGTGGAAACCTGTTTGACCTCTTTAGCCTG
GGTTTCTGTCTCTAGTGGGTGCGCACTTGGCTCTGGGCTCACAGCTGGGCTGTAGGCGTGTTCG
ACCTTCCGAGTTCGTCGAAATTGAGCTCAAAGTTGCATATGGCGGCCAGTGGTACTTGCGAATG
TAAGATGGGGTGGTGATCTCCACCTGTCCGAGAGTTTGGGGGCCTTTGAGACTTTCGAGACTTT
CAGGAGAATGGAAGGGGTACTGTAGGAGATAAGGGTACTTGTCTTCACTCGGCTTGAACATCAC
TAGTAGCAACTCTAGGTCACGGCCGCCAGGGGGCGGTGGCCATGCTTGGAAACTATGTGGCACC
TCTTCCGGTCTGATTGTGCCAGTTGAAGCCAAATGTCTTCCGGCTTTGCTTTGCCCGCCTGAGT
TCACCGCCTGAGAAACTGTATACCCGGATGCCTTTAGGACCGCAGGTGCTGGCAGTGGATGAGC
AGCAATGCAGGGTCCTTGGACAGACTTCTCCCACCAGTGGGTACTGGGCGCTCACCCCGGAAGC
GCACCACCAGCCAGTGCAAGTCCGAGCCACCCCTGCTTCGTACAAGCAAACGAACCATTTACAC
AGCTGGGCGGCCACCATGGTACAACGAACATGGTACCCAGTCCAAGGAAGCCTTTGCCATTGGC
TTAGGAGGCGGCAGTGCGTCTGGGAAGACCACTGTGGCCAGGATGATCATTGAGGCCCTAGATG
TACCCTGGGTGGTCCTGCTGTCCATGGACTCCTTCTATAAGGTTCTGACACAGCAGCAGCAGGA
ACAGGCCGCCTGCAACAATTTCAACTTTGACCACCCTGATGCCTTCGACTTCGATCTCATCATT
TCCACCCTCAAGAAACTAAAGCAGGGCAGGAGTGTCCAAATACCCATCTATGATTTCACCACCC
ATAGCCGGAAAAAGGACTGGAAAACACTGTACGGTGCAAATGTCATCATCTTTGAGGGTATCAT
GGCCTTTGCTGACAAGACACTGCTAGAGCTTCTGGACATGAAGATCTTTGTGGACACAGACTCT
GACATCCGACTGGTACGGCGGCTGCGCAGGGACATCAGTGAGCGAGGCCGGGACATTGAGGGTG
TCATCAAGCAGTACAACAAGTTTGTCAAACCTGCTTTCGATCAGTACATCCAGCCCACCATGCG
CCTGGCAGATATCGTGGTGCCCAGAGGGAGCGGGAACACAGTAGCCATTGACCTGATTGTGCAG
CATGTTCACAGCCAGCTGGAAGAGAGGAAGCTGCGTTGGGATATGGCCGCGTTGGCCTCTGCTC
ACCAGTGCCATCCCCTTCCCCAGACACTGAGTGTCCTCAAGAGCACACCACAGGTACGAGGCAT
GCACACCATCATCAGGGACAAGGAGACTAGCCGGGACGAATTCATTTTCTACTCCAAAAGACTG
ATGCGGCTGCTTATTGAACACGCGCTGTCTTTCCTGCCCTTTCAGGACTGCACTGTACAGACTC
CACAGGGGCAGGACTACGTGGGAAAGTGCTACGCTGGAAAACAGATCACCGGCGTGTCCATTCT
GCGTGCGGGAGAAACCATGGAGCCTGCGCTGCGTGCTGTGTGCAAGGACGTGCGTATCGGCACC
ATCCTCATCCAGACCAACCAGCTCACAGGGGAGCCTGAGCTCCATTACCTGAGACTTCCCAAGG
ATATTAGTGATGACCATGTGATCCTGATGGACTGCACAGTATCTACGGGTGCTGCAGCCATGAT
GGCTGTACGTGTACTCCTGGACCATGATGTGCCTGAGGACAAGATCTTTTTGCTATCCCTGCTT
ATGGCAGAGATGGGCGTACATTCTGTGGCCTATGCATTCCCACGTGTGAGAATCATCACCACAG
CCGTGGACAAGCGTGTCAATGACCTTTTCCGTATCATCCCAGGCATTGGGAACTTTGGTGACCG
GTACTTTGGGACAGATGCAGTCCCTGACGGCAGTGATGATGATGAGGTTACCTCTGTGGGTTAA
TTCCCTGTCCGAGCTACTCTTACTTCTACCCAGCCTTCTGTCCGGAGTCACAGACACGACACAT
TAACTTATTTGAATTTTAAAATGTTACCAATAATATTCAGTTTACACATTTTATAAAATAAATA
AAGCTTCAGAAAATGATGGGTGTGGCAGAATAAA

