4933412E24Rikl (RIKEN cDNA 4933412E24 gene like) - Rat Genome Database

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Gene: 4933412E24Rikl (RIKEN cDNA 4933412E24 gene like) Rattus norvegicus
Analyze
Symbol: 4933412E24Rikl
Name: RIKEN cDNA 4933412E24 gene like
RGD ID: 1564901
Description: Orthologous to human CXorf49 (chromosome X open reading frame 49) and CXorf49B (chromosome X open reading frame 49B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC500876; LOC500876; LOC500876; uncharacterized protein CXorf49 homolog
RGD Orthologs
Human
Mouse
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8793,505,701 - 93,507,434 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl793,505,074 - 93,507,564 (-)EnsemblGRCr8
mRatBN7.2791,616,297 - 91,618,030 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl791,616,126 - 91,618,033 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx793,479,842 - 93,481,575 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0795,681,048 - 95,682,781 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0795,553,263 - 95,554,996 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07100,381,164 - 100,382,897 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7100,381,170 - 100,382,897 (-)Ensemblrn6Rnor6.0
Rnor_5.07100,956,876 - 100,958,609 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4796,869,842 - 96,871,575 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera788,355,662 - 88,357,395 (-)NCBICelera
Cytogenetic Map7q33NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
4933412E24Rikl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8793,505,701 - 93,507,434 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl793,505,074 - 93,507,564 (-)EnsemblGRCr8
mRatBN7.2791,616,297 - 91,618,030 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl791,616,126 - 91,618,033 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx793,479,842 - 93,481,575 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0795,681,048 - 95,682,781 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0795,553,263 - 95,554,996 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07100,381,164 - 100,382,897 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7100,381,170 - 100,382,897 (-)Ensemblrn6Rnor6.0
Rnor_5.07100,956,876 - 100,958,609 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4796,869,842 - 96,871,575 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera788,355,662 - 88,357,395 (-)NCBICelera
Cytogenetic Map7q33NCBI
CXorf49C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X71,667,546 - 71,671,527 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX71,667,542 - 71,671,524 (+)Ensemblhg38GRCh38
GRCh37X70,887,396 - 70,891,377 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq13.1NCBI
HuRefX64,702,895 - 64,705,681 (+)NCBIHuRef
CHM1_1X70,780,066 - 70,783,781 (+)NCBICHM1_1
T2T-CHM13v2.0X70,100,813 - 70,104,795 (+)NCBIT2T-CHM13v2.0
4933412E24Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391559,886,715 - 59,888,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1559,886,715 - 59,888,462 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381560,014,866 - 60,016,618 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1560,014,866 - 60,016,613 (-)Ensemblmm10GRCm38
MGSCv371559,846,421 - 59,848,173 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361559,844,547 - 59,846,301 (-)NCBIMGSCv36mm8
Celera1561,546,011 - 61,547,763 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.58NCBI
LOC103232167
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X61,478,735 - 61,482,451 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660653,349,944 - 3,353,914 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in 4933412E24Rikl
7 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:27
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000006510
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78211124596700643Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78211124595485241Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
5 4 10 11 8 15 2 67 2 3 93 78 8 4 43 13

Sequence


Ensembl Acc Id: ENSRNOT00000006510   ⟹   ENSRNOP00000006510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl793,505,074 - 93,507,564 (-)Ensembl
mRatBN7.2 Ensembl791,616,126 - 91,618,033 (-)Ensembl
Rnor_6.0 Ensembl7100,381,170 - 100,382,897 (-)Ensembl
RefSeq Acc Id: NM_001145141   ⟹   NP_001138613
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8793,505,701 - 93,507,434 (-)NCBI
mRatBN7.2791,616,297 - 91,618,030 (-)NCBI
Rnor_6.07100,381,164 - 100,382,897 (-)NCBI
Rnor_5.07100,956,876 - 100,958,609 (-)NCBI
RGSC_v3.4796,869,842 - 96,871,575 (-)RGD
Celera788,355,662 - 88,357,395 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001138613 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05881 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006510
  ENSRNOP00000006510.4
GenBank Protein Q3KR64 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001138613   ⟸   NM_001145141
- UniProtKB: Q3KR64 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006510   ⟸   ENSRNOT00000006510

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3KR64-F1-model_v2 AlphaFold Q3KR64 1-510 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695361
Promoter ID:EPDNEW_R5885
Type:single initiation site
Name:LOC500876_1
Description:LOC500876
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07100,382,909 - 100,382,969EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564901 AgrOrtholog
BioCyc Gene G2FUF-33266 BioCyc
Ensembl Genes ENSRNOG00000004914 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006510 ENTREZGENE
  ENSRNOT00000006510.6 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7114180 IMAGE-MGC_LOAD
InterPro DUF4641 UniProtKB/Swiss-Prot
KEGG Report rno:500876 UniProtKB/Swiss-Prot
MGC_CLONE MGC:125036 IMAGE-MGC_LOAD
NCBI Gene 500876 ENTREZGENE
PANTHER PTHR31866 UniProtKB/Swiss-Prot
  PTHR31866:SF4 UniProtKB/Swiss-Prot
Pfam DUF4641 UniProtKB/Swiss-Prot
PhenoGen 4933412E24Rikl PhenoGen
RatGTEx ENSRNOG00000004914 RatGTEx
UniProt CX049_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 4933412E24Rikl  RIKEN cDNA 4933412E24 gene like  LOC500876  LOC500876  Symbol and Name Changed 1299863 APPROVED
2006-02-09 LOC500876  LOC500876      Symbol and Name status set to provisional 70820 PROVISIONAL