Kdm4dl2 (lysine (K)-specific demethylase 4D-like 2) - Rat Genome Database

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Gene: Kdm4dl2 (lysine (K)-specific demethylase 4D-like 2) Rattus norvegicus
Analyze
Symbol: Kdm4dl2
Name: lysine (K)-specific demethylase 4D-like 2
RGD ID: 1563367
Description: INTERACTS WITH bisphenol A
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Kdm4dl; LOC500944; lysine (K)-specific demethylase 4D-like; lysine-specific demethylase 4D-like; RGD1563367; similar to jumonji domain containing 2D
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8819,550,354 - 19,561,106 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2811,269,547 - 11,279,341 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0812,957,832 - 12,968,076 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0812,903,224 - 12,913,416 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4811,211,575 - 11,212,957 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera812,763,609 - 12,773,976 (-)NCBICelera
Cytogenetic Map8q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

References

Genomics

Variants

.
Variants in Kdm4dl2
47 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8132882639Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
1 4 12 1 19 5 19 13 1 10 10

Sequence


RefSeq Acc Id: NM_001408803   ⟹   NP_001395732
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8819,551,045 - 19,560,838 (-)NCBI
mRatBN7.2811,269,547 - 11,279,341 (-)NCBI
RefSeq Acc Id: XM_063265958   ⟹   XP_063122028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8819,550,354 - 19,561,106 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001395732 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122028 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001395732   ⟸   NM_001408803
RefSeq Acc Id: XP_063122028   ⟸   XM_063265958
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31693 BioCyc
NCBI Gene 500944 ENTREZGENE
PhenoGen Kdm4dl2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-10-17 Kdm4dl2  lysine (K)-specific demethylase 4D-like 2  Kdm4dl  lysine (K)-specific demethylase 4D-like  Name and Symbol changed 629549 APPROVED
2010-02-12 Kdm4dl  lysine (K)-specific demethylase 4D-like  RGD1563367  similar to jumonji domain containing 2D   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563367  similar to jumonji domain containing 2D   RGD1563367_predicted  similar to jumonji domain containing 2D (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563367_predicted  similar to jumonji domain containing 2D (predicted)  LOC500944  similar to jumonji domain containing 2D  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500944  similar to jumonji domain containing 2D      Symbol and Name status set to provisional 70820 PROVISIONAL