Btf3-ps1 (basic transcription factor 3, pseudogene 1) - Rat Genome Database

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Gene: Btf3-ps1 (basic transcription factor 3, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Btf3-ps1
Name: basic transcription factor 3, pseudogene 1
RGD ID: 1563812
Description: Predicted to be part of nascent polypeptide-associated complex. Predicted to be active in cytosol; INTERACTS WITH 17alpha-ethynylestradiol; bisphenol A; manganese(II) chloride.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: AABR07021871.1; LOC498293; RGD1563812; similar to basic transcription factor 3
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Btf3  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81392,576,828 - 92,577,687 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1392,576,937 - 92,577,425 (+)EnsemblGRCr8
mRatBN7.21390,044,786 - 90,045,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1390,044,753 - 90,045,664 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1392,550,033 - 92,550,892 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01393,950,172 - 93,951,031 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01391,131,684 - 91,132,543 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01396,195,836 - 96,196,695 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1396,195,836 - 96,196,695 (+)NCBIrn6Rnor6.0
Rnor_5.013100,637,270 - 100,638,129 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41393,944,814 - 93,945,349 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1389,603,784 - 89,604,643 (+)NCBICelera
Cytogenetic Map13q25NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Btf3-ps1
2 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:21
Interacting mature miRNAs:23
Transcripts:ENSRNOT00000042547
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
D1S2012E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X115,210,686 - 115,211,098 (+)MAPPERmRatBN7.2
mRatBN7.21390,044,475 - 90,045,330 (+)MAPPERmRatBN7.2
Rnor_6.0X122,585,474 - 122,585,885NCBIRnor6.0
Rnor_6.01396,195,526 - 96,196,380NCBIRnor6.0
Rnor_5.013100,636,960 - 100,637,814UniSTSRnor5.0
Rnor_5.0X122,735,181 - 122,735,592UniSTSRnor5.0
Cytogenetic Map13q25UniSTS
Cytogenetic MapXq12UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000042547   ⟹   ENSRNOP00000064698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1390,044,753 - 90,045,664 (+)Ensembl
RefSeq Acc Id: XM_001060668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1389,603,789 - 89,604,666 (+)NCBI
RefSeq Acc Id: XM_003751281   ⟹   XP_003751329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.013100,637,275 - 100,638,152 (+)NCBI
RefSeq Acc Id: XM_003752679   ⟹   XP_003752727
Type: CODING
Position: No map positions available.
RefSeq Acc Id: XM_573521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.41393,944,814 - 93,945,349 (+)RGD
Protein Sequences
GenBank Protein EDL94797 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_003751329   ⟸   XM_003751281
RefSeq Acc Id: XP_003752727   ⟸   XM_003752679
Ensembl Acc Id: ENSRNOP00000064698   ⟸   ENSRNOT00000042547

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R5M7-F1-model_v2 AlphaFold M0R5M7 1-162 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563812 AgrOrtholog
BioCyc Gene G2FUF-17175 BioCyc
Ensembl Genes ENSRNOG00000031864 Ensembl
NCBI Gene 498293 ENTREZGENE
PhenoGen Btf3-ps1 PhenoGen
RatGTEx ENSRNOG00000031864 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Btf3-ps1  basic transcription factor 3, pseudogene 1  RGD1563812  similar to basic transcription factor 3  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1563812  similar to basic transcription factor 3  AABR07021871.1    Data merged from RGD:15003913 737654 PROVISIONAL
2019-11-08 AABR07021871.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1563812  similar to basic transcription factor 3   RGD1563812_predicted  similar to basic transcription factor 3 (predicted) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563812_predicted  similar to basic transcription factor 3 (predicted) (predicted)  LOC498293  similar to basic transcription factor 3 (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498293  similar to basic transcription factor 3 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL