Sertad2 (SERTA domain containing 2) - Rat Genome Database

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Gene: Sertad2 (SERTA domain containing 2) Rattus norvegicus
Analyze
Symbol: Sertad2
Name: SERTA domain containing 2
RGD ID: 1564049
Description: Predicted to enable transcription coactivator activity. Predicted to act upstream of or within negative regulation of cell growth and positive regulation of DNA-templated transcription. Predicted to be active in cytoplasm and nucleus. Orthologous to human SERTAD2 (SERTA domain containing 2); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: SERTA domain-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81498,935,428 - 99,039,536 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1498,934,769 - 99,041,468 (+)EnsemblGRCr8
mRatBN7.21494,733,637 - 94,838,200 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1494,733,579 - 94,838,313 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1499,115,319 - 99,180,695 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014100,355,600 - 100,420,982 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01496,823,151 - 96,888,665 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014104,786,649 - 104,890,022 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14104,821,215 - 104,886,197 (+)Ensemblrn6Rnor6.0
Rnor_5.014104,518,157 - 104,620,782 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414101,372,813 - 101,445,258 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1493,783,742 - 93,849,037 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (EXP,ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,6-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cycloheximide  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
glyphosate  (EXP)
hydralazine  (ISO)
leflunomide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
zinc dichloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11331592   PMID:16098148  


Genomics

Comparative Map Data
Sertad2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81498,935,428 - 99,039,536 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1498,934,769 - 99,041,468 (+)EnsemblGRCr8
mRatBN7.21494,733,637 - 94,838,200 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1494,733,579 - 94,838,313 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1499,115,319 - 99,180,695 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014100,355,600 - 100,420,982 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01496,823,151 - 96,888,665 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014104,786,649 - 104,890,022 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14104,821,215 - 104,886,197 (+)Ensemblrn6Rnor6.0
Rnor_5.014104,518,157 - 104,620,782 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414101,372,813 - 101,445,258 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1493,783,742 - 93,849,037 (+)NCBICelera
Cytogenetic Map14q22NCBI
SERTAD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38264,631,621 - 64,653,913 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl264,631,621 - 64,751,005 (-)Ensemblhg38GRCh38
GRCh37264,858,755 - 64,881,047 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36264,712,260 - 64,734,550 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34264,770,406 - 64,792,697NCBI
Celera264,704,952 - 64,727,240 (-)NCBICelera
Cytogenetic Map2p14NCBI
HuRef264,592,325 - 64,614,547 (-)NCBIHuRef
CHM1_1264,790,087 - 64,812,370 (-)NCBICHM1_1
T2T-CHM13v2.0264,641,067 - 64,663,350 (-)NCBIT2T-CHM13v2.0
Sertad2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391120,493,166 - 20,603,023 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1120,493,253 - 20,603,021 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381120,543,166 - 20,653,023 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,543,253 - 20,653,021 (+)Ensemblmm10GRCm38
MGSCv371120,443,256 - 20,553,026 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361120,443,256 - 20,553,026 (+)NCBIMGSCv36mm8
Celera1122,690,717 - 22,799,179 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.03NCBI
Sertad2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542419,792,634 - 19,793,578 (+)Ensembl
ChiLan1.0NW_00495542419,683,745 - 19,797,889 (+)NCBIChiLan1.0ChiLan1.0
SERTAD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21261,645,728 - 61,768,247 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A61,649,768 - 61,772,197 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A64,698,578 - 64,815,453 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A65,821,440 - 65,940,448 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A65,825,740 - 65,826,684 (-)EnsemblpanPan2panpan1.1
LOC612407
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11064,202,004 - 64,210,579 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1064,089,223 - 64,112,138 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
Sertad2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629219,004,128 - 19,114,033 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364919,461,624 - 9,462,568 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364919,457,259 - 9,566,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERTAD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl377,293,508 - 77,317,328 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1377,192,570 - 77,317,327 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2381,032,357 - 81,155,707 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SERTAD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11442,264,679 - 42,386,713 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1442,381,395 - 42,382,339 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604569,492,212 - 69,615,309 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sertad2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247628,863,965 - 8,864,909 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247628,755,451 - 8,869,190 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Sertad2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11188,805,021 - 88,888,719 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sertad2
607 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:45
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000007162
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582201Sffal2Serum free fatty acids level QTL 240.0002blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)1496755448100078267Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)1486271332100078267Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat

Markers in Region
AW533906  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81499,025,033 - 99,025,223 (+)Marker Load Pipeline
mRatBN7.21494,823,697 - 94,823,887 (+)MAPPERmRatBN7.2
Rnor_6.014104,875,520 - 104,875,709NCBIRnor6.0
Rnor_5.014104,606,280 - 104,606,469UniSTSRnor5.0
RGSC_v3.414101,434,591 - 101,434,780UniSTSRGSC3.4
Celera1493,838,394 - 93,838,583UniSTS
RH 3.4 Map14745.79UniSTS
Cytogenetic Map14q22UniSTS
RH141668  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81499,035,286 - 99,035,487 (+)Marker Load Pipeline
mRatBN7.21494,833,950 - 94,834,151 (+)MAPPERmRatBN7.2
Rnor_6.014104,885,773 - 104,885,973NCBIRnor6.0
Rnor_5.014104,616,533 - 104,616,733UniSTSRnor5.0
RGSC_v3.414101,444,831 - 101,445,031UniSTSRGSC3.4
Celera1493,848,610 - 93,848,810UniSTS
RH 3.4 Map14748.59UniSTS
Cytogenetic Map14q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
19 13 76 200 91 90 59 141 59 6 447 256 17 182 105 108 31 34 34

Sequence


Ensembl Acc Id: ENSRNOT00000007162   ⟹   ENSRNOP00000007162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1498,970,347 - 99,035,688 (+)Ensembl
mRatBN7.2 Ensembl1494,768,895 - 94,834,375 (+)Ensembl
Rnor_6.0 Ensembl14104,821,215 - 104,886,197 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094557   ⟹   ENSRNOP00000083200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1494,825,160 - 94,834,788 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095653   ⟹   ENSRNOP00000092548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1498,952,424 - 99,041,468 (+)Ensembl
mRatBN7.2 Ensembl1494,816,673 - 94,838,313 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100709   ⟹   ENSRNOP00000097664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1498,935,039 - 99,041,468 (+)Ensembl
mRatBN7.2 Ensembl1494,822,846 - 94,838,313 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101462   ⟹   ENSRNOP00000093814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1498,934,988 - 99,040,042 (+)Ensembl
mRatBN7.2 Ensembl1494,821,115 - 94,838,308 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101884   ⟹   ENSRNOP00000085547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1498,969,980 - 99,036,315 (+)Ensembl
mRatBN7.2 Ensembl1494,811,895 - 94,834,788 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109480   ⟹   ENSRNOP00000091310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1498,934,769 - 99,040,319 (+)Ensembl
mRatBN7.2 Ensembl1494,832,433 - 94,838,185 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112480   ⟹   ENSRNOP00000077181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1499,008,604 - 99,040,319 (+)Ensembl
mRatBN7.2 Ensembl1494,816,098 - 94,838,185 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115608   ⟹   ENSRNOP00000087632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1498,934,979 - 99,039,536 (+)Ensembl
mRatBN7.2 Ensembl1494,733,579 - 94,838,313 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119018   ⟹   ENSRNOP00000081026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1494,829,051 - 94,838,185 (+)Ensembl
RefSeq Acc Id: NM_001024903   ⟹   NP_001020074
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81498,970,246 - 99,035,714 (+)NCBI
mRatBN7.21494,768,895 - 94,834,378 (+)NCBI
Rnor_6.014104,821,215 - 104,886,200 (+)NCBI
Rnor_5.014104,518,157 - 104,620,782 (+)NCBI
RGSC_v3.414101,372,813 - 101,445,258 (+)RGD
Celera1493,783,742 - 93,849,037 (+)RGD
Sequence:
RefSeq Acc Id: XM_006251526   ⟹   XP_006251588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81498,935,428 - 99,039,536 (+)NCBI
mRatBN7.21494,733,637 - 94,838,200 (+)NCBI
Rnor_6.014104,786,649 - 104,890,022 (+)NCBI
Rnor_5.014104,518,157 - 104,620,782 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039092325   ⟹   XP_038948253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,018,036 - 99,039,536 (+)NCBI
mRatBN7.21494,816,734 - 94,838,200 (+)NCBI
RefSeq Acc Id: XM_039092326   ⟹   XP_038948254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,017,547 - 99,039,536 (+)NCBI
mRatBN7.21494,816,208 - 94,838,200 (+)NCBI
RefSeq Acc Id: XM_063273497   ⟹   XP_063129567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81498,999,535 - 99,039,536 (+)NCBI
RefSeq Acc Id: XM_063273498   ⟹   XP_063129568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,018,882 - 99,039,536 (+)NCBI
RefSeq Acc Id: NP_001020074   ⟸   NM_001024903
- UniProtKB: F7F8X3 (UniProtKB/TrEMBL),   A0A8I5ZWR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251588   ⟸   XM_006251526
- Peptide Label: isoform X2
- UniProtKB: Q4V7A7 (UniProtKB/TrEMBL),   A6JQ25 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007162   ⟸   ENSRNOT00000007162
RefSeq Acc Id: XP_038948254   ⟸   XM_039092326
- Peptide Label: isoform X2
- UniProtKB: Q4V7A7 (UniProtKB/TrEMBL),   A6JQ25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948253   ⟸   XM_039092325
- Peptide Label: isoform X2
- UniProtKB: Q4V7A7 (UniProtKB/TrEMBL),   A6JQ25 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085547   ⟸   ENSRNOT00000101884
Ensembl Acc Id: ENSRNOP00000077181   ⟸   ENSRNOT00000112480
Ensembl Acc Id: ENSRNOP00000083200   ⟸   ENSRNOT00000094557
Ensembl Acc Id: ENSRNOP00000097664   ⟸   ENSRNOT00000100709
Ensembl Acc Id: ENSRNOP00000087632   ⟸   ENSRNOT00000115608
Ensembl Acc Id: ENSRNOP00000091310   ⟸   ENSRNOT00000109480
Ensembl Acc Id: ENSRNOP00000092548   ⟸   ENSRNOT00000095653
Ensembl Acc Id: ENSRNOP00000081026   ⟸   ENSRNOT00000119018
Ensembl Acc Id: ENSRNOP00000093814   ⟸   ENSRNOT00000101462
RefSeq Acc Id: XP_063129567   ⟸   XM_063273497
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A0D3 (UniProtKB/TrEMBL),   A0A8I5ZWR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129568   ⟸   XM_063273498
- Peptide Label: isoform X2
- UniProtKB: Q4V7A7 (UniProtKB/TrEMBL),   A6JQ25 (UniProtKB/TrEMBL)
Protein Domains
SERTA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7F8X3-F1-model_v2 AlphaFold F7F8X3 1-364 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564049 AgrOrtholog
BioCyc Gene G2FUF-14853 BioCyc
Ensembl Genes ENSRNOG00000005393 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007162 ENTREZGENE
  ENSRNOT00000007162.6 UniProtKB/TrEMBL
  ENSRNOT00000095653 ENTREZGENE
  ENSRNOT00000095653.2 UniProtKB/TrEMBL
  ENSRNOT00000100709 ENTREZGENE
  ENSRNOT00000100709.2 UniProtKB/TrEMBL
  ENSRNOT00000101462.2 UniProtKB/TrEMBL
  ENSRNOT00000101884 ENTREZGENE
  ENSRNOT00000101884.2 UniProtKB/TrEMBL
  ENSRNOT00000109480.2 UniProtKB/TrEMBL
  ENSRNOT00000112480 ENTREZGENE
  ENSRNOT00000112480.2 UniProtKB/TrEMBL
  ENSRNOT00000115608.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7457109 IMAGE-MGC_LOAD
InterPro E2F-SERTA_domain_protein UniProtKB/TrEMBL
  SERTA UniProtKB/TrEMBL
KEGG Report rno:498423 UniProtKB/TrEMBL
MGC_CLONE MGC:116204 IMAGE-MGC_LOAD
NCBI Gene 498423 ENTREZGENE
PANTHER CELL DIVISION CYCLE ASSOCIATED PROTEIN 4/SERTA DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  SERTA DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam SERTA UniProtKB/TrEMBL
PhenoGen Sertad2 PhenoGen
PROSITE SERTA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005393 RatGTEx
UniProt A0A8I5ZWR0 ENTREZGENE
  A0A8I6A0D3 ENTREZGENE, UniProtKB/TrEMBL
  A6JQ25 ENTREZGENE, UniProtKB/TrEMBL
  F7F8X3 ENTREZGENE, UniProtKB/TrEMBL
  Q4V7A7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-02-09 Sertad2  SERTA domain containing 2      Symbol and Name status set to provisional 70820 PROVISIONAL