Ndufa13-ps1 (NADH:ubiquinone oxidoreductase subunit A13, pseudogene 1) - Rat Genome Database

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Gene: Ndufa13-ps1 (NADH:ubiquinone oxidoreductase subunit A13, pseudogene 1) Rattus norvegicus
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No known orthologs.
Symbol: Ndufa13-ps1
Name: NADH:ubiquinone oxidoreductase subunit A13, pseudogene 1
RGD ID: 1565358
Description: Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 28 and oncocytic carcinoma of the thyroid. Orthologous to human NDUFA13 (NADH:ubiquinone oxidoreductase subunit A13); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC314759; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-like; NADH:ubiquinone oxidoreductase subunit A13; Ndufa13; RGD1565358; similar to genes associated with retinoid-IFN-induced mortality 19
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Ndufa13  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8732,257,003 - 32,257,472 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl732,257,006 - 32,257,492 (+)EnsemblGRCr8
mRatBN7.2730,370,156 - 30,370,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl730,370,154 - 30,370,588 (+)EnsemblmRatBN7.2
Rnor_6.0736,826,357 - 36,826,837 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0736,876,603 - 36,877,083 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4732,937,677 - 32,938,111 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera727,440,592 - 27,441,072 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse:




Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23271731   PMID:23386605  


Genomics

Variants

.
Variants in Ndufa13-ps1
6 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:69
Interacting mature miRNAs:71
Transcripts:ENSRNOT00000027980
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)72154197735707405Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000029783   ⟹   ENSRNOP00000034694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl730,370,154 - 30,370,588 (+)Ensembl
Rnor_6.0 Ensembl736,826,360 - 36,826,788 (+)Ensembl
RefSeq Acc Id: XM_039080581   ⟹   XP_038936509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2730,370,139 - 30,370,634 (+)NCBI
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LZC5-F1-model_v2 AlphaFold F1LZC5 1-143 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565358 AgrOrtholog
BioCyc Gene G2FUF-34329 BioCyc
Ensembl Genes ENSRNOG00000021688 Ensembl, ENTREZGENE
NCBI Gene 314759 ENTREZGENE
PhenoGen Ndufa13-ps1 PhenoGen
RatGTEx ENSRNOG00000021688 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-03 Ndufa13-ps1  NADH:ubiquinone oxidoreductase subunit A13, pseudogene 1  Ndufa13  NADH:ubiquinone oxidoreductase subunit A13  Name and Symbol changed 629549 APPROVED
2015-11-30 Ndufa13  NADH:ubiquinone oxidoreductase subunit A13  Ndufa13  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Ndufa13  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13  RGD1565358_predicted  similar to genes associated with retinoid-IFN-induced mortality 19 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565358_predicted  similar to genes associated with retinoid-IFN-induced mortality 19 (predicted)  LOC314759  similar to genes associated with retinoid-IFN-induced mortality 19  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC314759  similar to genes associated with retinoid-IFN-induced mortality 19      Symbol and Name status set to provisional 70820 PROVISIONAL