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Gene: Cd84 (CD84 molecule) Rattus norvegicus

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Symbol:

Cd84

Name:

CD84 molecule

RGD ID:

1564553

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including regulation of cytokine production; regulation of leukocyte activation; and regulation of signal transduction. Predicted to be located in plasma membrane. Predicted to be active in external side of plasma membrane. Orthologous to human CD84 (CD84 molecule); INTERACTS WITH acetamide; alpha-Zearalanol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CD84 antigen; LOC501872; RGD1564553; similar to CD84 leukocyte antigen; SLAM family member 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD84 (CD84 molecule)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cd84 (CD84 antigen)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cd84 (CD84 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD84 (CD84 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CD84 (CD84 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cd84 (CD84 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD84 (CD84 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CD84 (CD84 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cd84 (CD84 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cd84 (CD84 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FCMR (Fc mu receptor)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CD84 (CD84 molecule)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cd84 (CD84 antigen)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zmp:0000001161	Alliance	DIOPT (InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-102c8.3	Alliance	DIOPT (InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-239m17.1	Alliance	DIOPT (InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-239m17.1	Alliance	DIOPT (InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-253d23.3	Alliance	DIOPT (InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-236g6.1	Alliance	DIOPT (InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:cabz01074946.1	Alliance	DIOPT (Hieranoid\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	si:dkey-253d23.4	Alliance	DIOPT (InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	LOC100332737 (novel protein with Immunoglobulin V-set domains)	Alliance	DIOPT (InParanoid\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC105945582	Alliance	DIOPT (InParanoid\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC101731889	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cd84	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100497612	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100497768	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC101732875	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ly9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC101731889	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC105948297	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100497454	Alliance	DIOPT (OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC101730355	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100488866	Alliance	DIOPT (OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,859,979 - 86,899,984 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	86,859,990 - 86,894,318 (+)	Ensembl				GRCr8
mRatBN7.2	13	84,327,580 - 84,367,153 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	84,327,553 - 84,362,076 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	86,850,078 - 86,864,481 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	88,250,353 - 88,264,756 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	85,435,450 - 85,449,892 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	90,241,369 - 90,283,625 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	90,244,681 - 90,277,865 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	101,522,740 - 101,523,225 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	13	94,797,653 - 94,800,870 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	87,846,411 - 87,859,987 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	83,959,458 - 83,973,468 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Spontaneous Abortions (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amphotericin B (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

choline (ISO)

Cuprizon (EXP)

cyclophosphamide (ISO)

decabromodiphenyl ether (EXP)

diarsenic trioxide (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dimethylarsinic acid (ISO)

disodium selenite (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

gamma-hexachlorocyclohexane (ISO)

indole-3-methanol (EXP)

inulin (ISO)

L-methionine (ISO)

lidocaine (EXP)

lipopolysaccharide (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methylarsonic acid (ISO)

nickel atom (ISO)

nitrates (ISO)

omega-6 fatty acid (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

pioglitazone (ISO)

pirinixic acid (ISO)

prednisolone (ISO)

silicon dioxide (ISO)

sirolimus (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adaptive immune response (IEA)

immune system process (IEA)

innate immune response (IEA)

negative regulation of granulocyte macrophage colony-stimulating factor production (IEA,ISO)

negative regulation of interleukin-10 production (ISO)

negative regulation of interleukin-18 production (IEA,ISO)

negative regulation of interleukin-6 production (ISO)

negative regulation of mast cell activation (IEA,ISO)

negative regulation of mast cell degranulation (IEA,ISO)

obsolete positive regulation of NF-kappaB transcription factor activity (ISO)

positive regulation of MAPK cascade (ISO)

positive regulation of monocyte chemotactic protein-1 production (ISO)

positive regulation of tumor necrosis factor production (ISO)

regulation of lipopolysaccharide-mediated signaling pathway (ISO)

regulation of macrophage activation (ISO)

regulation of store-operated calcium entry (IEA,ISO)

Cellular Component

membrane (IEA)

plasma membrane (IEA,ISO)

Molecular Function

identical protein binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17563375	PMID:20628063	PMID:22068234	PMID:23376485

