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Gene: Rfxap (regulatory factor X-associated protein) Rattus norvegicus

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Symbol:

Rfxap

Name:

regulatory factor X-associated protein

RGD ID:

1565351

Description:

Predicted to enable DNA binding activity. Predicted to contribute to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of DNA-templated transcription. Predicted to be located in nuclear speck. Predicted to be part of RNA polymerase II transcription regulator complex. Predicted to be active in nucleus. Orthologous to human RFXAP (regulatory factor X associated protein); PARTICIPATES IN antigen processing and presentation pathway; primary immunodeficiency pathway; tuberculosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC499617; MGC112861; regulatory factor X-associated protein-like 1; Rfxapl1; similar to regulatory factor X-associated protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	141,158,214 - 141,162,397 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	141,158,215 - 141,162,397 (-)	Ensembl				GRCr8
mRatBN7.2	2	139,008,052 - 139,012,235 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	139,008,055 - 139,012,259 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	145,582,917 - 145,587,100 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	143,694,357 - 143,698,540 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	138,326,790 - 138,330,973 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	144,003,453 - 144,007,636 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	144,003,454 - 144,007,636 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	2	144,213,403 - 144,217,600 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	163,630,967 - 163,635,150 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	144,036,652 - 144,040,835 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	133,492,910 - 133,497,093 (-)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

MHC class II deficiency (ISO)

MHC CLASS II DEFICIENCY 1 (ISO)

MHC CLASS II DEFICIENCY 4 (ISO)

severe combined immunodeficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

4-hydroxyphenyl retinamide (ISO)

acetaldehyde (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

arsane (ISO)

arsenic acid (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

curcumin (ISO)

cyclosporin A (ISO)

dimethylarsinic acid (ISO)

dorsomorphin (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

hydrogen peroxide (ISO)

inulin (ISO)

iron dichloride (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methylarsonic acid (ISO)

methylmercury chloride (ISO)

nicotine (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

propiconazole (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nuclear speck (IEA,ISO)

nucleus (IBA,IEA,ISO)

RNA polymerase II transcription regulator complex (IEA,ISO)

Molecular Function

DNA binding (IEA,ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

antigen processing and presentation pathway (IEA)

primary immunodeficiency pathway (IEA)

tuberculosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9118943	PMID:9806546	PMID:11486010

Genomics

Comparative Map Data

Rfxap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	141,158,214 - 141,162,397 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	141,158,215 - 141,162,397 (-)	Ensembl				GRCr8
mRatBN7.2	2	139,008,052 - 139,012,235 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	139,008,055 - 139,012,259 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	145,582,917 - 145,587,100 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	143,694,357 - 143,698,540 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	138,326,790 - 138,330,973 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	144,003,453 - 144,007,636 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	144,003,454 - 144,007,636 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	2	144,213,403 - 144,217,600 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	163,630,967 - 163,635,150 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	144,036,652 - 144,040,835 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	133,492,910 - 133,497,093 (-)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

RFXAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	36,819,222 - 36,829,104 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	36,819,222 - 36,829,104 (+)	Ensembl			hg38	GRCh38
GRCh37	13	37,393,359 - 37,403,241 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	36,291,339 - 36,301,740 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	13	36,291,338 - 36,301,740	NCBI
Celera	13	18,460,633 - 18,471,030 (+)	NCBI		Celera
Cytogenetic Map	13	q13.3	NCBI
HuRef	13	18,205,122 - 18,215,519 (+)	NCBI		HuRef
CHM1_1	13	37,360,885 - 37,371,280 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	36,038,804 - 36,048,682 (+)	NCBI		T2T-CHM13v2.0

Rfxap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	54,710,536 - 54,715,212 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	54,710,536 - 54,715,212 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	54,803,115 - 54,807,791 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	54,803,115 - 54,807,791 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	54,607,037 - 54,611,713 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	54,892,123 - 54,895,700 (-)	NCBI		MGSCv36	mm8
Celera	3	54,525,009 - 54,529,685 (-)	NCBI		Celera
Cytogenetic Map	3	C	NCBI
cM Map	3	25.69	NCBI

Rfxap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	9,200,117 - 9,208,811 (-)	Ensembl
ChiLan1.0	NW_004955431	9,200,006 - 9,209,588 (-)	NCBI	ChiLan1.0	ChiLan1.0

RFXAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	36,342,376 - 36,352,292 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	27,448,574 - 27,458,444 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	18,029,873 - 18,039,752 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	36,461,048 - 36,470,935 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	36,461,048 - 36,470,935 (+)	Ensembl			panPan2	panpan1.1

RFXAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	3,861,927 - 3,871,854 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	3,862,069 - 3,870,994 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	3,892,132 - 3,979,893 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	3,960,383 - 4,048,294 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	25	3,863,140 - 3,872,274 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	3,860,232 - 3,870,163 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	3,926,754 - 3,935,896 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rfxap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	164,986,332 - 164,992,679 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	30,959,448 - 30,965,842 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	30,959,399 - 30,964,863 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RFXAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	11	12,660,306 - 12,695,137 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	12,607,424 - 12,642,544 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RFXAP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	15,348,993 - 15,358,842 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	15,349,233 - 15,359,800 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666057	28,926,486 - 28,936,329 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rfxap
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	399,783 - 407,095 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624776	400,197 - 406,894 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rfxap
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	99,596,035 - 99,600,278 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rfxap
43 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	305
Count of miRNA genes:	197
Interacting mature miRNAs:	226
Transcripts:	ENSRNOT00000000101
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	105628029	150628029	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	124103798	154505346	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	120039407	159440891	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	100807373	145807373	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	106869825	151869825	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	120039407	151869825	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	93602631	145807373	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	139067258	184067258	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
7488933	Bp368	Blood pressure QTL 368		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	104957381	149957381	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	120339555	165339555	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	114032149	150226270	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	114440891	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	116804572	161804572	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	61051541	143746880	Rat

Markers in Region

RH133124

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	139,008,058 - 139,008,254 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	144,213,421 - 144,213,616	NCBI	Rnor6.0
Rnor_6.0	2	144,003,460 - 144,003,655	NCBI	Rnor6.0
Rnor_5.0	2	163,630,974 - 163,631,169	UniSTS	Rnor5.0
RGSC_v3.4	2	144,036,659 - 144,036,854	UniSTS	RGSC3.4
Celera	2	133,492,917 - 133,493,112	UniSTS
RH 3.4 Map	2	860.5	UniSTS
Cytogenetic Map	2	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
20	1	30	119	69	62	36	81	36	12	259	145	11	94	58	75	26	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001044263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000000101 ⟹ ENSRNOP00000000101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	144,213,403 - 144,217,600 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092028 ⟹ ENSRNOP00000071315

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	144,003,454 - 144,007,636 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099674 ⟹ ENSRNOP00000093212

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	141,158,215 - 141,162,397 (-)	Ensembl
mRatBN7.2 Ensembl	2	139,008,055 - 139,012,259 (-)	Ensembl

RefSeq Acc Id:

NM_001044263 ⟹ NP_001037728

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	141,158,214 - 141,162,397 (-)	NCBI
mRatBN7.2	2	139,008,052 - 139,012,235 (-)	NCBI
Rnor_6.0	2	144,003,453 - 144,007,636 (-)	NCBI
Rnor_5.0	2	163,630,967 - 163,635,150 (-)	NCBI
RGSC_v3.4	2	144,036,652 - 144,040,835 (-)	RGD
Celera	2	133,492,910 - 133,497,093 (-)	RGD

Sequence:

show sequence

CCCGGACGTACGGCGGATCGCTTGTGAAGTCCCGTTGTGTTTTTCAAGTGCTGACGGGCCGCGG
TGGCGGACCCTGGCTCTGGCGGCATCACGGAGGCGCAAGCTGTGTCCGAGGGCTCCAGGCCGGG
CACCACCAGTCCCCGGACGGCCCCTCCCGTGACGGTGCTGGTGATGCGACAGGACGAGGCCGCG
GCGGACAGCGCTCTGAGGCCAGGTCTAGCGGGGAGCGAGGCGGCGGCGGACGCCGAGGATGAGG
CGGGGGAGGACGACGCCGACCTCCTGGACACATCGGACCCGGCGGGCGGCGGCGAGAGTGCGGC
CAGCCCCGAGGAGCTGGAGGACGAGGATGCCGAGGGTGGCGGCGCGGCGCGCAGACGAGGCTCG
AAGACCTGCACCTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGTAAGCCCT
GGATGTGTAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGACCA
GGCACAGGGCTCTGGTGGCCCCGCCGCGGCCAGCACAGGCAATGTCAAACTGGAGGAAAGCACA
GAAAACATACTCTCCATTGTCAAACAGAGAACGGGATCTTTTGGGGATCGCCCTGCAAGACCTA
CTCTATTAGAGCAAGTGTTAAATCAGAAAAGACTGTCATTACTAAGAAGTCCAGAAGTTGTCCA
GTTTTTACAGAAACAGCAGCAGCTACTCAATCAACAAGTTTTGGAGCAAAGACAGCAGCAGTTC
CCAGGAGCTCCAGTGTGAGGGCTTACCAGGAAGTCTGCTGTGCTTTGCCTGACTGATGGATAGG
TGTGCCTTTAGACCAAGACGATGCCCTGATAATCAGGCGTTGGTGGTGCACACCTGGAAGCCCT
GAACTTGGAAAACTGAGCCAAGAGGATCCCAGATTCAAAGCCAGCCTGGGCTACATAGCAAGTT
CCTTTCTCAAAAAAGAGAGAGAGAGAGAGAAGAAAACTATTTCCTGTTAAGTGTGCGTGTGCAT
TTGAGGATAATAAGTATTGAGTTTTTGCATTTCATTGTATCATATCACCCTGAGTCTAAGTCTC
CTGTATGGTCTTTAATGTTTTTCTTCAGTTCTGCTCACTGAAGCTAAGGAGGCAGTTACTTCCT
GTGGAAGTCATAAAGGTAATAGTAATATCACATCACCTGGTGCTGTGCTCCTCATCCGGACGCA
CTGGGAAGGAATGGATGTTGGGTTGTCGCAGTGACCTGGAGCTAGCTAGGCTGTAATGAAGGGC
CGGGAATCCTTACTCAGCCCACCAAGGCCAGGGCAGGTTTGGTTTTCTTATAGTCATTCTTAAC
GTTCGTCATAAAGGAGATCCCGAAGGGAGAGCAACGCTCACGTATGACAAGGCCAAATGTGTCA
GTGGATTGACCCCTAAGTTCTGAAGTGTAAGCGACGTTAAACTCAGAGGGCTATGGGCGCAGTT
CAGCCTTGCTGCGCCCCCCTAGCCTGTGCGAGGCCCTCTGCCTGCCCACCCTCACCACCATATA
AACAAATGCAGGGAAGAGAGTGACGGTCTTCATTGTGTTGTTCGTGTGTCTGAAAAAGACCTTT
GCCAAAATTATCCATTAAAGGGCAGCTGTTAAACTTTGAAAAAAAAAAAAAAAAAAAAAAAAAA
A

