Rpl26-ps3 (ribosomal protein L26, pseudogene 3) - Rat Genome Database

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Gene: Rpl26-ps3 (ribosomal protein L26, pseudogene 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl26-ps3
Name: ribosomal protein L26, pseudogene 3
RGD ID: 1563840
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation and ribosomal large subunit biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit; INTERACTS WITH trichloroethene.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 60S ribosomal protein L26-like; ENSRNOG00000067640; LOC100910721; LOC307636; RGD1563840; ribosomal protein L26-like 1; Rpl26l1; similar to 60S ribosomal protein L26
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rpl26  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,031,418 - 9,031,912 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl199,031,447 - 9,031,884 (+)EnsemblGRCr8
mRatBN7.2199,025,282 - 9,025,776 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,025,311 - 9,025,748 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl199,025,311 - 9,025,748 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx198,990,275 - 8,990,769 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,757,103 - 9,757,597 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,041,705 - 9,042,198 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0199,436,196 - 9,436,690 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,436,210 - 9,436,662 (+)Ensemblrn6Rnor6.0
Rnor_5.0199,421,991 - 9,422,431 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4199,479,529 - 9,479,966 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera198,923,202 - 8,923,696 (+)NCBICelera
Cytogenetic Map19p13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl26-ps3
7 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131969901Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124694445Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127361636Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000074845   ⟹   ENSRNOP00000065065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl199,031,447 - 9,031,884 (+)Ensembl
mRatBN7.2 Ensembl199,025,311 - 9,025,748 (+)Ensembl
Rnor_6.0 Ensembl199,436,210 - 9,436,662 (+)Ensembl
RefSeq Acc Id: XR_597122
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0199,436,225 - 9,436,666 (+)NCBI
RefSeq Acc Id: XR_598416
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera198,923,231 - 8,923,672 (+)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000065065.3
Ensembl Acc Id: ENSRNOP00000065065   ⟸   ENSRNOT00000074845
Protein Domains
KOW

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R6L3-F1-model_v2 AlphaFold M0R6L3 1-150 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700933
Promoter ID:EPDNEW_R11443
Type:single initiation site
Name:LOC100910721_1
Description:60S ribosomal protein L26-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0199,436,197 - 9,436,257EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563840 AgrOrtholog
BioCyc Gene G2FUF-6563 BioCyc
Ensembl Genes ENSRNOG00000061282 Ensembl
  ENSRNOG00000067640 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074845.4 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.30 UniProtKB/TrEMBL
InterPro KOW UniProtKB/TrEMBL
  KOW_RPL26/RPL24 UniProtKB/TrEMBL
  Rib_L2_dom2 UniProtKB/TrEMBL
  Ribosomal_L24/26_CS UniProtKB/TrEMBL
  Ribosomal_L26/L24P_euk/arc UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
NCBI Gene 307636 ENTREZGENE
PANTHER PTHR11143 UniProtKB/TrEMBL
Pfam KOW UniProtKB/TrEMBL
  Ribosomal_L26 UniProtKB/TrEMBL
PhenoGen Rpl26-ps3 PhenoGen
PROSITE RIBOSOMAL_L24 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000061282 RatGTEx
  ENSRNOG00000067640 RatGTEx
SMART KOW UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt M0R6L3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Rpl26-ps3  ribosomal protein L26, pseudogene 3  ENSRNOG00000067640    Data merged from RGD:150341450 737654 PROVISIONAL
2021-08-31 ENSRNOG00000067640        Symbol and Name status set to provisional 45752 PROVISIONAL
2021-03-09 Rpl26-ps3  ribosomal protein L26, pseudogene 3  LOC100910721  60S ribosomal protein L26-like  Data merged from RGD:6497033 737654 PROVISIONAL
2012-07-05 LOC100910721  60S ribosomal protein L26-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2011-01-14 Rpl26-ps3  ribosomal protein L26, pseudogene 3  Rpl26l1  ribosomal protein L26-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Rpl26l1  ribosomal protein L26-like 1  RGD1563840_predicted  similar to 60S ribosomal protein L26 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563840_predicted  similar to 60S ribosomal protein L26 (predicted)  LOC307636  similar to 60S ribosomal protein L26  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307636  similar to 60S ribosomal protein L26      Symbol and Name status set to provisional 70820 PROVISIONAL