hide sequence

RefSeq Acc Id:

XM_039105713 ⟹ XP_038961641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,052,368 - 189,064,921 (-)	NCBI
mRatBN7.2	3	168,674,852 - 168,687,453 (-)	NCBI

RefSeq Acc Id:

XM_039105714 ⟹ XP_038961642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,052,368 - 189,064,919 (-)	NCBI
mRatBN7.2	3	168,674,852 - 168,687,463 (-)	NCBI

RefSeq Acc Id:

XM_039105715 ⟹ XP_038961643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,052,368 - 189,064,919 (-)	NCBI
mRatBN7.2	3	168,674,852 - 168,687,457 (-)	NCBI

RefSeq Acc Id:

XM_039105717 ⟹ XP_038961645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,052,368 - 189,064,907 (-)	NCBI
mRatBN7.2	3	168,674,852 - 168,686,484 (-)	NCBI

RefSeq Acc Id:

XM_039105718 ⟹ XP_038961646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,053,517 - 189,064,921 (-)	NCBI
mRatBN7.2	3	168,676,001 - 168,687,513 (-)	NCBI

RefSeq Acc Id:

XM_039105719 ⟹ XP_038961647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,053,517 - 189,064,921 (-)	NCBI
mRatBN7.2	3	168,676,001 - 168,687,480 (-)	NCBI

RefSeq Acc Id:

XR_005501969

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,052,795 - 189,064,921 (-)	NCBI
mRatBN7.2	3	168,674,852 - 168,687,513 (-)	NCBI

RefSeq Acc Id:

XR_010064686

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,053,339 - 189,064,921 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102682	(Get FASTA)	NCBI Sequence Viewer
	XP_006235855	(Get FASTA)	NCBI Sequence Viewer
	XP_006235856	(Get FASTA)	NCBI Sequence Viewer
	XP_006235857	(Get FASTA)	NCBI Sequence Viewer
	XP_006235858	(Get FASTA)	NCBI Sequence Viewer
	XP_038961641	(Get FASTA)	NCBI Sequence Viewer
	XP_038961642	(Get FASTA)	NCBI Sequence Viewer
	XP_038961643	(Get FASTA)	NCBI Sequence Viewer
	XP_038961645	(Get FASTA)	NCBI Sequence Viewer
	XP_038961646	(Get FASTA)	NCBI Sequence Viewer
	XP_038961647	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88700	(Get FASTA)	NCBI Sequence Viewer
	EDL88701	(Get FASTA)	NCBI Sequence Viewer
	EDL88702	(Get FASTA)	NCBI Sequence Viewer
	EDL88703	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020695
	ENSRNOP00000020695.6
	ENSRNOP00000084349
	ENSRNOP00000084349.1
	ENSRNOP00000092533.2
	ENSRNOP00000094809
	ENSRNOP00000094809.2

RefSeq Acc Id:

NP_001102682 ⟸ NM_001109212

- UniProtKB:

D3ZYQ8 (UniProtKB/TrEMBL), A6KLZ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAPPGSAGAAPSPLQSTVTPDVPGRPAEQNETSCEDRSNAGSLDRLLPPVGTGRSPRKRTTSQ
CKSEPPLLRTSKRTIYTAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEALDVPWVV
LLSMDSFYKVLTQQQQEQAACNNFNFDHPDAFDFDLIISTLKKLKQGRSVQIPIYDFTTHSRKK
DWKTLYGANVIIFEGIMAFADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQY
NKFVKPAFDQYIQPTMRLADIVVPRGSGNTVAIDLIVQHVHSQLEERELSVRAALASAHQCHPL
PQTLSVLKSTPQVRGMHTIIRDKETSRDEFIFYSKRLMRLLIEHALSFLPFQDCTVQTPQGQDY
VGKCYAGKQITGVSILRAGETMEPALRAVCKDVRIGTILIQTNQLTGEPELHYLRLPKDISDDH
VILMDCTVSTGAAAMMAVRVLLDHDVPEDKIFLLSLLMAEMGVHSVAYAFPRVRIITTAVDKRV
NDLFRIIPGIGNFGDRYFGTDAVPDGSDDDEVTSVG

hide sequence

RefSeq Acc Id:	XP_006235858 ⟸ XM_006235796
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6GJU6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSNAGSLDRLLPPVGTGRSPRKRTTSQCKSEPPLLRTSKRTIYTAGRPPWYNEHGTQSKEAFA IGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTQQQQEQAACNNFNFDHPDAFDFDL IISTLKKLKQGRSVQIPIYDFTTHSRKKDWKTLYGANVIIFEGIMAFADKTLLELLDMKIFVDT DSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPTMRLADIVVPRGSGNTVAIDLI VQHVHSQLEERKLRWDMAALASAHQCHPLPQTLSVLKSTPQVRGMHTIIRDKETSRDEFIFYSK RLMRLLIEHALSFLPFQDCTVQTPQGQDYVGKCYAGKQITGVSILRAGETMEPALRAVCKDVRI GTILIQTNQLTGEPELHYLRLPKDISDDHVILMDCTVSTGAAAMMAVRVLLDHDVPEDKIFLLS LLMAEMGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFGTDAVPDGSDDDEVTSV G hide sequence

RefSeq Acc Id:	XP_006235857 ⟸ XM_006235795
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZVU1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSPPAYPGIRISGCWALGAESSNAGSLDRLLPPVGTGRSPRKRTTSQCKSEPPLLRTSKRTIY TAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTQQQQ EQAACNNFNFDHPDAFDFDLIISTLKKLKQGRSVQIPIYDFTTHSRKKDWKTLYGANVIIFEGI MAFADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPTM RLADIVVPRGSGNTVAIDLIVQHVHSQLEERKLRWDMAALASAHQCHPLPQTLSVLKSTPQVRG MHTIIRDKETSRDEFIFYSKRLMRLLIEHALSFLPFQDCTVQTPQGQDYVGKCYAGKQITGVSI LRAGETMEPALRAVCKDVRIGTILIQTNQLTGEPELHYLRLPKDISDDHVILMDCTVSTGAAAM MAVRVLLDHDVPEDKIFLLSLLMAEMGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGD RYFGTDAVPDGSDDDEVTSVG hide sequence

RefSeq Acc Id:	XP_006235855 ⟸ XM_006235793
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AIR8 (UniProtKB/TrEMBL), A0A8I5ZVU1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSPPAYPGIRISGCWALGAESSSNAGSLDRLLPPVGTGRSPRKRTTSQCKSEPPLLRTSKRTI YTAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTQQQ QEQAACNNFNFDHPDAFDFDLIISTLKKLKQGRSVQIPIYDFTTHSRKKDWKTLYGANVIIFEG IMAFADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPT MRLADIVVPRGSGNTVAIDLIVQHVHSQLEERKLRWDMAALASAHQCHPLPQTLSVLKSTPQVR GMHTIIRDKETSRDEFIFYSKRLMRLLIEHALSFLPFQDCTVQTPQGQDYVGKCYAGKQITGVS ILRAGETMEPALRAVCKDVRIGTILIQTNQLTGEPELHYLRLPKDISDDHVILMDCTVSTGAAA MMAVRVLLDHDVPEDKIFLLSLLMAEMGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFG DRYFGTDAVPDGSDDDEVTSVG hide sequence