hide sequence

Protein Sequences


Protein RefSeqs	NP_001037728	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98816	(Get FASTA)	NCBI Sequence Viewer
	EDM14912	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000093212
	ENSRNOP00000093212.1

RefSeq Acc Id:

NP_001037728 ⟸ NM_001044263

- UniProtKB:

Q4KM44 (UniProtKB/TrEMBL), F1LLY7 (UniProtKB/TrEMBL), A0A8I6AJ64 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRQDEAAADSALRPGLAGSEAAADAEDEAGEDDADLLDTSDPAGGGESAASPEELEDEDAEGGG
AARRRGSKTCTYEGCRETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSDQAQGSGGPAAASTGN
VKLEESTENILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLRSPEVVQFLQKQQQLLNQQVL
EQRQQQFPGAPV

hide sequence

Ensembl Acc Id:

ENSRNOP00000071315 ⟸ ENSRNOT00000092028

Ensembl Acc Id:

ENSRNOP00000093212 ⟸ ENSRNOT00000099674

Ensembl Acc Id:

ENSRNOP00000000101 ⟸ ENSRNOT00000000101

Protein Domains

Regulatory factor X-associated protein RFXANK-

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KM44-F1-model_v2	AlphaFold	Q4KM44	1-204	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691330

Promoter ID:

EPDNEW_R1855

Type:

single initiation site

Name:

Rfxapl1_1

Description:

regulatory factor X-associated protein-like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	144,007,660 - 144,007,720	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565351	AgrOrtholog
BioCyc Gene	G2FUF-53071	BioCyc
Ensembl Genes	ENSRNOG00000028382	Ensembl
	ENSRNOG00000056028	Ensembl
	ENSRNOG00000064105	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000099674	ENTREZGENE
	ENSRNOT00000099674.2	UniProtKB/TrEMBL
Gene3D-CATH	6.10.290.30	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7377196	IMAGE-MGC_LOAD
InterPro	RFXAP_C_sf	UniProtKB/TrEMBL
	RFXAP_RFXANK_bd	UniProtKB/TrEMBL
KEGG Report	rno:499617	UniProtKB/TrEMBL
MGC_CLONE	MGC:112861	IMAGE-MGC_LOAD
NCBI Gene	499617	ENTREZGENE
PANTHER	PTHR15110	UniProtKB/TrEMBL
	REGULATORY FACTOR X-ASSOCIATED PROTEIN	UniProtKB/TrEMBL
Pfam	RFXA_RFXANK_bdg	UniProtKB/TrEMBL
PhenoGen	Rfxap	PhenoGen
RatGTEx	ENSRNOG00000028382	RatGTEx
	ENSRNOG00000056028	RatGTEx
	ENSRNOG00000064105	RatGTEx
UniProt	A0A8I6AJ64	ENTREZGENE, UniProtKB/TrEMBL
	F1LLY7	ENTREZGENE
	Q4KM44	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F1LLY7	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Rfxap	regulatory factor X-associated protein	LOC499617	similar to regulatory factor X-associated protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC499617	similar to regulatory factor X-associated protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)