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Gene: Btaf1 (B-TFIID TATA-box binding protein associated factor 1) Rattus norvegicus

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Symbol:

Btaf1

Name:

B-TFIID TATA-box binding protein associated factor 1

RGD ID:

1564130

Description:

Predicted to enable ATP-dependent activity, acting on DNA and transcription coregulator activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human BTAF1 (B-TFIID TATA-box binding protein associated factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae); BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa; LOC368042; RGD1564130; similar to TBP-associated factor 172 (TAF-172) (TAF(II)170); TATA-binding protein-associated factor 172

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	244,065,728 - 244,156,457 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	244,065,743 - 244,156,457 (+)	Ensembl				GRCr8
mRatBN7.2	1	234,653,219 - 234,743,903 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	234,653,156 - 234,743,903 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	243,057,912 - 243,133,573 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	249,985,875 - 250,061,333 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	242,824,083 - 242,899,534 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	255,564,247 - 255,654,932 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	255,564,409 - 255,654,932 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	263,040,091 - 263,130,789 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	241,212,431 - 241,287,889 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	231,760,769 - 231,836,199 (+)	NCBI		Celera
Cytogenetic Map	1	q53	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dioxygen (ISO)

diuron (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

fluoranthene (ISO)

flutamide (EXP)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methamphetamine (EXP)

N-nitrosodiethylamine (EXP)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

rotenone (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulforaphane (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

Triptolide (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of DNA-templated transcription (IEA,ISO)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IEA)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

ATP-dependent activity, acting on DNA (IEA,ISO)

DNA binding (IEA)

helicase activity (IEA)

hydrolase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

TBP-class protein binding (IEA)

transcription coregulator activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9488487	PMID:12477932	PMID:15632090	PMID:23361013

Genomics

Comparative Map Data

Btaf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	244,065,728 - 244,156,457 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	244,065,743 - 244,156,457 (+)	Ensembl				GRCr8
mRatBN7.2	1	234,653,219 - 234,743,903 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	234,653,156 - 234,743,903 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	243,057,912 - 243,133,573 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	249,985,875 - 250,061,333 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	242,824,083 - 242,899,534 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	255,564,247 - 255,654,932 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	255,564,409 - 255,654,932 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	263,040,091 - 263,130,789 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	241,212,431 - 241,287,889 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	231,760,769 - 231,836,199 (+)	NCBI		Celera
Cytogenetic Map	1	q53	NCBI

BTAF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	91,923,770 - 92,031,437 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	91,923,770 - 92,031,437 (+)	Ensembl			hg38	GRCh38
GRCh37	10	93,683,527 - 93,791,194 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	93,673,716 - 93,780,062 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	93,673,715 - 93,780,058	NCBI
Celera	10	87,427,411 - 87,534,594 (+)	NCBI		Celera
Cytogenetic Map	10	q23.32	NCBI
HuRef	10	87,312,494 - 87,418,817 (+)	NCBI		HuRef
CHM1_1	10	93,965,490 - 94,071,828 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	92,805,881 - 92,913,817 (+)	NCBI		T2T-CHM13v2.0

Btaf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	36,903,479 - 36,991,457 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	36,903,479 - 36,990,152 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	36,926,079 - 37,014,057 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	36,926,079 - 37,012,752 (+)	Ensembl			mm10	GRCm38
MGSCv37	19	37,000,569 - 37,088,547 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	36,991,223 - 37,079,201 (+)	NCBI		MGSCv36	mm8
Celera	19	37,701,431 - 37,790,204 (+)	NCBI		Celera
Cytogenetic Map	19	C2	NCBI
cM Map	19	32.02	NCBI

Btaf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	1,241,792 - 1,337,918 (-)	Ensembl
ChiLan1.0	NW_004955425	1,239,640 - 1,350,327 (-)	NCBI	ChiLan1.0	ChiLan1.0

BTAF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	103,960,535 - 104,068,616 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	103,965,850 - 104,074,608 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	88,671,438 - 88,778,452 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	92,193,094 - 92,298,865 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	92,193,094 - 92,298,865 (+)	Ensembl			panPan2	panpan1.1

BTAF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	6,415,399 - 6,510,715 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	6,415,513 - 6,521,723 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	6,591,413 - 6,686,691 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	6,669,523 - 6,764,934 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	6,669,352 - 6,764,932 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	6,395,736 - 6,490,834 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	6,429,022 - 6,524,489 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	6,593,877 - 6,689,184 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Btaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	40,995,303 - 41,088,484 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936601	2,627,900 - 2,721,146 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936601	2,629,248 - 2,721,082 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BTAF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	103,530,787 - 103,642,266 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	103,530,746 - 103,641,082 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	113,043,937 - 113,154,260 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BTAF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	85,199,462 - 85,306,352 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	85,236,067 - 85,306,935 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	45,930,020 - 46,036,676 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Btaf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	3,215,679 - 3,330,623 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624737	3,215,644 - 3,331,894 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Btaf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	36,808,989 - 36,894,926 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Btaf1
587 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	359
Count of miRNA genes:	203
Interacting mature miRNAs:	259
Transcripts:	ENSRNOT00000024465
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	207243873	252243873	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
61455	Niddm7	Non-insulin dependent diabetes mellitus QTL 7	5.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	223964326	248681945	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	237995023	269633915	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	207243873	252243873	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2314011	Gluco56	Glucose level QTL 56			blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	209203273	254203273	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	202543537	247543537	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	8e-07	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	205674651	250674651	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	207243873	252243873	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
2316896	Gluco57	Glucose level QTL 57	7.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	238398865	255849249	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	208798288	253798288	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228180243	255849249	Rat
61403	Niddm4	Non-insulin dependent diabetes mellitus QTL 4			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	201464383	246464383	Rat
1641926	Teswt2	Testicular weight QTL 2	2.82		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	1	203675682	248675682	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	205674651	250674651	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	207099883	252099883	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	241569529	269633915	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	243953669	270518180	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Markers in Region

RH127376

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	234,741,923 - 234,742,126 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	255,652,953 - 255,653,155	NCBI	Rnor6.0
Rnor_5.0	1	263,128,810 - 263,129,012	UniSTS	Rnor5.0
RGSC_v3.4	1	241,285,910 - 241,286,112	UniSTS	RGSC3.4
Celera	1	231,834,220 - 231,834,422	UniSTS
RH 3.4 Map	1	1583.0	UniSTS
Cytogenetic Map	1	q53	UniSTS

BE116339

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	234,683,370 - 234,683,529 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	255,594,384 - 255,594,542	NCBI	Rnor6.0
Rnor_5.0	1	263,070,242 - 263,070,400	UniSTS	Rnor5.0
RGSC_v3.4	1	241,227,341 - 241,227,499	UniSTS	RGSC3.4
Celera	1	231,775,679 - 231,775,837	UniSTS
RH 3.4 Map	1	1579.6	UniSTS
Cytogenetic Map	1	q53	UniSTS

UniSTS:237929

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	234,741,355 - 234,741,596 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	255,652,385 - 255,652,625	NCBI	Rnor6.0
Rnor_5.0	1	263,128,242 - 263,128,482	UniSTS	Rnor5.0
RGSC_v3.4	1	241,285,342 - 241,285,582	UniSTS	RGSC3.4
Celera	1	231,833,652 - 231,833,892	UniSTS
Cytogenetic Map	1	q53	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC096310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024465 ⟹ ENSRNOP00000024465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	244,080,993 - 244,156,457 (+)	Ensembl
mRatBN7.2 Ensembl	1	234,668,452 - 234,743,903 (+)	Ensembl
Rnor_6.0 Ensembl	1	255,579,474 - 255,654,932 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081786 ⟹ ENSRNOP00000071913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	244,083,628 - 244,156,457 (+)	Ensembl
mRatBN7.2 Ensembl	1	234,670,456 - 234,743,903 (+)	Ensembl
Rnor_6.0 Ensembl	1	255,564,409 - 255,654,531 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095159 ⟹ ENSRNOP00000095886

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	234,676,682 - 234,743,903 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111452 ⟹ ENSRNOP00000086478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	234,653,156 - 234,743,903 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113933 ⟹ ENSRNOP00000080583

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	244,065,743 - 244,154,077 (+)	Ensembl
mRatBN7.2 Ensembl	1	234,653,156 - 234,743,903 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118235 ⟹ ENSRNOP00000091184

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	244,083,605 - 244,156,457 (+)	Ensembl
mRatBN7.2 Ensembl	1	234,671,064 - 234,743,903 (+)	Ensembl

RefSeq Acc Id:

NM_001191917 ⟹ NP_001178846

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	244,080,993 - 244,156,457 (+)	NCBI
mRatBN7.2	1	234,668,452 - 234,743,903 (+)	NCBI
Rnor_6.0	1	255,579,474 - 255,654,932 (+)	NCBI
Rnor_5.0	1	263,040,091 - 263,130,789 (+)	NCBI
Celera	1	231,760,769 - 231,836,199 (+)	NCBI

Sequence:

show sequence

ATGGGCTACCAGGCCTGTCCTGTTTTCCTCTTAATACTCGATCGTCTTTTTATCTTACTGGATA
CGGGTACTACCCCAGTTACAAGAAAAGCCGCTGCACAGCAACTTGGAGAAGTGGTGAAACTTCA
TCCTCATGAATTAAATAATTTGTTATCTAAGGTATTAATATATTTAAGGAGTGCAAATTGGGAT
ACTCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAG
TGCCAAGAACCAAACAAGAACCCACAGAGTGTTCTATGGAAGATTCATCTACTACAGATCGATT
AAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCT
GGTGCAGAATTTGAAGTTCAAGATGAAAAATCAGGTGAAGTGGATCCTAAAGAGAGGATAGCAC
GCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGAGAAGCAATTGGAATGAGTAC
TGAAGAACTCTTCAACGATGAAGACTTGGATTATACTCCAACTTCAGCAGCCCTTGTAAACAAA
CAATCTACTCTCCAAGCAGCTGAATTGATTGATTCAGAATTCCGAGCAGGAATGAGTAATAGAC
AGAAGAACAAAGCTAAAAGAATGGCCAAGCTATTTGCAAAACAGAGATCCAGGGATGCAGTGGA
AACAAATGAGAAGAGCAATGACAGCACTGATGGAGAGCCGGAAGAAAAGAGACGGAAAGTAGCA
AATGTCGTTATCAATCAGACTGCGAGTGATGCCAAAGTCTTGATAGATAATGTTCCAGAAAGTT
CTTCCTTCATTGAAGAGACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGA
CCTTTTTAATCCTTCCTGGGAGGTTCGACATGGGGCGGGTACTGGACTCAGAGAAATTCTTAAA
GCTCATGGGAAAAGTGGTGGTAAAATGGGAGACAGCACTTTAGAAGAGATGATTCAGCAGCATC
AAGAGTGGTTGGAAGACTTGGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGA
CTTTGTTTCTGATGAAGTTGTAGCTCCAGTTCGTGAAACTTGTGCTCAAACATTAGGTGTCGTT
TTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACAC
AAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCA
GGACGTGATTAATACTTTATTGCCTAAAGTTTTAACTCGAATAATCGAAGGACTCCAGGACCTT
GATGACGATGTTAGAGCTGTTGCTGCAGCATCCTTAGTTCCTGTAGTAGAAAGCCTTGTCTACC
TTCAGACTCAAAAGGTGCCCTCCATTATAAATACCTTATGGGATTCTCTTCTGGAATTAGATGA
TCTAACAGCTTCAACCAATAGTATTATGACTCTCCTTTCATCCATGTTAACTTACCCTCAGGTC
CAGCAATGCAGTATTCAGCAGTCACTCACAGTTTTAGTCCCACGGGTCTGGCCATTTTTACATC
ACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGA
CCAGAACTCGTCGTCTTGGCTTATCCCTATCCTGTCTGATATGCTGCGGCACATCTTTCAGTTC
TGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTCATTCACAAGGTCTGGATGGAACTGTTGA
GCAAGGCTTCAGTTCAGTATGTGGTAGCAGCTGCTTGCCCGTGGATGGGTGCTTGGCTTTGCTT
AATGATGCAGCCTTCTCATTTACCTATTGATTTAAATATGCTGCTCGAAGTAAAAGCCAGAACC
AAGGAAAAAACAGGTGGTAAGGTCCGGCAAGGTCAGATGCAGAGTAAAGAGGTGCTTCAGGAGT
ACATCGCGGGGGCAGACACCATCATGGAGGACCCAGCTACCAGGGACTTTGTAGTTATGAGGGC
CAGGATGATGGCAGCTAAGTTGTTAGGAGCACTCTGTTGCTGTATTTGTGATCCAGGTGTAAAT
ATGGTAAACCAAGAAATTAAACCAGCAGAATCCCTCGGCCAGTTGCTACTCTTCCATTTGAATT
CCAAATCTGCTTTACAGAGAATTAGTGCTGCGTTAGTAATCTGTGAATGGGCTGCTTTGCAAAA
GGAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTG
TATTATGATGAAATTGCTGTTCCGTTCACACGAATGCAGAATGAATGTAAACAGTTTATATCGT
CATTAGCTGACGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCA
AGCTAACGACCTGGTAACTACTCTTTTTAATGAAGTCACGTCAACTTTTGATTTAAATCCTCAA
GTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGG
AGTGGCAAGTGTTGCAGCTGAGAGTGCATACGTTTGCTGCATGTGCAGTTGTGAGCTTGCAGCA
GCTTCCGGAGAAACTAAATCCTATCATAAAACCACTTATGGAAACAATTAAAAAAGAAGAGAAT
ACGCTAGTACAAAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGA
CACCATGTCCTAATTCAAAAGTTATTAAAAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCT
CACTCCCTGTGTAACATGTCCAGTGCCAACACAAAGTGGCCAGGAAAACTCTAAAGGATCCAAC
TCAGAAAAAGACGGAATGCACCATACTGTCACCAAGCACAGAGGCATCATTACGCTCTACAGGC
ATCAGAAAGCAGCTTTTGCCATTACAAGCAGGAGAGGCCCTATCCCCAAAGCAATCAAAGCTCA
GATAGCAGATCTACCTGCAGGAAGTAGTGGGAATATCCTGGTTGAACTTGACGAGGGTCAAAAG
CCTTACCTGGTACAACGGAGAGGAGCCGAATTTGCCCTAACAACTGTAGTGAAGCATTTTGGTG
CTGAAATGGCACTGAAATTGCCGCATCTTTGGGACGCGATGGTTGGTCCACTGAAGACGATGAT
TGACCTAAATAACTTTGATGGAAAGTCCCTCCTGGAAAGAGGTGATGCTCCTGCTCAAGAACTG
GTGAATTCCCTGCAAGTGTTTGAAACAGCAGCAGCTTCGATGGACTCTGAACTTCACCCCTTGC
TGGTGCAGCACCTGCCTCATCTTTACATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCATAT
GGCAGCTCGCTGCGTAGGCGTCATGAGTAAGATAGCTACCATGGAGACCATGAATATTTTTTTG
GAGAAGGTACTTCCCTGGCTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAG
CACTTGCCTGTGTTATGGAACAATTGGATGTTGGCATTGTCCCATACATTGTCCTTTTAGTTGT
TCCTGTGTTGGGAAGAATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTT
GCAACACTGATTAGACTGATGCCACTCGAGGCAGGCATTCCGGACCCTCCAAACATGTCAGAAG
AATTAATCCAGTTGAAGGCAAAAGAGCGACACTTTTTAGAGCAGTTGTTAGATGGGAAGAAGCT
AGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAGCTTAGGAAGTACCAGCAGGATGGTGTG
AACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGGATTCTATGTGACGACATGGGCTTAG
GGAAAACACTGCAGTCCATCTGCATCCTAGCCGGCGACCATTGTCAGAGGGCCCAGGAATATGC
AAGATCGAAACTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGCCCACCGACATTAACA
GGCCATTGGGTGGATGAAGTAGGTAAATTCTGCTCCAGAGAATATCTCAACCCATTGCATTATA
CTGGCCCTCCCACTGAAAGGATAAGGTTGCAACATCAAGTAAAAAGGCATAATCTGATAGTAGC
CTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAGGAATATTAAATTTAACTACTGTATT
CTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAATTGTCAAAAGCAGTAAAACAACTGA
CTGCTAACTATAGGATTATTCTTTCTGGAACACCAATCCAGAACAATGTTTTGGAGTTGTGGTC
ATTATTTGATTTCCTTATGCCTGGATTTTTGGGTACTGAACGCCAGTTTGCTGCTCGATATGGC
AAACCTATATTAGCGAGTAGGGATGCACGAAGCTCCAGTCGAGAGCAAGAAGCAGGTGTTCTTG
CCATGGATGCACTGCACCGCCAAGTTCTGCCATTCCTTCTCAGAAGAATGAAAGAAGATGTTTT
GCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTTAGCCCTCTCCAGGTTCAG
CTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACTGTGTCTTCTGCTG
CACTCTCAGAAGAAACTGAAAAACCAAAGCTGAAAGCTACAGGTCACGTGTTCCAGGCTTTGCA
ATATTTACGTAAACTCTGCAACCATCCGGCATTGGTCTTAACACCTCAGCATCCAGAATTCAAG
AATACTACTGAAAAGCTGGCAGTTCAGAATTCTTCCCTTCATGATATCCAACACGCCCCTAAGC
TCTCAGCCCTGAAACAATTGCTGTTGGACTGTGGCTTGGGAAATGGCACTTCTTCGGAGAGCGG
CACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTCGAT
ATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTGGATGGCA
GCATACCTCCTGGACAGAGGCACTCCATTGTGTCCCGGTTTAACAATGACCCATCCATTGATGT
TCTTCTACTCACAACTCATGTTGGTGGCCTAGGGCTTAACCTGACTGGTGCTGACACTGTGGTG
TTTGTGGAGCATGACTGGAACCCTATGCGAGATTTACAGGCCATGGACCGGGCCCATCGTATTG
GGCAGAAACGTGTGGTTAATGTCTACCGGTTGATAACAAGAGGAACACTAGAAGAAAAGATCAT
GGGCTTGCAGAAATTCAAGATGAACATTGCAAATACCGTTATTAGCCAAGAAAATTCCAGCTTA
CAGAGTATGGGGACTGACCAGCTTCTCGACCTGTTTACTCTAGACAAGGATGGAAAGGCAGAAA
AGGCTGACAGCTCCACCTCTGGAAAAGCGAGCATGAAATCAGTTCTTGAAAACCTGAGTGACCT
CTGGGACGCCGAGCAGTATGATTCCGAGTACAACCTGGAGACCTTCATGCGCTCTCTCGAGTGA
CTGCTGCATGCTGGGGCGGCGGCTGCCAGCTCAGTTCCTTCTGCTGACCTCAGCAGACCTCAGT
CTCTGGCGAACTTGACTGAGTTATAAATAGATCTGGAGAACACGCAGCTTAGTGCTGCCTCTTG
CTTCATTGGGGAACAAGTTACTCTCAAGTATTTGCACTGTATTAACTATGACATGTTAATGTGA
AAGGTTTAAATTTACACGACGACTAGCTGCAGACAAAGGGAGCGGCCAGGTCTCCATGTGCTAC
CAGGAGGTGCTTCTGCAGGGACAGCCTCTACAGTCACTTTCTCCACGGTGAGATCACCAGTACT
GTGGCGTTTGTATGCATTCGTGTTCTTTAAAATAGTACTTGTTTTTATAATTGATTACACGTAG
GGCTTCTTTTGTATAAAAGCCTTAATGAGCCATACTTTTCAGAATTTCTGAGTGACTTTAATAT
TAGCCCTATGACATGAAATGTTAAGCAATGAATTGAACAAGGCCCTGTGGCAACCTTTGTATAT
TTAATGCAGATGCATATAGTGTTTTTCAAATCCTTTAACATCATTTATTCACTTTGAAAGTCTA
CTAAACAATAAATGCAGGTACTGGTATATTTAAGGCTACCATTAACATCCTATTAGAGGGTGGG
TTTCTGTTTAATTTATCTAATGGCTAGGACATAGCCTGATTCAAAGAACATATATGTATTCAGT
ATGTTTCAATCATATATATATATATATAAATATATATATATTTTGTAACTAGGAACACACACAG
TTTTCCAGACATAGATTTTACATTGCTTAAAATCCTGAACCCCGTGGTAAAGGCAGTTTACTGT
GGTAGGGCATGCCTGACACATGGGAGCAATGCTCTTCATACACGGCATACAAGGATACACGTGT
CTATATGACAGTGACCATCCCACACCAGAGAATGTGTCTGGCTTTGGCACTAAATCATGTAGTT
ATACCAGACAGCAATAATCGAGCACGGAGCTAACGAGCTACTTCAGCAGCTCACTGGTGAGGGT
GGGGAGCTGTATATAGATATGCATGTATGTGTATGTATATATAATTTTATAAATTCCCCACGTA
AATTAATACATGCCCATGTATACACACATTTGTGGAATATATTTGTATATATGTATGTACAGGT
AAGAAACATCCCTAAGGTTGTGTCTGGCCCTGCACCCAGGCATCAACTTAAAACCATCAGACCT
CAGTTGTACAAGAGCAAGGTTTGTTTAATAACTCGGAGCTCCGCAGCACCCAGATGTGAAGTCT
GTCTGTCACACTCGGGTAGCCTTGACAACCATCCTGTAATGCTGAACCTAGCATTCCAAAAGAA
TAAACATCAAGTTGTACCGTGTGTGCGGTGTGTGTTGTTTACAGGGAGACGCACAGGCTGCTGG
AGCCACACTTTGTATGCAAGGTTTGTATTCAAATAGAGGACCAAAAGGAAAACTCCATGTAGAT
TCCATGTAGAAGATAGAGTGCACCTGAATGCTGTTATACACTGTTCGTTTGCTACTTCCATATC
TAAAAGCAGGGAGAAGTTTTATCGTTGAAATAGGAAGGGCAGAAGCATTCAGGCCATATATTAG
TGTTTTGTTTTTCCTCCTCACTTGAAAAGTCACAACAGGAAGCCAGGTAAAGTTCCTGGGTTTC
ATCAGAAAGTACATGTGCATACTGGCAAACAATTTCTCAAGATAAAGCATCTTGTCCTTTTTGT
GAGGAACAGTGACATTTTAAAAACCTTTTATTGTAAAATGTAAAGCCACACATTTTCGTTTCCC
AACAAAGGCACATGACCCAGAGTATGGTACGTGTCCGTCCGACAGTGGGGAACACTACTGAGGA
AGGGCATGTGTTAAACCCGTTACCAGCTGTGTGGGGTGACTATGTACTAGTTATGTGTTTAAAA
TGTGTGGGTTTTGGAGCTCAAATATACACGGTAGTGTTGGTGCTGAACTGGATTGTGGGTTCAT
GGAATCCATTGTACTACTGTTGAAATTTTCAAATTGTTAATTACATTTAGGGTTGATCAAACAT
TGTTTCTTGTAGGAAAGCCTAAGATTCAAGGTTCTGGGTCAAATTTATACACACCACTCACAAA
TCCTAGTCTTGGAGGAGAGCTGGTTACTTGGTCCTCTATTGAGATGGTTTATAGAGGTTTGGGC
AAATGTTAGTATCCAGGGGTGCCATCTGAAGGTGTGACAGTGTGGCATCATGCCCCTTGAATGT
ACTTGATCTCAGAACTCAGCCGGGTCAGGCACCTTAGTCCTTGCAGAGAGCATGACCATTTAAG
TGACAAAACTGCAGCTACGAACACAATAGAGCTAGGCACGGTGGCACACGACGTTAATCCCAGC
ACTCAGGAGGTAGACGTAGATGGATTTTTTTTTTTTCTTCTTTTTTTTCGGAGCTGGGGACCGA
ACCCAGGGCTTTGCGCTTGCTAGGCAAGCGCTCTCCCACTGAGCTAAATCCCCAACCCCTGATG
GATCTCTTGAGTTCGAGGCCAGCCTGGGCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACA
GAGAAACCTTGTCTCAAAACGATAACAAACCAACGAAATAGAATTTGCAGGGAAGAACAATGTC
TATGTTGAGTTTTGCCCACTAACCTGGCCTTGTATCTTCTTCAGACCTCAACTTCCCAGGACCC
GATGGTACTGGGGGGATTAAGTGACATTATAAATGCAGGGGTGTCTGTAATCAAATGTCAAAAA
AATTCAGTGTGAATCAATACAATAAAAACTTGAGTTTTGCTACCAA

hide sequence

RefSeq Acc Id:

XM_006231332 ⟹ XP_006231394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	244,065,728 - 244,155,024 (+)	NCBI
mRatBN7.2	1	234,653,219 - 234,743,903 (+)	NCBI
Rnor_6.0	1	255,564,247 - 255,654,932 (+)	NCBI
Rnor_5.0	1	263,040,091 - 263,130,789 (+)	NCBI

Sequence:

show sequence

GAGCGGGGCTGGGGGCACCCGGTTTGAAGTGGTGCGGGTCAGAACGGCGCCGCCTCCGCCCGTG
TGTGGGACCCTGGTGGCGACAGAGACGAGCTCCGGTGGCCGGCCCATGTCCGAAGGCCTGTGCC
GGCCGCTACACGCCGCGCCGCCTCCTGCCCTGCGCCCGGCGGCCTGGGCCTGCGCCGCTCTGCT
CGGGAAACGAGCGCTGGAGCGGCGTGGCGTGTAGGTCCCCGGGAGTTCCGAACCGCCGGCGCCG
GCCATGGCGGTCTCCAGACTCGATCGTCTTTTTATCTTACTGGATACGGGTACTACCCCAGTTA
CAAGAAAAGCCGCTGCACAGCAACTTGGAGAAGTGGTGAAACTTCATCCTCATGAATTAAATAA
TTTGTTATCTAAGGTATTAATATATTTAAGGAGTGCAAATTGGGATACTCGGATTGCAGCAGGA
CAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG
AACCCACAGAGTGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGA
TATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTT
CAAGATGAAAAATCAGGTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTAC
AGAAGAAACTTGGACTTAATATGGGAGAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGA
TGAAGACTTGGATTATACTCCAACTTCAGCAGCCCTTGTAAACAAACAATCTACTCTCCAAGCA
GCTGAATTGATTGATTCAGAATTCCGAGCAGGAATGAGTAATAGACAGAAGAACAAAGCTAAAA
GAATGGCCAAGCTATTTGCAAAACAGAGATCCAGGGATGCAGTGGAAACAAATGAGAAGAGCAA
TGACAGCACTGATGGAGAGCCGGAAGAAAAGAGACGGAAAGTAGCAAATGTCGTTATCAATCAG
ACTGCGAGTGATGCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTCATTGAAGAGA
CAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCTTCCTG
GGAGGTTCGACATGGGGCGGGTACTGGACTCAGAGAAATTCTTAAAGCTCATGGGAAAAGTGGT
GGTAAAATGGGAGACAGCACTTTAGAAGAGATGATTCAGCAGCATCAAGAGTGGTTGGAAGACT
TGGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAGT
TGTAGCTCCAGTTCGTGAAACTTGTGCTCAAACATTAGGTGTCGTTTTAAAGCACATGAACGAA
ACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTA
GACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAGGACGTGATTAATACTTT
ATTGCCTAAAGTTTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCT
GTTGCTGCAGCATCCTTAGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACTCAAAAGGTGC
CCTCCATTATAAATACCTTATGGGATTCTCTTCTGGAATTAGATGATCTAACAGCTTCAACCAA
TAGTATTATGACTCTCCTTTCATCCATGTTAACTTACCCTCAGGTCCAGCAATGCAGTATTCAG
CAGTCACTCACAGTTTTAGTCCCACGGGTCTGGCCATTTTTACATCACACTATATCTTCAGTTC
GAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACCAGAACTCGTCGTCTTG
GCTTATCCCTATCCTGTCTGATATGCTGCGGCACATCTTTCAGTTCTGTGTTTTAGAAAGCAGC
CAGGAAATTCTGGATCTCATTCACAAGGTCTGGATGGAACTGTTGAGCAAGGCTTCAGTTCAGT
ATGTGGTAGCAGCTGCTTGCCCGTGGATGGGTGCTTGGCTTTGCTTAATGATGCAGCCTTCTCA
TTTACCTATTGATTTAAATATGCTGCTCGAAGTAAAAGCCAGAACCAAGGAAAAAACAGGTGGT
AAGGTCCGGCAAGGTCAGATGCAGAGTAAAGAGGTGCTTCAGGAGTACATCGCGGGGGCAGACA
CCATCATGGAGGACCCAGCTACCAGGGACTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA
GTTGTTAGGAGCACTCTGTTGCTGTATTTGTGATCCAGGTGTAAATATGGTAAACCAAGAAATT
AAACCAGCAGAATCCCTCGGCCAGTTGCTACTCTTCCATTTGAATTCCAAATCTGCTTTACAGA
GAATTAGTGCTGCGTTAGTAATCTGTGAATGGGCTGCTTTGCAAAAGGAGTGTAAAGCTGTTAC
CCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCT
GTTCCGTTCACACGAATGCAGAATGAATGTAAACAGTTTATATCGTCATTAGCTGACGCACATA
TTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCTAACGACCTGGTAAC
TACTCTTTTTAATGAAGTCACGTCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGAT
AGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTGTTGCAGC
TGAGAGTGCATACGTTTGCTGCATGTGCAGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAA
TCCTATCATAAAACCACTTATGGAAACAATTAAAAAAGAAGAGAATACGCTAGTACAAAACTAT
GCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGTCCTAATTCAA
AAGTTATTAAAAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTAACATG
TCCAGTGCCAACACAAAGTGGCCAGGAAAACTCTAAAGGATCCAACTCAGAAAAAGACGGAATG
CACCATACTGTCACCAAGCACAGAGGCATCATTACGCTCTACAGGCATCAGAAAGCAGCTTTTG
CCATTACAAGCAGGAGAGGCCCTATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGC
AGGAAGTAGTGGGAATATCCTGGTTGAACTTGACGAGGGTCAAAAGCCTTACCTGGTACAACGG
AGAGGAGCCGAATTTGCCCTAACAACTGTAGTGAAGCATTTTGGTGCTGAAATGGCACTGAAAT
TGCCGCATCTTTGGGACGCGATGGTTGGTCCACTGAAGACGATGATTGACCTAAATAACTTTGA
TGGAAAGTCCCTCCTGGAAAGAGGTGATGCTCCTGCTCAAGAACTGGTGAATTCCCTGCAAGTG
TTTGAAACAGCAGCAGCTTCGATGGACTCTGAACTTCACCCCTTGCTGGTGCAGCACCTGCCTC
ATCTTTACATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCATATGGCAGCTCGCTGCGTAGG
CGTCATGAGTAAGATAGCTACCATGGAGACCATGAATATTTTTTTGGAGAAGGTACTTCCCTGG
CTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCTGTGTTATGG
AACAATTGGATGTTGGCATTGTCCCATACATTGTCCTTTTAGTTGTTCCTGTGTTGGGAAGAAT
GAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTG
ATGCCACTCGAGGCAGGCATTCCGGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAGG
CAAAAGAGCGACACTTTTTAGAGCAGTTGTTAGATGGGAAGAAGCTAGAAAATTACAAGATCCC
AGTGCCAATCAATGCTGAGCTTAGGAAGTACCAGCAGGATGGTGTGAACTGGTTAGCCTTTCTC
AATAAGTATAAGCTTCATGGGATTCTATGTGACGACATGGGCTTAGGGAAAACACTGCAGTCCA
TCTGCATCCTAGCCGGCGACCATTGTCAGAGGGCCCAGGAATATGCAAGATCGAAACTGGCAGA
ATGTATGCCACTTCCTTCCTTGGTGGTTTGCCCACCGACATTAACAGGCCATTGGGTGGATGAA
GTAGGTAAATTCTGCTCCAGAGAATATCTCAACCCATTGCATTATACTGGCCCTCCCACTGAAA
GGATAAGGTTGCAACATCAAGTAAAAAGGCATAATCTGATAGTAGCCTCATATGATGTTGTGAG
GAATGACATAGACTTTTTTAGGAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTC
ATAAAAAATGGAAAAACCAAATTGTCAAAAGCAGTAAAACAACTGACTGCTAACTATAGGATTA
TTCTTTCTGGAACACCAATCCAGAACAATGTTTTGGAGTTGTGGTCATTATTTGATTTCCTTAT
GCCTGGATTTTTGGGTACTGAACGCCAGTTTGCTGCTCGATATGGCAAACCTATATTAGCGAGT
AGGGATGCACGAAGCTCCAGTCGAGAGCAAGAAGCAGGTGTTCTTGCCATGGATGCACTGCACC
GCCAAGTTCTGCCATTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAA
AATTATTCAAGACTATTACTGTACTCTTAGCCCTCTCCAGGTTCAGCTTTATGAAGATTTTGCT
AAGTCGCGTGCCAAGTGTGATGTTGATGAGACTGTGTCTTCTGCTGCACTCTCAGAAGAAACTG
AAAAACCAAAGCTGAAAGCTACAGGTCACGTGTTCCAGGCTTTGCAATATTTACGTAAACTCTG
CAACCATCCGGCATTGGTCTTAACACCTCAGCATCCAGAATTCAAGAATACTACTGAAAAGCTG
GCAGTTCAGAATTCTTCCCTTCATGATATCCAACACGCCCCTAAGCTCTCAGCCCTGAAACAAT
TGCTGTTGGACTGTGGCTTGGGAAATGGCACTTCTTCGGAGAGCGGCACAGAGTCTGTTGTGGC
ACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTCGATATAGTAGAACATGATCTG
CTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTGGATGGCAGCATACCTCCTGGACAGA
GGCACTCCATTGTGTCCCGGTTTAACAATGACCCATCCATTGATGTTCTTCTACTCACAACTCA
TGTTGGTGGCCTAGGGCTTAACCTGACTGGTGCTGACACTGTGGTGTTTGTGGAGCATGACTGG
AACCCTATGCGAGATTTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGAAACGTGTGGTTA
ATGTCTACCGGTTGATAACAAGAGGAACACTAGAAGAAAAGATCATGGGCTTGCAGAAATTCAA
GATGAACATTGCAAATACCGTTATTAGCCAAGAAAATTCCAGCTTACAGAGTATGGGGACTGAC
CAGCTTCTCGACCTGTTTACTCTAGACAAGGATGGAAAGGCAGAAAAGGCTGACAGCTCCACCT
CTGGAAAAGCGAGCATGAAATCAGTTCTTGAAAACCTGAGTGACCTCTGGGACGCCGAGCAGTA
TGATTCCGAGTACAACCTGGAGACCTTCATGCGCTCTCTCGAGTGACTGCTGCATGCTGGGGCG
GCGGCTGCCAGCTCAGTTCCTTCTGCTGACCTCAGCAGACCTCAGTCTCTGGCGAACTTGACTG
AGTTATAAATAGATCTGGAGAACACGCAGCTTAGTGCTGCCTCTTGCTTCATTGGGGAACAAGT
TACTCTCAAGTATTTGCACTGTATTAACTATGACATGTTAATGTGAAAGGTTTAAATTTACACG
ACGACTAGCTGCAGACAAAGGGAGCGGCCAGGTCTCCATGTGCTACCAGGAGGTGCTTCTGCAG
GGACAGCCTCTACAGTCACTTTCTCCACGGTGAGATCACCAGTACTGTGGCGTTTGTATGCATT
CGTGTTCTTTAAAATAGTACTTGTTTTTATAATTGATTACACGTAGGGCTTCTTTTGTATAAAA
GCCTTAATGAGCCATACTTTTCAGAATTTCTGAGTGACTTTAATATTAGCCCTATGACATGAAA
TGTTAAGCAATGAATTGAACAAGGCCCTGTGGCAACCTTTGTATATTTAATGCAGATGCATATA
GTGTTTTTCAAATCCTTTAACATCATTTATTCACTTTGAAAGTCTACTAAACAATAAATGCAGG
TACTGGTATATTTAAGGCTACCATTAACATCCTATTAGAGGGTGGGTTTCTGTTTAATTTATCT
AATGGCTAGGACATAGCCTGATTCAAAGAACATATATGTATTCAGTATGTTTCAATCATATATA
TATATATATAAATATATATATATTTTGTAACTAGGAACACACACAGTTTTCCAGACATAGATTT
TACATTGCTTAAAATCCTGAACCCCGTGGTAAAGGCAGTTTACTGTGGTAGGGCATGCCTGACA
CATGGGAGCAATGCTCTTCATACACGGCATACAAGGATACACGTGTCTATATGACAGTGACCAT
CCCACACCAGAGAATGTGTCTGGCTTTGGCACTAAATCATGTAGTTATACCAGACAGCAATAAT
CGAGCACGGAGCTAACGAGCTACTTCAGCAGCTCACTGGTGAGGGTGGGGAGCTGTATATAGAT
ATGCATGTATGTGTATGTATATATAATTTTATAAATTCCCCACGTAAATTAATACATGCCCATG
TATACACACATTTGTGGAATATATTTGTATATATGTATGTACAGGTAAGAAACATCCCTAAGGT
TGTGTCTGGCCCTGCACCCAGGCATCAACTTAAAACCATCAGACCTCAGTTGTACAAGAGCAAG
GTTTGTTTAATAACTCGGAGCTCCGCAGCACCCAGATGTGAAGTCTGTCTGTCACACTCGGGTA
GCCTTGACAACCATCCTGTAATGCTGAACCTAGCATTCCAAAAGAATAAACATCAAGTTGTACC
GTGTGTGCGGTGTGTGTTGTTTACAGGGAGACGCACAGGCTGCTGGAGCCACACTTTGTATGCA
AGGTTTGTATTCAAATAGAGGACCAAAAGGAAAACTCCATGTAGATTCCATGTAGAAGATAGAG
TGCACCTGAATGCTGTTATACACTGTTCGTTTGCTACTTCCATATCTAAAAGCAGGGAGAAGTT
TTATCGTTGAAATAGGAAGGGCAGAAGCATTCAGGCCATATATTAGTGTTTTGTTTTTCCTCCT
CACTTGAAAAGTCACAACAGGAAGCCAGGTAAAGTTCCTGGGTTTCATCAGAAAGTACATGTGC
ATACTGGCAAACAATTTCTCAAGATAAAGCATCTTGTCCTTTTTGTGAGGAACAGTGACATTTT
AAAAACCTTTTATTGTAAAATGTAAAGCCACACATTTTCGTTTCCCAACAAAGGCACATGACCC
AGAGTATGGTACGTGTCCGTCCGACAGTGGGGAACACTACTGAGGAAGGGCATGTGTTAAACCC
GTTACCAGCTGTGTGGGGTGACTATGTACTAGTTATGTGTTTAAAATGTGTGGGTTTTGGAGCT
CAAATATACACGGTAGTGTTGGTGCTGAACTGGATTGTGGGTTCATGGAATCCATTGTACTACT
GTTGAAATTTTCAAATTGTTAATTACATTTAGGGTTGATCAAACATTGTTTCTTGTAGGAAAGC
CTAAGATTCAAGGTTCTGGGTCAAATTTATACACACCACTCACAAATCCTAGTCTTGGAGGAGA
GCTGGTTACTTGGTCCTCTATTGAGATGGTTTATAGAGGTTTGGGCAAATGTTAGTATCCAGGG
GTGCCATCTGAAGGTGTGACAGTGTGGCATCATGCCCCTTGAATGTACTTGATCTCAGAACTCA
GCCGGGTCAGGCACCTTAGTCCTTGCAGAGAGCATGACCATTTAAGTGACAAAACTGCAGCTAC
GAACACAATAGAGCTAGGCACGGTGGCACACGACGTTAATCCCAGCACTCAGGAGGTAGACGTA
GATGGATTTTTTTTTTTTCTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCTTTGCGCTT
GCTAGGCAAGCGCTCTCCCACTGAGCTAAATCCCCAACCCCTGATGGATCTCTTGAGTTCGAGG
CCAGCCTGGGCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCTTGTCTCAAA
ACGATAACAAACCAACGAAATAGAATTTGCAGGGAAGAACAATGTCTATGTTGAGTTTTGCCCA
CTAACCTGGCCTTGTATCTTCTTCAGACCTCAACTTCCCAGGACCCGATGGTACTGGGGGGATT
AAGTGACATTATAAATGCAGGGGTGTCTGTAATCAAATGTCAAAAAAATTCAGTGTGAATCAAT
ACAATAAAAACTTGAGTTTTGCTACCAA

hide sequence

RefSeq Acc Id:

XM_039085850 ⟹ XP_038941778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	244,124,176 - 244,155,024 (+)	NCBI
mRatBN7.2	1	234,711,618 - 234,741,538 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178846	(Get FASTA)	NCBI Sequence Viewer
	NP_001426331	(Get FASTA)	NCBI Sequence Viewer
	XP_006231394	(Get FASTA)	NCBI Sequence Viewer
	XP_038941778	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM13191	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024465.8
	ENSRNOP00000071913.3
	ENSRNOP00000080583
	ENSRNOP00000080583.1
	ENSRNOP00000091184.1

RefSeq Acc Id:

NP_001178846 ⟸ NM_001191917

- Peptide Label:

precursor

- Sequence:

show sequence

MGYQACPVFLLILDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWD
TRIAAGQAVEAIVKNVPEWNPVPRTKQEPTECSMEDSSTTDRLNFDRFDICRLLQHGASLLGSA
GAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPTSAALVNK
QSTLQAAELIDSEFRAGMSNRQKNKAKRMAKLFAKQRSRDAVETNEKSNDSTDGEPEEKRRKVA
NVVINQTASDAKVLIDNVPESSSFIEETNEWPLESFCEELCNDLFNPSWEVRHGAGTGLREILK
AHGKSGGKMGDSTLEEMIQQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVV
LKHMNETGVHKTVDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDL
DDDVRAVAAASLVPVVESLVYLQTQKVPSIINTLWDSLLELDDLTASTNSIMTLLSSMLTYPQV
QQCSIQQSLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDQNSSSWLIPILSDMLRHIFQF
CVLESSQEILDLIHKVWMELLSKASVQYVVAAACPWMGAWLCLMMQPSHLPIDLNMLLEVKART
KEKTGGKVRQGQMQSKEVLQEYIAGADTIMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVN
MVNQEIKPAESLGQLLLFHLNSKSALQRISAALVICEWAALQKECKAVTLAVQPRLLDILSEHL
YYDEIAVPFTRMQNECKQFISSLADAHIEVGNRVNNNVLTIDQANDLVTTLFNEVTSTFDLNPQ
VLQQLDSKRHQVQMTVAETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEEN
TLVQNYAAQYIAKLLQQCTTRTPCPNSKVIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGSN
SEKDGMHHTVTKHRGIITLYRHQKAAFAITSRRGPIPKAIKAQIADLPAGSSGNILVELDEGQK
PYLVQRRGAEFALTTVVKHFGAEMALKLPHLWDAMVGPLKTMIDLNNFDGKSLLERGDAPAQEL
VNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVMSKIATMETMNIFL
EKVLPWLGAIDDNVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTDSVRFMATQCF
ATLIRLMPLEAGIPDPPNMSEELIQLKAKERHFLEQLLDGKKLENYKIPVPINAELRKYQQDGV
NWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCQRAQEYARSKLAECMPLPSLVVCPPTLT
GHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCI
LDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYG
KPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQ
LYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFK
NTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGTSSESGTESVVAQHRILIFCQLKSMLD
IVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVV
FVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSL
QSMGTDQLLDLFTLDKDGKAEKADSSTSGKASMKSVLENLSDLWDAEQYDSEYNLETFMRSLE

hide sequence

RefSeq Acc Id:

XP_006231394 ⟸ XM_006231332

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRIAAGQ
AVEAIVKNVPEWNPVPRTKQEPTECSMEDSSTTDRLNFDRFDICRLLQHGASLLGSAGAEFEVQ
DEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPTSAALVNKQSTLQAA
ELIDSEFRAGMSNRQKNKAKRMAKLFAKQRSRDAVETNEKSNDSTDGEPEEKRRKVANVVINQT
ASDAKVLIDNVPESSSFIEETNEWPLESFCEELCNDLFNPSWEVRHGAGTGLREILKAHGKSGG
KMGDSTLEEMIQQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNET
GVHKTVDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAV
AAASLVPVVESLVYLQTQKVPSIINTLWDSLLELDDLTASTNSIMTLLSSMLTYPQVQQCSIQQ
SLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDQNSSSWLIPILSDMLRHIFQFCVLESSQ
EILDLIHKVWMELLSKASVQYVVAAACPWMGAWLCLMMQPSHLPIDLNMLLEVKARTKEKTGGK
VRQGQMQSKEVLQEYIAGADTIMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVNMVNQEIK
PAESLGQLLLFHLNSKSALQRISAALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEIAV
PFTRMQNECKQFISSLADAHIEVGNRVNNNVLTIDQANDLVTTLFNEVTSTFDLNPQVLQQLDS
KRHQVQMTVAETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYA
AQYIAKLLQQCTTRTPCPNSKVIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGSNSEKDGMH
HTVTKHRGIITLYRHQKAAFAITSRRGPIPKAIKAQIADLPAGSSGNILVELDEGQKPYLVQRR
GAEFALTTVVKHFGAEMALKLPHLWDAMVGPLKTMIDLNNFDGKSLLERGDAPAQELVNSLQVF
ETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVMSKIATMETMNIFLEKVLPWL
GAIDDNVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTDSVRFMATQCFATLIRLM
PLEAGIPDPPNMSEELIQLKAKERHFLEQLLDGKKLENYKIPVPINAELRKYQQDGVNWLAFLN
KYKLHGILCDDMGLGKTLQSICILAGDHCQRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEV
GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVI
KNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASR
DARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAK
SRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKNTTEKLA
VQNSSLHDIQHAPKLSALKQLLLDCGLGNGTSSESGTESVVAQHRILIFCQLKSMLDIVEHDLL
KPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWN
PMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQ
LLDLFTLDKDGKAEKADSSTSGKASMKSVLENLSDLWDAEQYDSEYNLETFMRSLE

hide sequence

Ensembl Acc Id:

ENSRNOP00000024465 ⟸ ENSRNOT00000024465

Ensembl Acc Id:

ENSRNOP00000071913 ⟸ ENSRNOT00000081786

RefSeq Acc Id:	XP_038941778 ⟸ XM_039085850
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000095886 ⟸ ENSRNOT00000095159

Ensembl Acc Id:

ENSRNOP00000091184 ⟸ ENSRNOT00000118235

Ensembl Acc Id:

ENSRNOP00000086478 ⟸ ENSRNOT00000111452

Ensembl Acc Id:

ENSRNOP00000080583 ⟸ ENSRNOT00000113933

Protein Domains

Helicase ATP-binding Helicase C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LW16-F1-model_v2	AlphaFold	F1LW16	1-1855	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564130	AgrOrtholog
BioCyc Gene	G2FUF-55813	BioCyc
Ensembl Genes	ENSRNOG00000017938	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024465.8	UniProtKB/TrEMBL
	ENSRNOT00000081786.3	UniProtKB/TrEMBL
	ENSRNOT00000113933	ENTREZGENE
	ENSRNOT00000113933.2	UniProtKB/TrEMBL
	ENSRNOT00000118235.2	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
	3.40.50.10810	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	DEAD-like_helicase	UniProtKB/TrEMBL
	DUF3535	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	Mot1	UniProtKB/TrEMBL
	Mot1_ATP_bd	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SNF2-like_sf	UniProtKB/TrEMBL
	SNF2/RAD54-like_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
NCBI Gene	368042	ENTREZGENE
PANTHER	PTHR36498	UniProtKB/TrEMBL
	TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172	UniProtKB/TrEMBL
Pfam	DUF3535	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
PhenoGen	Btaf1	PhenoGen
PROSITE	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017938	RatGTEx
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2K1N4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZQD2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AB43_RAT	UniProtKB/TrEMBL
	F1LW16_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Btaf1	B-TFIID TATA-box binding protein associated factor 1	Btaf1	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-11-19	Btaf1	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa	Btaf1	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Btaf1	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)	RGD1564130_predicted	similar to TBP-associated factor 172 (TAF-172) (TAF(II)170) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564130_predicted	similar to TBP-associated factor 172 (TAF-172) (TAF(II)170) (predicted)	LOC368042	similar to TBP-associated factor 172 (TAF-172) (TAF(II)170)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC368042	similar to TBP-associated factor 172 (TAF-172) (TAF(II)170)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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