RefSeq Acc Id:	XP_006235856 ⟸ XM_006235794
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5Y757 (UniProtKB/TrEMBL), A6KLZ3 (UniProtKB/TrEMBL), A0A8I5ZVU1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSPPAYPGIRISGCWALGAESSSNAGSLDRLLPPVGTGRSPRKRTTSQCKSEPPLLRTSKRTI YTAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTQQQ QEQAACNNFNFDHPDAFDFDLIISTLKKLKQGRSVQIPIYDFTTHSRKKDWKTLYGANVIIFEG IMAFADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPT MRLADIVVPRGSGNTVAIDLIVQHVHSQLEERELSVRAALASAHQCHPLPQTLSVLKSTPQVRG MHTIIRDKETSRDEFIFYSKRLMRLLIEHALSFLPFQDCTVQTPQGQDYVGKCYAGKQITGVSI LRAGETMEPALRAVCKDVRIGTILIQTNQLTGEPELHYLRLPKDISDDHVILMDCTVSTGAAAM MAVRVLLDHDVPEDKIFLLSLLMAEMGVHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGD RYFGTDAVPDGSDDDEVTSVG hide sequence

Ensembl Acc Id:

ENSRNOP00000020695 ⟸ ENSRNOT00000020695

RefSeq Acc Id:	XP_038961642 ⟸ XM_039105714
- Peptide Label:	isoform X2
- UniProtKB:	D3ZYQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961643 ⟸ XM_039105715
- Peptide Label:	isoform X3
- UniProtKB:	D3ZYQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961641 ⟸ XM_039105713
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GA89 (UniProtKB/TrEMBL), D3ZYQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961645 ⟸ XM_039105717
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZVU1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961646 ⟸ XM_039105718
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038961647 ⟸ XM_039105719
- Peptide Label:	isoform X10

Ensembl Acc Id:

ENSRNOP00000092533 ⟸ ENSRNOT00000108112

Ensembl Acc Id:

ENSRNOP00000084349 ⟸ ENSRNOT00000112230

Ensembl Acc Id:

ENSRNOP00000093317 ⟸ ENSRNOT00000113118

Ensembl Acc Id:

ENSRNOP00000083311 ⟸ ENSRNOT00000099097

Ensembl Acc Id:

ENSRNOP00000078158 ⟸ ENSRNOT00000106927

Ensembl Acc Id:

ENSRNOP00000094809 ⟸ ENSRNOT00000113965

Protein Domains

Phosphoribosyltransferase Phosphoribulokinase/uridine kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZYQ8-F1-model_v2	AlphaFold	D3ZYQ8	1-548	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692759

Promoter ID:

EPDNEW_R3282

Type:

multiple initiation site

Name:

Uckl1_1

Description:

uridine-cytidine kinase 1-like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	177,078,585 - 177,078,645	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565465	AgrOrtholog
BioCyc Gene	G2FUF-46273	BioCyc
Ensembl Genes	ENSRNOG00000050277	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020695	ENTREZGENE
	ENSRNOT00000020695.8	UniProtKB/TrEMBL
	ENSRNOT00000108112.2	UniProtKB/TrEMBL
	ENSRNOT00000112230	ENTREZGENE
	ENSRNOT00000112230.2	UniProtKB/TrEMBL
	ENSRNOT00000113965	ENTREZGENE
	ENSRNOT00000113965.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.2020	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	PRibTrfase_dom	UniProtKB/TrEMBL
	PRK/URK	UniProtKB/TrEMBL
	PRTase-like	UniProtKB/TrEMBL
	Uridine_kinase	UniProtKB/TrEMBL
KEGG Report	rno:499956	UniProtKB/TrEMBL
NCBI Gene	499956	ENTREZGENE
PANTHER	URIDINE KINASE	UniProtKB/TrEMBL
Pfam	PRK	UniProtKB/TrEMBL
	UPRTase	UniProtKB/TrEMBL
PhenoGen	Uckl1	PhenoGen
PRINTS	URIDINKINASE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000050277	RatGTEx
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
	SSF53271	UniProtKB/TrEMBL
UniProt	A0A8I5Y757	ENTREZGENE
	A0A8I5ZVU1	ENTREZGENE
	A0A8I6AIR8	ENTREZGENE
	A0A8I6AMB1_RAT	UniProtKB/TrEMBL
	A0A8I6GA89	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GJU6	ENTREZGENE, UniProtKB/TrEMBL
	A6KLZ1	ENTREZGENE, UniProtKB/TrEMBL
	A6KLZ3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZYQ8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Uckl1	uridine-cytidine kinase 1-like 1	RGD1565465_predicted	similar to Uridine-cytidine kinase 1-like 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565465_predicted	similar to Uridine-cytidine kinase 1-like 1 (predicted)	LOC499956	similar to Uridine-cytidine kinase 1-like 1	Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)