Genomics

Comparative Map Data

Cd84
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,859,979 - 86,899,984 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	86,859,990 - 86,894,318 (+)	Ensembl				GRCr8
mRatBN7.2	13	84,327,580 - 84,367,153 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	84,327,553 - 84,362,076 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	86,850,078 - 86,864,481 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	88,250,353 - 88,264,756 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	85,435,450 - 85,449,892 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	90,241,369 - 90,283,625 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	90,244,681 - 90,277,865 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	101,522,740 - 101,523,225 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	13	94,797,653 - 94,800,870 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	87,846,411 - 87,859,987 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	83,959,458 - 83,973,468 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

CD84
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	160,541,098 - 160,579,496 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	160,541,095 - 160,579,516 (-)	Ensembl			hg38	GRCh38
GRCh37	1	160,510,888 - 160,549,286 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	158,782,419 - 158,815,889 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	157,328,867 - 157,362,336	NCBI
Celera	1	133,579,617 - 133,618,049 (-)	NCBI		Celera
Cytogenetic Map	1	q23.3	NCBI
HuRef	1	131,867,102 - 131,905,535 (-)	NCBI		HuRef
CHM1_1	1	161,906,252 - 161,944,676 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	159,678,187 - 159,716,598 (-)	NCBI		T2T-CHM13v2.0

Cd84
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	171,667,261 - 171,718,288 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	171,667,265 - 171,718,285 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	171,839,697 - 171,890,718 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	171,839,697 - 171,890,718 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	173,770,710 - 173,820,849 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	173,677,279 - 173,725,361 (+)	NCBI		MGSCv36	mm8
Celera	1	174,696,562 - 174,739,215 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.54	NCBI

Cd84
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	12,281,686 - 12,313,912 (-)	Ensembl
ChiLan1.0	NW_004955468	12,280,467 - 12,313,976 (-)	NCBI	ChiLan1.0	ChiLan1.0

CD84
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	89,271,292 - 89,309,619 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	89,011,316 - 89,049,628 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	135,901,375 - 135,934,791 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	139,819,254 - 139,857,559 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	139,819,254 - 139,857,559 (-)	Ensembl			panPan2	panpan1.1

CD84
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,702,788 - 21,727,373 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,702,494 - 21,759,668 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	21,777,612 - 21,801,443 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	21,820,016 - 21,843,908 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	21,819,868 - 21,884,990 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,707,065 - 21,730,941 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	22,121,158 - 22,144,967 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	22,530,871 - 22,554,757 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cd84
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	6,620,544 - 6,643,254 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936740	123,885 - 134,097 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936740	111,296 - 133,847 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD84
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,932,229 - 89,969,665 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	89,932,020 - 89,980,476 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	97,824,304 - 97,869,262 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD84
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	3,358,751 - 3,397,075 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	3,358,827 - 3,389,895 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	2,409,457 - 2,447,217 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cd84
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	709,235 - 740,846 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	709,169 - 742,591 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cd84
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	50,995,699 - 51,019,726 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cd84
782 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	82
Count of miRNA genes:	77
Interacting mature miRNAs:	81
Transcripts:	ENSRNOT00000050547
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	157	91	90	59	92	59	6	354	191	11	135	80	91	31	9	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001412898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001412899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001412900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001412901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000050547 ⟹ ENSRNOP00000042936

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	84,346,742 - 84,362,076 (+)	Ensembl
Rnor_6.0 Ensembl	13	90,260,783 - 90,277,668 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078162 ⟹ ENSRNOP00000072708

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	86,859,990 - 86,894,318 (+)	Ensembl
mRatBN7.2 Ensembl	13	84,330,640 - 84,362,076 (+)	Ensembl
Rnor_6.0 Ensembl	13	90,244,681 - 90,277,865 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114683 ⟹ ENSRNOP00000085386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	86,859,990 - 86,879,680 (+)	Ensembl
mRatBN7.2 Ensembl	13	84,327,553 - 84,347,283 (+)	Ensembl

RefSeq Acc Id:

NM_001412898 ⟹ NP_001399827

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,859,990 - 86,894,318 (+)	NCBI
mRatBN7.2	13	84,327,591 - 84,361,922 (+)	NCBI

RefSeq Acc Id:

NM_001412899 ⟹ NP_001399828

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,859,990 - 86,894,318 (+)	NCBI
mRatBN7.2	13	84,327,591 - 84,361,922 (+)	NCBI

