Glcci1 (glucocorticoid induced 1) - Rat Genome Database

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Gene: Glcci1 (glucocorticoid induced 1) Rattus norvegicus
Analyze
Symbol: Glcci1
Name: glucocorticoid induced 1
RGD ID: 1563612
Description: Predicted to be active in cytoplasm. Orthologous to human GLCCI1 (glucocorticoid induced 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: glucocorticoid induced transcript 1; hypothetical LOC296884; hypothetical protein LOC296884; LOC296884; LOC500026; RGD1563612; similar to testhymin; uncharacterized protein LOC296884
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8437,274,271 - 37,601,898 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl437,529,364 - 37,599,802 (+)EnsemblGRCr8
GRCr8 Ensembl437,292,440 - 37,440,982 (+)EnsemblGRCr8
mRatBN7.2436,307,956 - 36,635,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl436,307,903 - 36,635,612 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx441,275,536 - 41,601,232 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0437,201,737 - 37,527,423 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0435,613,032 - 35,939,900 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0434,282,625 - 34,612,709 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl434,282,625 - 34,614,438 (+)Ensemblrn6Rnor6.0
Rnor_5.0434,142,803 - 34,470,794 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4433,307,545 - 33,478,219 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera431,811,535 - 32,136,116 (+)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
indole-3-methanol  (EXP)
leflunomide  (ISO)
menadione  (ISO)
methyl methanesulfonate  (ISO)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (EXP)
nickel sulfate  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulindac sulfide  (ISO)
testosterone  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
podocyte foot  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Glucocorticoid-Induced Transcription Factor 1 (GLCCI1) Variant Impacts the Short-Term Response to Intranasal Corticosteroids in Chinese Han Patients with Seasonal Allergic Rhinitis. Dai Y, etal., Med Sci Monit. 2018 Jul 7;24:4691-4697. doi: 10.12659/MSM.908814.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Association Between GLCCI1 Promoter Polymorphism (Rs37972) and Post-Transplant Hypertension in Renal Transplant Recipients. Hamada AM, etal., Kidney Blood Press Res. 2017;42(6):1155-1163. doi: 10.1159/000485862. Epub 2017 Dec 8.
4. GLCCI1 rs37973 does not influence treatment response to inhaled corticosteroids in white subjects with asthma. Hosking L, etal., J Allergy Clin Immunol. 2014 Feb;133(2):587-9. doi: 10.1016/j.jaci.2013.08.024. Epub 2013 Oct 13.
5. GLCCI1 Variation Is Associated with Asthma Susceptibility and Inhaled Corticosteroid Response in a Chinese Han Population. Hu C, etal., Arch Med Res. 2016 Feb;47(2):118-25. doi: 10.1016/j.arcmed.2016.04.005. Epub 2016 Apr 28.
6. Effects of STIP1 and GLCCI1 polymorphisms on the risk of childhood asthma and inhaled corticosteroid response in Chinese asthmatic children. Huang J, etal., BMC Pulm Med. 2020 Nov 18;20(1):303. doi: 10.1186/s12890-020-01332-2.
7. GLCCI1 gene body methylation in peripheral blood is associated with asthma and asthma severity. Jiang Y, etal., Clin Chim Acta. 2021 Dec;523:97-105. doi: 10.1016/j.cca.2021.09.006. Epub 2021 Sep 13.
8. GLCCI1 is a novel component associated with the PI3K signaling pathway in podocyte foot processes. Kim SH, etal., Exp Mol Med. 2016 May 13;48:e233. doi: 10.1038/emm.2016.28.
9. GLCCI1 rs37973: a potential genetic predictor of therapeutic response to inhaled corticosteroids in Chinese chronic obstructive pulmonary disease patients. Lei Y, etal., Sci Rep. 2017 Feb 10;7:42552. doi: 10.1038/srep42552.
10. Impact of genetic variants of GLCCI1 on operational therapy in Chinese chronic rhinosinusitis patients. Liu S, etal., Int Forum Allergy Rhinol. 2018 Nov;8(11):1356-1362. doi: 10.1002/alr.22220. Epub 2018 Sep 26.
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. GLCCI1 rs37973: A potential genetic predictor of therapeutic response to inhaled corticosteroids in Chinese asthma patients. Xu Y, etal., Medicine (Baltimore). 2017 Dec;96(52):e9442. doi: 10.1097/MD.0000000000009442.
14. A single-nucleotide polymorphism in a gene modulating glucocorticoid sensitivity is associated with the decline in total lung capacity after lung transplantation. Yamamoto H, etal., Surg Today. 2019 Mar;49(3):268-274. doi: 10.1007/s00595-018-1717-9. Epub 2018 Sep 18.
Additional References at PubMed
PMID:12477932   PMID:12557054  


Genomics

Comparative Map Data
Glcci1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8437,274,271 - 37,601,898 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl437,529,364 - 37,599,802 (+)EnsemblGRCr8
GRCr8 Ensembl437,292,440 - 37,440,982 (+)EnsemblGRCr8
mRatBN7.2436,307,956 - 36,635,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl436,307,903 - 36,635,612 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx441,275,536 - 41,601,232 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0437,201,737 - 37,527,423 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0435,613,032 - 35,939,900 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0434,282,625 - 34,612,709 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl434,282,625 - 34,614,438 (+)Ensemblrn6Rnor6.0
Rnor_5.0434,142,803 - 34,470,794 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4433,307,545 - 33,478,219 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera431,811,535 - 32,136,116 (+)NCBICelera
Cytogenetic Map4q21NCBI
GLCCI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3877,968,796 - 8,089,080 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl77,968,796 - 8,094,272 (+)Ensemblhg38GRCh38
GRCh3778,008,427 - 8,128,710 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3677,974,948 - 8,095,235 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3477,781,664 - 7,900,209NCBI
Celera77,976,156 - 8,096,458 (+)NCBICelera
Cytogenetic Map7p21.3NCBI
HuRef77,858,183 - 7,978,546 (+)NCBIHuRef
CHM1_178,008,121 - 8,128,474 (+)NCBICHM1_1
T2T-CHM13v2.078,087,312 - 8,207,580 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v278,054,543 - 8,174,916 (+)NCBI
Glcci1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3968,509,600 - 8,597,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl68,509,600 - 8,597,548 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3868,509,600 - 8,597,549 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl68,509,600 - 8,597,548 (+)Ensemblmm10GRCm38
MGSCv3768,459,596 - 8,547,548 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3668,209,451 - 8,547,480 (+)NCBIMGSCv36mm8
Celera68,641,891 - 8,740,021 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map64.38NCBI
Glcci1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543215,026,500 - 15,112,551 (+)Ensembl
ChiLan1.0NW_00495543215,060,239 - 15,112,545 (+)NCBIChiLan1.0ChiLan1.0
GLCCI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2612,868,928 - 12,989,127 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1761,193,195 - 61,313,843 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v078,693,516 - 8,814,168 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.178,044,662 - 8,163,618 (+)NCBIPanPan1.1PanPan1.1panPan2
GLCCI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11423,555,864 - 23,657,110 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1423,267,136 - 23,654,725 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1423,131,823 - 23,232,119 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01423,371,275 - 23,471,855 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1423,371,348 - 23,471,849 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11423,523,214 - 23,623,472 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01423,262,350 - 23,362,568 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01423,514,213 - 23,614,530 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Glcci1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511836,901,546 - 36,987,428 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365851,875,144 - 1,960,345 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365851,875,858 - 1,960,345 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLCCI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl978,217,213 - 78,334,077 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1978,218,180 - 78,334,085 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2985,842,474 - 85,942,751 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLCCI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12150,121,781 - 50,243,181 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2150,124,311 - 50,241,380 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604254,150,118 - 54,275,578 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glcci1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248135,603,001 - 5,705,042 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Glcci1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16129,816,197 - 129,883,811 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Glcci1
2711 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:550
Count of miRNA genes:256
Interacting mature miRNAs:314
Transcripts:ENSRNOT00000011138
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43539660045429897Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42228845340471598Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41891315163913151Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43353881653719714Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42228845345429897Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat

Markers in Region
D4Rat11  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2436,405,146 - 36,405,277 (+)MAPPERmRatBN7.2
Rnor_6.0434,379,764 - 34,379,894NCBIRnor6.0
Rnor_5.0434,239,942 - 34,240,072UniSTSRnor5.0
RGSC_v3.4433,407,579 - 33,407,710RGDRGSC3.4
RGSC_v3.4433,407,580 - 33,407,710UniSTSRGSC3.4
Celera431,908,716 - 31,908,832UniSTS
RGSC_v3.1433,526,120 - 33,526,250RGD
RH 3.4 Map4205.6RGD
RH 3.4 Map4205.6UniSTS
SHRSP x BN Map418.1199UniSTS
SHRSP x BN Map418.1199RGD
FHH x ACI Map423.1799RGD
Cytogenetic Map4q21UniSTS
D4Rat89  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8437,410,246 - 37,410,427 (+)Marker Load Pipeline
mRatBN7.2436,443,947 - 36,444,128 (+)MAPPERmRatBN7.2
Rnor_6.0434,418,190 - 34,418,370NCBIRnor6.0
Rnor_5.0434,277,518 - 34,277,698UniSTSRnor5.0
RGSC_v3.4433,447,094 - 33,447,398RGDRGSC3.4
RGSC_v3.4433,447,158 - 33,447,338UniSTSRGSC3.4
Celera431,946,437 - 31,946,617UniSTS
RGSC_v3.1433,565,698 - 33,565,878RGD
RH 3.4 Map4205.5UniSTS
RH 3.4 Map4205.5RGD
RH 2.0 Map4244.5RGD
SHRSP x BN Map418.2RGD
FHH x ACI Map423.1799RGD
Cytogenetic Map4q21UniSTS
D4Got19  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8437,407,055 - 37,407,319 (+)Marker Load Pipeline
mRatBN7.2436,440,756 - 36,441,020 (+)MAPPERmRatBN7.2
Rnor_6.0434,414,999 - 34,415,262NCBIRnor6.0
Rnor_5.0434,274,327 - 34,274,590UniSTSRnor5.0
RGSC_v3.4433,443,966 - 33,444,230RGDRGSC3.4
RGSC_v3.4433,443,967 - 33,444,230UniSTSRGSC3.4
Celera431,943,246 - 31,943,509UniSTS
RGSC_v3.1433,562,507 - 33,562,770RGD
RH 3.4 Map4209.3UniSTS
RH 3.4 Map4209.3RGD
Cytogenetic Map4q21UniSTS
RH137566  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2436,473,047 - 36,473,242 (+)MAPPERmRatBN7.2
Rnor_6.0434,447,299 - 34,447,493NCBIRnor6.0
Rnor_5.0434,306,214 - 34,306,408UniSTSRnor5.0
RGSC_v3.4433,476,578 - 33,476,772UniSTSRGSC3.4
Celera431,975,591 - 31,975,785UniSTS
RH 3.4 Map4199.42UniSTS
Cytogenetic Map4q21UniSTS
RH129175  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8437,440,556 - 37,440,765 (+)Marker Load Pipeline
mRatBN7.2436,474,258 - 36,474,468 (+)MAPPERmRatBN7.2
Rnor_6.0434,448,510 - 34,448,719NCBIRnor6.0
Rnor_5.0434,307,425 - 34,307,634UniSTSRnor5.0
RGSC_v3.4433,477,789 - 33,477,998UniSTSRGSC3.4
Celera431,976,802 - 31,977,011UniSTS
RH 3.4 Map4199.4UniSTS
Cytogenetic Map4q21UniSTS
D20S1004  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2436,635,258 - 36,635,347 (+)MAPPERmRatBN7.2
Rnor_6.0434,614,085 - 34,614,173NCBIRnor6.0
Rnor_5.0434,472,170 - 34,472,258UniSTSRnor5.0
RGSC_v3.4433,659,661 - 33,659,749UniSTSRGSC3.4
Celera432,137,492 - 32,137,580UniSTS
Cytogenetic Map4q21UniSTS
RH79779  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2436,633,272 - 36,633,504 (+)MAPPERmRatBN7.2
Rnor_6.0434,612,099 - 34,612,330NCBIRnor6.0
Rnor_5.0434,470,184 - 34,470,415UniSTSRnor5.0
RGSC_v3.4433,657,672 - 33,657,903UniSTSRGSC3.4
Celera432,135,506 - 32,135,737UniSTS
Cytogenetic Map4q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000011138   ⟹   ENSRNOP00000011138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl436,307,956 - 36,624,791 (+)Ensembl
Rnor_6.0 Ensembl434,282,625 - 34,612,709 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086735   ⟹   ENSRNOP00000068976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl437,529,364 - 37,599,802 (+)Ensembl
mRatBN7.2 Ensembl436,307,996 - 36,635,612 (+)Ensembl
Rnor_6.0 Ensembl434,282,665 - 34,614,438 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094443   ⟹   ENSRNOP00000094429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl437,292,440 - 37,439,439 (+)Ensembl
mRatBN7.2 Ensembl436,307,903 - 36,473,142 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111109   ⟹   ENSRNOP00000091830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl436,561,100 - 36,635,612 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113682   ⟹   ENSRNOP00000097831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl437,292,440 - 37,440,980 (+)Ensembl
mRatBN7.2 Ensembl436,307,953 - 36,474,684 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000137968   ⟹   ENSRNOP00000099316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl437,293,086 - 37,440,982 (+)Ensembl
RefSeq Acc Id: NM_001177442   ⟹   NP_001170913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8437,274,271 - 37,600,167 (+)NCBI
mRatBN7.2436,307,956 - 36,633,883 (+)NCBI
Rnor_6.0434,282,625 - 34,612,709 (+)NCBI
Rnor_5.0434,142,803 - 34,470,794 (+)NCBI
Celera431,811,535 - 32,136,116 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107260   ⟹   XP_038963188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8437,527,872 - 37,601,898 (+)NCBI
mRatBN7.2436,563,082 - 36,635,614 (+)NCBI
RefSeq Acc Id: XM_039107261   ⟹   XP_038963189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8437,527,872 - 37,601,898 (+)NCBI
mRatBN7.2436,563,082 - 36,635,614 (+)NCBI
RefSeq Acc Id: XM_039107262   ⟹   XP_038963190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8437,527,872 - 37,601,898 (+)NCBI
mRatBN7.2436,563,082 - 36,635,614 (+)NCBI
RefSeq Acc Id: XM_063285724   ⟹   XP_063141794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8437,529,789 - 37,601,898 (+)NCBI
RefSeq Acc Id: NP_001170913   ⟸   NM_001177442
- Peptide Label: precursor
- Sequence:
Ensembl Acc Id: ENSRNOP00000068976   ⟸   ENSRNOT00000086735
Ensembl Acc Id: ENSRNOP00000011138   ⟸   ENSRNOT00000011138
RefSeq Acc Id: XP_038963188   ⟸   XM_039107260
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038963190   ⟸   XM_039107262
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038963189   ⟸   XM_039107261
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000091830   ⟸   ENSRNOT00000111109
Ensembl Acc Id: ENSRNOP00000094429   ⟸   ENSRNOT00000094443
Ensembl Acc Id: ENSRNOP00000097831   ⟸   ENSRNOT00000113682
RefSeq Acc Id: XP_063141794   ⟸   XM_063285724
- Peptide Label: isoform X4
- UniProtKB: A6IDX5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099316   ⟸   ENSRNOT00000137968

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYK0-F1-model_v2 AlphaFold B2RYK0 1-430 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692875
Promoter ID:EPDNEW_R3399
Type:multiple initiation site
Name:Glcci1_1
Description:glucocorticoid induced 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0434,282,656 - 34,282,716EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563612 AgrOrtholog
BioCyc Gene G2FUF-45659 BioCyc
Ensembl Genes ENSRNOG00000008524 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000076831 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000086735 ENTREZGENE
  ENSRNOT00000086735.3 UniProtKB/TrEMBL
  ENSRNOT00000137968.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7939013 IMAGE-MGC_LOAD
InterPro Glcci1/FAM117 UniProtKB/TrEMBL
KEGG Report rno:296884 UniProtKB/TrEMBL
MGC_CLONE MGC:188609 IMAGE-MGC_LOAD
NCBI Gene Glcci1 ENTREZGENE
PANTHER PTHR14972 UniProtKB/TrEMBL
  PTHR14972:SF3 UniProtKB/TrEMBL
Pfam FAM117 UniProtKB/TrEMBL
PhenoGen Glcci1 PhenoGen
RatGTEx ENSRNOG00000008524 RatGTEx
  ENSRNOG00000076831 RatGTEx
UniProt A0A0G2JU60_RAT UniProtKB/TrEMBL
  A0A8I6ACU6 ENTREZGENE
  A0ABK0L633_RAT UniProtKB/TrEMBL
  A6IDX5 ENTREZGENE, UniProtKB/TrEMBL
  B2RYK0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-02-25 Glcci1  glucocorticoid induced 1  Glcci1  glucocorticoid induced transcript 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-06-27 Glcci1  glucocorticoid induced transcript 1  LOC296884  hypothetical LOC296884  Data merged from RGD:1561164 737654 APPROVED
2010-05-07 Glcci1  glucocorticoid induced transcript 1  RGD1563612  similar to testhymin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563612  similar to testhymin   RGD1563612_predicted  similar to testhymin (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563612_predicted  similar to testhymin (predicted)  LOC500026  similar to testhymin  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500026  similar to testhymin      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-02-09 LOC296884  hypothetical LOC296884      Symbol and Name status set to provisional 70820 PROVISIONAL