RefSeq Acc Id:

NM_001412900 ⟹ NP_001399829

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,859,990 - 86,894,318 (+)	NCBI
mRatBN7.2	13	84,327,591 - 84,361,922 (+)	NCBI

RefSeq Acc Id:

NM_001412901 ⟹ NP_001399830

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,859,990 - 86,894,318 (+)	NCBI
mRatBN7.2	13	84,327,591 - 84,361,922 (+)	NCBI

RefSeq Acc Id:

XM_008769757 ⟹ XP_008767979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,863,987 - 86,899,984 (+)	NCBI
mRatBN7.2	13	84,331,575 - 84,361,922 (+)	NCBI
Rnor_6.0	13	90,245,615 - 90,278,392 (+)	NCBI

Sequence:

show sequence

TTTTTTTTTATCCCACCCCCAATTTGTTGAAAATAGAAGTATTTTCAACATATGTCCTGGCTAT
AGTTTCACCTCCCTAAACTCCTCCCAGTGTCCTCCTCCCCTCTAGATCCACTCCTTTTCTGTCC
CTCATTAGAATAGAACAGGCTTCTAAATAAGCAAACATGTCAAAATAAAATATAATGTGATGAA
ACAAAAACCACCACACTGAGGCTGAACAATACAGTCCAACAGGAGGAAAGAAGCCAAGAGCAGA
CACAAGACTGTCTCATTCACACACTCAGGAGTCCCTTAAAATTATTAAGACATGTGCAGAGCCA
GGGTCTGAAGCAATAGAAAGAGAGCCAGACTGTTCGATGGTGCTAAATGGGATTCTTGGGGAGT
CAGTTACTCTCCCCGTAGATATTAAAGATGGCCAGAAAATTAATAACATTGCCTGGACTTCTAA
ATCATCTGTTGCTTTTGTAACACCAAAAGTCGGAGGACATGAACTTACCGTAACCCAGGACATT
TATAAAGGACGACTAGAAGTCACAAATCAGACCTATAACCTGATCATTAGAAACCTGAGGATGA
AAGATGCAGGTACTTACAAAGCAGACATCAATGAAAAGAACCGTGAGAAAACCATCACCAAGAT
CTACTGCCTTCAAATCTACTCTCGGCTGGCAAAACCAAAAATTACAAAGAGTTCAATAACATCT
TTGAACAATACCTGTAATATCACACTGACATGCTCTGTGGAGGAAGAAGAAAAGAATGTGGTGT
ATAGTTGGAGTCCCTCTGGAGAGGAAAGCAATGTCCTTCAAATCTTCCACTCCCCTATGGACCA
AAAACTGACTTATACATGTACAGCCTCGAACCCTGTCAGCAACAATTCTGACTCCGTCACTGTG
CAACAGCCATGTACAGACTCTCCCAGCTTCCATCCTTACCATGGTGTGTTGCCAGGGGGGCTGG
CCGCGCTCTCTCTGCTTATGCTCATTCCAGTGGTGGCACTTCTGTTCCATTTGTACAAGAGAAG
GAGAGGTAGGATTGTCCTGGAAGCAGATGATGTCTCAAAGAAAATAATATACTCTGCAGTTTCA
AGAAATGCCCATCTCACAGAGTCCAGAATCTATGATGAAATCCCACAGTCCACGATGCTGTCCC
GTACGGAAGAGCCCGTGACCACCATTTATTCCTCGGTGCAGCTTTATGAGAAGACGGGGAAAAC
CAACATGAAGGACGAAAGACCACCCAAGACTTTGTGTAATGAAATTGTTGTCTAGGTGAGCGGG
CAGTGTTCTCCCTCTGGAAACTGAGTTACAACCACTGTGAGAACAGGGGTCCCGAAGACCTAGG
CCTTCTCTGGCTACCCCCTTACCAGAACATTGCAAATACCACATTCCAGCATGCAAGCAGAGCA
GGAAACCTTCTGTTGTTGGGCATTCCTTGTACTCAACAACCTTTGTATTCCTTGTTAGGCTTGT
GGACACTTTCCCTAACTCGTCAAATCCTTCCTATGAGAACAATAAGACACACTCCCTGAAATGG
CACCTCACAAACTCTTTCACTTCGCCGGGCATATAAAAATTGATTTTTTTGGCACAAAGGATGA
AATCATCCATGTCTCTAGAAGACTGAATATGGATGGAAGATTCTCCTGTCAATATGTAACATCA
CTGTCCAACAGCTGTGGGAAGAAATCAGTCAATATTGTGAATACCTGTAACACACCACGGCATA
CCAGCTGGATCTTCTATGCAGAGTCAACCTGTGTAAGGAGCCCTGAGGCAAGGCCTCCACCAGT
CGCTACAATGCCTTAAGTAATTTAGGAATGGCATCTTTAAGGTATATGTTATCCCTTACTTGAA
AGCATGGCATAGCCAACCTAGTGTAGGCTACACATTCATTCCTCCACTCAAGAACCATCGTGCA
GATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTCTCTCCCTACTTATTCAATATAGTT
CTTGAAGTTCT

hide sequence

RefSeq Acc Id:

XM_017598906 ⟹ XP_017454395

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,859,982 - 86,899,984 (+)	NCBI
mRatBN7.2	13	84,327,581 - 84,367,153 (+)	NCBI
Rnor_6.0	13	90,241,370 - 90,283,625 (+)	NCBI

Sequence:

show sequence

AAAGCCTATCAGACCCAGTCAGGCACAGCTGTGGCAGGCAAATTCAACTCTTCTGCCTGGGCCC
TGACCTAAACTGCTTAATATGGCCCCACCAAGTCCATAAGGATGGGGAAATGTGTGGAAACCTC
ATAGGGTGCCACAGGAGAAGGAAACCAGACAGCTGAGGAAGGGATACATCTTCACTTTGTATTG
GAGCTTGCTAGCATTTTCCCTTAGCTGCTAACTCTCGAGATCAACTGGTGACACAAGTGAACTG
CTGCAGAGTTTTGGAGAACCTGTTCACCCTTTGTTTAAAGCCTCCGGAAACATCAAACTGAAGT
GAAAGCAGCTACTAGACCAGTTCTTTTTCTCCACAAGACGGGAGTCTGACTGGAGATGGCCCAG
CACCATCTATGGATCTGGCTCCTTTGCCTGCAAACCTGGTCTGAAGCAATAGAAAGAGAGCCAG
ACTGTTCGATGGTGCTAAATGGGATTCTTGGGGAGTCAGTTACTCTCCCCGTAGATATTAAAGA
TGGCCAGAAAATTAATAACATTGCCTGGACTTCTAAATCATCTGTTGCTTTTGTAACACCAAAA
GTCGGAGGACATGAACTTACCGTAACCCAGGACATTTATAAAGGACGACTAGAAGTCACAAATC
AGACCTATAACCTGATCATTAGAAACCTGAGGATGAAAGATGCAGGTACTTACAAAGCAGACAT
CAATGAAAAGAACCGTGAGAAAACCATCACCAAGATCTACTGCCTTCAAATCTACTCTCGGCTG
GCAAAACCAAAAATTACAAAGAGTTCAATAACATCTTTGAACAATACCTGTAATATCACACTGA
CATGCTCTGTGGAGGAAGAAGAAAAGAATGTGGTGTATAGTTGGAGTCCCTCTGGAGAGGAAAG
CAATGTCCTTCAAATCTTCCACTCCCCTATGGACCAAAAACTGACTTATACATGTACAGCCTCG
AACCCTGTCAGCAACAATTCTGACTCCGTCACTGTGCAACAGCCATGTACAGACTCTCCCAGCT
TCCATCCTTACCATGGTGTGTTGCCAGGGGGGCTGGCCGCGCTCTCTCTGCTTATGCTCATTCC
AGTGGTGGCACTTCTGTTCCATTTGTACAAGAGAAGGAGAGGTAGGATTGTCCTGGAAGCAGAT
GATGTCTCAAAGAAAATAATATACTCTGCAGTTTCAAGAAATGCCCATCTCACAGAGTCCAGAA
TCTATGATGAAATCCCACAGTCCACGATGCTGTCCCGTACGGAAGAGCCCGTGACCACCATTTA
TTCCTCGGTGCAGCTTTATGAGAAGACGGGGAAAACCAACATGAAGGACGAAAGACCACCCAAG
ACTTTGTGTAATGAAATTGTTGTCTAGGGTCTGTGGAACCATCTGAGGATAGGCCAGAAGGAAC
AGG

hide sequence

RefSeq Acc Id:

XM_017598907 ⟹ XP_017454396

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,859,979 - 86,899,984 (+)	NCBI
mRatBN7.2	13	84,327,580 - 84,361,922 (+)	NCBI
Rnor_6.0	13	90,241,369 - 90,278,392 (+)	NCBI

Sequence:

show sequence

AAAAGCCTATCAGACCCAGTCAGGCACAGCTGTGGCAGGCAAATTCAACTCTTCTGCCTGGGCC
CTGACCTAAACTGCTTAATATGGCCCCACCAAGTCCATAAGGATGGGGAAATGTGTGGAAACCT
CATAGGGTGCCACAGGAGAAGGAAACCAGACAGCTGAGGAAGGGATACATCTTCACTTTGTATT
GGAGCTTGCTAGCATTTTCCCTTAGCTGCTAACTCTCGAGATCAACTGGTGACACAAGTGAACT
GCTGCAGAGTTTTGGAGAACCTGTTCACCCTTTGTTTAAAGCCTCCGGAAACATCAAACTGAAG
TGAAAGCAGCTACTAGACCAGTTCTTTTTCTCCACAAGACGGGAGTCTGACTGGAGATGGCCCA
GCACCATCTATGGATCTGGCTCCTTTGCCTGCAAACCTGGTCTGAAGCAATAGAAAGAGAGCCA
GACTGTTCGATGGTGCTAAATGGGATTCTTGGGGAGTCAGTTACTCTCCCCGTAGATATTAAAG
ATGGCCAGAAAATTAATAACATTGCCTGGACTTCTAAATCATCTGTTGCTTTTGTAACACCAAA
AGTCGGAGGACATGAACTTACCGTAACCCAGGACATTTATAAAGGACGACTAGAAGTCACAAAT
CAGACCTATAACCTGATCATTAGAAACCTGAGGATGAAAGATGCAGGTACTTACAAAGCAGACA
TCAATGAAAAGAACCGTGAGAAAACCATCACCAAGATCTACTGCCTTCAAATCTACTCTCGGCT
GGCAAAACCAAAAATTACAAAGAGTTCAATAACATCTTTGAACAATACCTGTAATATCACACTG
ACATGCTCTGTGGAGGAAGAAGAAAAGAATGTGGTGTATAGTTGGAGTCCCTCTGGAGAGGAAA
GCAATGTCCTTCAAATCTTCCACTCCCCTATGGACCAAAAACTGACTTATACATGTACAGCCTC
GAACCCTGTCAGCAACAATTCTGACTCCGTCACTGTGCAACAGCCATGTACAGACTCTCCCAGC
TTCCATCCTTACCATGGTGTGTTGCCAGGGGGGCTGGCCGCGCTCTCTCTGCTTATGCTCATTC
CAGTGGTGGCACTTCTGTTCCATTTGTACAAGAGAAGGAGAGGTAGGATTGTCCTGGAAGCAGA
TGATGTCTCAAAGAAAATAATATACTCTGCAGTTTCAAGAAATGCCCATCTCACAGAGTCCAGA
ATCTATGATGAAATCCCACAGTCCACGATGCTGTCCCGTACGGAAGAGCCCGTGACCACCATTT
ATTCCTCGGTGCAGCTTTATGAGAAGACGGGGAAAACCAACATGAAGGACGAAAGACCACCCAA
GACTTTGTGTAATGAAATTGTTGTCTAGGCTTGTGGACACTTTCCCTAACTCGTCAAATCCTTC
CTATGAGAACAATAAGACACACTCCCTGAAATGGCACCTCACAAACTCTTTCACTTCGCCGGGC
ATATAAAAATTGATTTTTTTGGCACAAAGGATGAAATCATCCATGTCTCTAGAAGACTGAATAT
GGATGGAAGATTCTCCTGTCAATATGTAACATCACTGTCCAACAGCTGTGGGAAGAAATCAGTC
AATATTGTGAATACCTGTAACACACCACGGCATACCAGCTGGATCTTCTATGCAGAGTCAACCT
GTGTAAGGAGCCCTGAGGCAAGGCCTCCACCAGTCGCTACAATGCCTTAAGTAATTTAGGAATG
GCATCTTTAAGGTATATGTTATCCCTTACTTGAAAGCATGGCATAGCCAACCTAGTGTAGGCTA
CACATTCATTCCTCCACTCAAGAACCATCGTGCAGATCCCACTAAAATCAGGGACTAGACAAGG
CTGCCCACTCTCTCCCTACTTATTCAATATAGTTCTTGAAGTTCT

hide sequence

RefSeq Acc Id:

XM_039091002 ⟹ XP_038946930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,859,986 - 86,891,959 (+)	NCBI
mRatBN7.2	13	84,327,587 - 84,359,571 (+)	NCBI

RefSeq Acc Id:

XM_039091003 ⟹ XP_038946931

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,859,986 - 86,891,898 (+)	NCBI
mRatBN7.2	13	84,327,587 - 84,359,502 (+)	NCBI

RefSeq Acc Id:

XM_039091004 ⟹ XP_038946932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,879,467 - 86,899,984 (+)	NCBI
mRatBN7.2	13	84,347,070 - 84,361,922 (+)	NCBI

RefSeq Acc Id:

XM_039091006 ⟹ XP_038946934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,879,467 - 86,899,984 (+)	NCBI
mRatBN7.2	13	84,347,070 - 84,361,922 (+)	NCBI

RefSeq Acc Id:

XM_063272555 ⟹ XP_063128625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,859,990 - 86,899,984 (+)	NCBI

RefSeq Acc Id:

XM_063272556 ⟹ XP_063128626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,859,988 - 86,899,984 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001399827	(Get FASTA)	NCBI Sequence Viewer
	NP_001399828	(Get FASTA)	NCBI Sequence Viewer
	NP_001399829	(Get FASTA)	NCBI Sequence Viewer
	NP_001399830	(Get FASTA)	NCBI Sequence Viewer
	XP_008767979	(Get FASTA)	NCBI Sequence Viewer
	XP_017454395	(Get FASTA)	NCBI Sequence Viewer
	XP_017454396	(Get FASTA)	NCBI Sequence Viewer
	XP_038946930	(Get FASTA)	NCBI Sequence Viewer
	XP_038946931	(Get FASTA)	NCBI Sequence Viewer
	XP_038946932	(Get FASTA)	NCBI Sequence Viewer
	XP_038946934	(Get FASTA)	NCBI Sequence Viewer
	XP_063128625	(Get FASTA)	NCBI Sequence Viewer
	XP_063128626	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94665	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072708
	ENSRNOP00000072708.2
	ENSRNOP00000085386.1

RefSeq Acc Id:	XP_008767979 ⟸ XM_008769757
- Peptide Label:	isoform X3
- UniProtKB:	F1M0B5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVLNGILGESVTLPVDIKDGQKINNIAWTSKSSVAFVTPKVGGHELTVTQDIYKGRLEVTNQTY NLIIRNLRMKDAGTYKADINEKNREKTITKIYCLQIYSRLAKPKITKSSITSLNNTCNITLTCS VEEEEKNVVYSWSPSGEESNVLQIFHSPMDQKLTYTCTASNPVSNNSDSVTVQQPCTDSPSFHP YHGVLPGGLAALSLLMLIPVVALLFHLYKRRRGRIVLEADDVSKKIIYSAVSRNAHLTESRIYD EIPQSTMLSRTEEPVTTIYSSVQLYEKTGKTNMKDERPPKTLCNEIVV hide sequence

RefSeq Acc Id:	XP_017454396 ⟸ XM_017598907
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K3N2 (UniProtKB/TrEMBL), A6JG09 (UniProtKB/TrEMBL), F1M0B5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQHHLWIWLLCLQTWSEAIEREPDCSMVLNGILGESVTLPVDIKDGQKINNIAWTSKSSVAFV TPKVGGHELTVTQDIYKGRLEVTNQTYNLIIRNLRMKDAGTYKADINEKNREKTITKIYCLQIY SRLAKPKITKSSITSLNNTCNITLTCSVEEEEKNVVYSWSPSGEESNVLQIFHSPMDQKLTYTC TASNPVSNNSDSVTVQQPCTDSPSFHPYHGVLPGGLAALSLLMLIPVVALLFHLYKRRRGRIVL EADDVSKKIIYSAVSRNAHLTESRIYDEIPQSTMLSRTEEPVTTIYSSVQLYEKTGKTNMKDER PPKTLCNEIVV hide sequence

RefSeq Acc Id:	XP_017454395 ⟸ XM_017598906
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K3N2 (UniProtKB/TrEMBL), A6JG09 (UniProtKB/TrEMBL), F1M0B5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQHHLWIWLLCLQTWSEAIEREPDCSMVLNGILGESVTLPVDIKDGQKINNIAWTSKSSVAFV TPKVGGHELTVTQDIYKGRLEVTNQTYNLIIRNLRMKDAGTYKADINEKNREKTITKIYCLQIY SRLAKPKITKSSITSLNNTCNITLTCSVEEEEKNVVYSWSPSGEESNVLQIFHSPMDQKLTYTC TASNPVSNNSDSVTVQQPCTDSPSFHPYHGVLPGGLAALSLLMLIPVVALLFHLYKRRRGRIVL EADDVSKKIIYSAVSRNAHLTESRIYDEIPQSTMLSRTEEPVTTIYSSVQLYEKTGKTNMKDER PPKTLCNEIVV hide sequence

Ensembl Acc Id:

ENSRNOP00000072708 ⟸ ENSRNOT00000078162

Ensembl Acc Id:

ENSRNOP00000042936 ⟸ ENSRNOT00000050547

RefSeq Acc Id:	XP_038946930 ⟸ XM_039091002
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038946931 ⟸ XM_039091003
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038946932 ⟸ XM_039091004
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038946934 ⟸ XM_039091006
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000085386 ⟸ ENSRNOT00000114683

RefSeq Acc Id:	NP_001399829 ⟸ NM_001412900
- Peptide Label:	isoform 1 precursor
- UniProtKB:	A0A0G2K3N2 (UniProtKB/TrEMBL), A6JG09 (UniProtKB/TrEMBL), F1M0B5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001399830 ⟸ NM_001412901
- Peptide Label:	isoform 2 precursor
- UniProtKB:	F1M0B5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001399827 ⟸ NM_001412898
- Peptide Label:	isoform 3 precursor
- UniProtKB:	F1M0B5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001399828 ⟸ NM_001412899
- Peptide Label:	isoform 4 precursor
- UniProtKB:	F1M0B5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128626 ⟸ XM_063272556
- Peptide Label:	isoform X2
- UniProtKB:	F1M0B5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128625 ⟸ XM_063272555
- Peptide Label:	isoform X2
- UniProtKB:	F1M0B5 (UniProtKB/TrEMBL)

Protein Domains

Ig-like Immunoglobulin V-set

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M0B5-F1-model_v2	AlphaFold	F1M0B5	1-334	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699032

Promoter ID:

EPDNEW_R9541

Type:

initiation region

Name:

Cd84_1

Description:

CD84 molecule

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	90,244,723 - 90,244,783	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564553	AgrOrtholog
BioCyc Gene	G2FUF-17338	BioCyc
Ensembl Genes	ENSRNOG00000022884	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000078162	ENTREZGENE
	ENSRNOT00000078162.3	UniProtKB/TrEMBL
	ENSRNOT00000114683.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	CD2/SLAM_rcpt	UniProtKB/TrEMBL
	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
NCBI Gene	501872	ENTREZGENE
PANTHER	SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE	UniProtKB/TrEMBL
	SLAM FAMILY MEMBER 5	UniProtKB/TrEMBL
Pfam	V-set	UniProtKB/TrEMBL
PhenoGen	Cd84	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000022884	RatGTEx
SMART	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A0G2K3N2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A3Y1_RAT	UniProtKB/TrEMBL
	A6JG09	ENTREZGENE, UniProtKB/TrEMBL
	F1M0B5	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-26	Cd84	CD84 molecule	Cd84	CD84 antigen	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Cd84	CD84 antigen	RGD1564553_predicted	similar to CD84 leukocyte antigen (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564553_predicted	similar to CD84 leukocyte antigen (predicted)	LOC501872	similar to CD84 leukocyte antigen	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC501872	similar to CD84 leukocyte antigen			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD