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Gene: Fam53a (family with sequence similarity 53, member A) Rattus norvegicus

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Symbol:

Fam53a

Name:

family with sequence similarity 53, member A

RGD ID:

1563315

Description:

Predicted to be involved in protein import into nucleus. Predicted to be active in nucleus. Orthologous to human FAM53A (family with sequence similarity 53 member A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305461; RGD1563315; similar to RIKEN cDNA 2410018C17

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	81,308,127 - 81,348,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	81,319,375 - 81,348,923 (+)	Ensembl				GRCr8
mRatBN7.2	14	77,088,178 - 77,124,395 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	77,090,723 - 77,124,395 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	81,543,001 - 81,576,776 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	82,783,604 - 82,817,307 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	79,228,909 - 79,262,612 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	82,375,086 - 82,416,004 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,375,181 - 82,416,004 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	83,064,500 - 83,104,049 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	82,786,786 - 82,821,970 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	76,013,768 - 76,047,520 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

chlorpyrifos (EXP,ISO)

chromium(6+) (ISO)

Dibutyl phosphate (ISO)

Diisodecyl phthalate (ISO)

fenthion (ISO)

glyphosate (EXP)

imidacloprid (EXP)

iron dichloride (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

thiabendazole (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triptonide (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Fam53a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	81,308,127 - 81,348,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	81,319,375 - 81,348,923 (+)	Ensembl				GRCr8
mRatBN7.2	14	77,088,178 - 77,124,395 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	77,090,723 - 77,124,395 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	81,543,001 - 81,576,776 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	82,783,604 - 82,817,307 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	79,228,909 - 79,262,612 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	82,375,086 - 82,416,004 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,375,181 - 82,416,004 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	83,064,500 - 83,104,049 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	82,786,786 - 82,821,970 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	76,013,768 - 76,047,520 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

FAM53A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	1,574,062 - 1,686,017 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	1,617,915 - 1,684,313 (-)	Ensembl			hg38	GRCh38
GRCh37	4	1,641,608 - 1,686,040 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	1,611,605 - 1,655,516 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	1,552,616 - 1,597,093 (-)	NCBI		Celera
Cytogenetic Map	4	p16.3	NCBI
HuRef	4	1,584,548 - 1,628,986 (-)	NCBI		HuRef
CHM1_1	4	1,639,557 - 1,683,765 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	1,571,319 - 1,683,894 (-)	NCBI		T2T-CHM13v2.0

Fam53a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	33,757,695 - 33,787,007 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	33,757,691 - 33,786,979 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	33,600,351 - 33,629,675 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	33,600,347 - 33,629,635 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	33,943,002 - 33,972,284 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	33,917,210 - 33,946,212 (-)	NCBI		MGSCv36	mm8
Celera	5	31,076,480 - 31,105,755 (-)	NCBI		Celera
Cytogenetic Map	5	B2	NCBI
cM Map	5	17.83	NCBI

Fam53a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	914,325 - 947,738 (-)	Ensembl
ChiLan1.0	NW_004955514	917,344 - 947,729 (-)	NCBI	ChiLan1.0	ChiLan1.0

FAM53A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	1,965,916 - 2,019,679 (-)	NCBI		NHGRI_mPanPan1-v2
PanPan1.1 Ensembl	4	1,647,466 - 1,722,938 (-)	Ensembl			panPan2	panpan1.1

FAM53A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	62,410,101 - 62,441,189 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	62,424,613 - 62,447,948 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	64,931,915 - 64,965,315 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	62,889,429 - 62,923,018 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	62,898,381 - 62,916,586 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	62,383,129 - 62,416,466 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	62,586,648 - 62,620,024 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	62,945,890 - 62,979,264 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fam53a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	67,980,928 - 68,017,920 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	21,692,283 - 21,719,860 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	21,688,240 - 21,719,612 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM53A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	776,661 - 795,695 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	777,081 - 796,383 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

FAM53A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	47,105,860 - 47,131,400 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	47,089,353 - 47,131,749 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666051	3,465,641 - 3,510,184 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam53a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	25,713,444 - 25,760,911 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624755	25,727,989 - 25,760,774 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fam53a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	71,222,766 - 71,241,237 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fam53a
195 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	233
Count of miRNA genes:	174
Interacting mature miRNAs:	188
Transcripts:	ENSRNOT00000023904
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	38023710	83023710	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	59848686	104848686	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	77640071	96755654	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	77914838	104348525	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39009444	84009444	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	72970210	87582095	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30674469	85041098	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	33424686	102238540	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	74255551	109089856	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	77640071	96755654	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	38023710	83023710	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	62398852	107398852	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	77640071	100078267	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	60854936	105854936	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	74255551	109089856	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	77640071	96755654	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	59848686	104848686	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	77640071	96755654	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	38023710	83023710	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42616258	99224555	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	65920283	99224555	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39411170	87582095	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	38023710	83023710	Rat

Markers in Region

AI448222

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	82,381,683 - 82,381,924	NCBI	Rnor6.0
Rnor_5.0	14	83,069,840 - 83,070,081	UniSTS	Rnor5.0
Cytogenetic Map	14	q21	UniSTS

RH132895

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	77,099,981 - 77,100,167 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	82,391,365 - 82,391,550	NCBI	Rnor6.0
Rnor_5.0	14	83,079,410 - 83,079,595	UniSTS	Rnor5.0
RGSC_v3.4	14	82,797,557 - 82,797,742	UniSTS	RGSC3.4
Celera	14	76,023,107 - 76,023,292	UniSTS
RH 3.4 Map	14	505.68	UniSTS
Cytogenetic Map	14	q21	UniSTS

D12Ertd482e

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	82,381,603 - 82,381,838	NCBI	Rnor6.0
Rnor_5.0	14	83,069,760 - 83,069,995	UniSTS	Rnor5.0
Cytogenetic Map	14	q21	UniSTS

RH134673

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	77,123,982 - 77,124,175 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	82,415,592 - 82,415,784	NCBI	Rnor6.0
Rnor_5.0	14	83,103,637 - 83,103,829	UniSTS	Rnor5.0
RGSC_v3.4	14	82,821,558 - 82,821,750	UniSTS	RGSC3.4
Celera	14	76,047,108 - 76,047,300	UniSTS
Cytogenetic Map	14	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023904 ⟹ ENSRNOP00000023904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	81,319,375 - 81,348,923 (+)	Ensembl
mRatBN7.2 Ensembl	14	77,090,723 - 77,124,395 (+)	Ensembl
Rnor_6.0 Ensembl	14	82,375,181 - 82,416,004 (+)	Ensembl

RefSeq Acc Id:

NM_001107228 ⟹ NP_001100698

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,315,259 - 81,348,930 (+)	NCBI
mRatBN7.2	14	77,090,723 - 77,124,395 (+)	NCBI
Rnor_6.0	14	82,375,181 - 82,416,004 (+)	NCBI
Rnor_5.0	14	83,064,500 - 83,104,049 (+)	NCBI
RGSC_v3.4	14	82,786,786 - 82,821,970 (+)	RGD
Celera	14	76,013,768 - 76,047,520 (+)	RGD

Sequence:

show sequence

GTTGATTGCTTGCGGCGGCTTCCGCGGGCGGGTGCGCGAACGGACGGCTGACGGCTCGGGGCGG
TGGTAGCGGCACAGCGGCCAATGAGGGGATCCGGAGGGGGCGGGGCGTCGGCTGCGGTTTTGTT
CCGCGGTGGCTGAGGCGCACGGTCCCCATGCGCGGAGCGCGGCCTGCGCGGCCGGCGCCTTGCC
CCAGCTACGGAGCCCGGTGCTCACCCGTCGCGCGGACATTGCTCTGTGCCGTCGTTCGCCTGCC
CATCGCTAAGAGCTCCATCCACCGGAACGCCGTGTCCTTGCGCTGTAAGCCCGGAATCTCCGTA
CGTCGGCCGGCGCCGCGCAGCCGCACGTCGAGAGCCGGGTGCATCGCCACAGCGCGCGGAACAC
CCTCTAGGTCCGGCCGGCACCTCAGCACCTTAAGGAAGCAGGAAGTTTGACGAGATATGATGGT
CCCTTAAGAGAATCCCAAGAGCAGATCCTCCCCGACGTCCTGTGGAAGGTGACTTGGAAGTGTA
TTCCGAAGCCACTTTTCTGCGTAGACTGAAGGTGACAAAGCCCTGAAGAGTCTGCAAATGGGTC
AGCATCTTTAAGTCAGAGCTATAACCCTGAGCTTTGGCTCAGACCTGATGGCTTGAGCCTGCTG
ATGTCCAGGCTTCTGGAAATCCAGTGCCCATAGATGTGGACTAAGGAAGAGCCCCGACCATGGT
CACTCTCATCACGGAGAAGCTGCAGAACCAGAGTTTGGATGACCTTACCCGAAGGGCCTGTGAG
GCTGTCCCGTATTCTGCTGAGAAACTGGACAAAAGTGGCCATTTGTTCCCTTTGGAGATTGGCG
TGGATAAAAGTCCCTGGAAGGCCTCACATGGAGGATGGCCCTTTCGAAGCCGGGCAGCCTCAGG
CCCCTTCTCAGTGGGCCCACATGGTGTGTCTCATACCGAAGGTCTCAAGTGGCAGCTGGAATCC
CCAGGGCCCATGGCTGTGGGCCGCTTCCTGGACCTCCGTGAGAGCACAGGGCCACCCGCAGCTC
CACCAACCAAGCGACACTGCCGGTCCCTGTCAGAGCCAGAGGAGCTGGCTCGATGCCGTTCCCC
ATGGCGCCCTGGTAGCTCCAAGGTGTGGACTCCCATCTCTAAGAGGAGATGCAACAGTGGCGGG
AGTGCCACGCTGCAGTGCTGCAGTGGTCTCGGCAACCCTGCACTGCAGGGCAGTCTAGCCCCCG
GCCTACCCAGGAAGCCTGTGTCGCCCACCGGCCCTACCTCACCGATGACGCCCCGGCCAGCTTC
AGCCAGCAGTGGCTTTGTGGATGGCAGTGAGGGCAGTACGAGCTCAGGTCCACCCTGGCTTTCT
ACAGGACCCTGCCCATTTTCCTCCAGGCGCCGACTGTCCCTCTCACAAGAGCACCTTGTAGATG
CAGGTGCCTGCCTGCCTTCCGCCAGCAGCACCCCCACTTCCACACCTGAGCTAGGCCGGCACCA
TGGCCTGCTCCGGTGCCGCTCACAGCCTTGTGTGTTGGATGGGAGGAGGGTTCGGCGCAAGCGG
AGACGGGAGGAGGATGCCAGGTGGACGCGCCCATCCTTGGACTTTCTGAAAATGACTCGGACTT
TAAAAAACTCAAAGAGCCTTTGTTCCCTGGACTATGAAGATGATGAGGATGACACCCAGGCGAA
GACGGTTGTGTCCTCTCCGTGTAACTCGCAGGGCCTCGTGGGCATCATCACTCCCAGCTCTAGC
CCAAGGATTCCCAGGCCTGGCCCTGCCAGCCCCAGTGTCTGGGCTTCAGGGGAGCCAGAGACTA
GCACCGGTGAGGGTGGGAGCAGTGGGGAACCCAGTGACTGGGACAGTGCAGGAGAGGAGGGCAT
TTTCCCGCTGGACCACGGCGACCTGGACTTGGAGCAGATTGAGAACAACTGATTTTGGCTGAGC
AGTGGCTGCTGTCTGTCACCTTGGTGCCTGACCAGTGGAAAGAACTTGTGTGTTATTTTGAAAA
TTGAGGTGTAATTTTGATTCAGTTTTTCCTAAAGAAGTATTTTGCATTTTTATGGCTTCTACAG
TTTGGGAGAGCATCTCTATTTTGAAATGGGTTTTTAGAGGGCATTCTATTAAACATGGTTCTAC
GTACATTCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006251262 ⟹ XP_006251324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI
mRatBN7.2	14	77,088,196 - 77,124,392 (+)	NCBI
Rnor_6.0	14	82,375,086 - 82,416,001 (+)	NCBI
Rnor_5.0	14	83,064,500 - 83,104,049 (+)	NCBI

Sequence:

show sequence

CGTGGAGGGAGTGAGAGGAATGGGAGCGTGCGTCCCGAGGCCACGCCCACAACAAGCCGGGCAG
TGACGTCGCCCGTCTAGCGGCGCGGCTGAGGGTTGATTGCTTGCGGCGGCTTCCGCGGGCGGGT
GCGCGAACGGACGGCTGACGGCTCGGGGCGGTGGTAGCGGCACAGCGGCCAATGAGGGGATCCG
GAGGGGGCGGGGCGTCGGCTGCGGTTTTGTTCCGCGGTGGCTGAGGCGCACGGTCCCCATGCGC
GGAGCGCGGCCTGCGCGGCCGGCGCCTTGCCCCAGCTACGGAGCCCGGTGCTCACCCGTCGCGC
GGACATTGCTCTGTGCCGTCGTTCGCCTGCCCATCGCTAAGAGCTCCATCCACCGGAACGCCGT
GTCCTTGCGCTGTAAGCCCGGAATCTCCGTACGTCGGCCGGCGCCGCGCAGCCGCACGTCGAGA
GCCGGGTGCATCGCCACAGCGCGCGGAACACCCTCTAGGAAGCAGGAAGTTTGACGAGATATGA
TGGTCCCTTAAGAGAATCCCAAGAGCAGATCCTCCCCGACGTCCTGTGGAAGGTGACTTGGAAG
TGTATTCCGAAGCCACTTTTCTGCGTAGACTGAAGGTGACAAAGCCCTGAAGAGTCTGCAAATG
GGTCAGCATCTTTAAGTCAGAGCTATAACCCTGAGCTTTGGCTCAGACCTGATGGCTTGAGCCT
GCTGATGTCCAGGCTTCTGGAAATCCAGTGCCCATAGATGTGGACTAAGGAAGAGCCCCGACCA
TGGTCACTCTCATCACGGAGAAGCTGCAGAACCAGAGTTTGGATGACCTTACCCGAAGGGCCTG
TGAGGCTGTCCCGTATTCTGCTGAGAAACTGGACAAAAGTGGCCATTTGTTCCCTTTGGAGATT
GGCGTGGATAAAAGTCCCTGGAAGGCCTCACATGGAGGATGGCCCTTTCGAAGCCGGGCAGCCT
CAGGCCCCTTCTCAGTGGGCCCACATGGTGTGTCTCATACCGAAGGTCTCAAGTGGCAGCTGGA
ATCCCCAGGGCCCATGGCTGTGGGCCGCTTCCTGGACCTCCGTGAGAGCACAGGGCCACCCGCA
GCTCCACCAACCAAGCGACACTGCCGGTCCCTGTCAGAGCCAGAGGAGCTGGCTCGATGCCGTT
CCCCATGGCGCCCTGGTAGCTCCAAGGTGTGGACTCCCATCTCTAAGAGGAGATGCAACAGTGG
CGGGAGTGCCACGCTGCAGTGCTGCAGTGGTCTCGGCAACCCTGCACTGCAGGGCAGTCTAGCC
CCCGGCCTACCCAGGAAGCCTGTGTCGCCCACCGGCCCTACCTCACCGATGACGCCCCGGCCAG
CTTCAGCCAGCAGTGGCTTTGTGGATGGCAGTGAGGGCAGTACGAGCTCAGGTCCACCCTGGCT
TTCTACAGGACCCTGCCCATTTTCCTCCAGGCGCCGACTGTCCCTCTCACAAGAGCACCTTGTA
GATGCAGGTGCCTGCCTGCCTTCCGCCAGCAGCACCCCCACTTCCACACCTGAGCTAGGCCGGC
ACCATGGCCTGCTCCGGTGCCGCTCACAGCCTTGTGTGTTGGATGGGAGGAGGGTTCGGCGCAA
GCGGAGACGGGAGGAGGATGCCAGGTGGACGCGCCCATCCTTGGACTTTCTGAAAATGACTCGG
ACTTTAAAAAACTCAAAGAGCCTTTGTTCCCTGGACTATGAAGATGATGAGGATGACACCCAGG
CGAAGACGGTTGTGTCCTCTCCGTGTAACTCGCAGGGCCTCGTGGGCATCATCACTCCCAGCTC
TAGCCCAAGGATTCCCAGGCCTGGCCCTGCCAGCCCCAGTGTCTGGGCTTCAGGGGAGCCAGAG
ACTAGCACCGGTGAGGGTGGGAGCAGTGGGGAACCCAGTGACTGGGACAGTGCAGGAGAGGAGG
GCATTTTCCCGCTGGACCACGGCGACCTGGACTTGGAGCAGATTGAGAACAACTGATTTTGGCT
GAGCAGTGGCTGCTGTCTGTCACCTTGGTGCCTGACCAGTGGAAAGAACTTGTGTGTTATTTTG
AAAATTGAGGTGTAATTTTGATTCAGTTTTTCCTAAAGAAGTATTTTGCATTTTTATGGCTTCT
ACAGTTTGGGAGAGCATCTCTATTTTGAAATGGGTTTTTAGAGGGCATTCTATTAAACATGGTT
CTACGTACA

hide sequence

RefSeq Acc Id:

XM_006251266 ⟹ XP_006251328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI
mRatBN7.2	14	77,088,196 - 77,124,392 (+)	NCBI
Rnor_6.0	14	82,375,086 - 82,416,001 (+)	NCBI
Rnor_5.0	14	83,064,500 - 83,104,049 (+)	NCBI

Sequence:

show sequence

CGTGGAGGGAGTGAGAGGAATGGGAGCGTGCGTCCCGAGGCCACGCCCACAACAAGCCGGGCAG
TGACGTCGCCCGTCTAGCGGCGCGGCTGAGGGTTGATTGCTTGCGGCGGCTTCCGCGGGCGGGT
GCGCGAACGGACGGCTGACGGCTCGGGGCGGTGGTAGCGGCACAGCGGCCAATGAGGGGATCCG
GAGGGGGCGGGGCGTCGGCTGCGGTTTTGTTCCGCGGTGGCTGAGGCGCACGGTCCCCATGCGC
GGAGCGCGGCCTGCGCGGCCGGCGCCTTGCCCCAGCTACGGAGCCCGGTGCTCACCCGTCGCGC
GGACATTGCTCTGTGCCGTCGTTCGCCTGCCCATCGCTAAGAGCTCCATCCACCGGAACGCCGT
GTCCTTGCGCTGTAAGCCCGGAATCTCCGTACGTCGGCCGGCGCCGCGCAGCCGCACGTCGAGA
GCCGGGTGCATCGCCACAGCGCGCGGAACACCCTCTAGGTCCGGCCGGCACCTCAGCACCTTAA
GTGACAAAGCCCTGAAGAGTCTGCAAATGGGTCAGCATCTTTAAGTCAGAGCTATAACCCTGAG
CTTTGGCTCAGACCTGATGGCTTGAGCCTGCTGATGTCCAGGCTTCTGGAAATCCAGTGCCCAT
AGATGTGGACTAAGGAAGAGCCCCGACCATGGTCACTCTCATCACGGAGAAGCTGCAGAACCAG
AGTTTGGATGACCTTACCCGAAGGGCCTGTGAGGCTGTCCCGTATTCTGCTGAGAAACTGGACA
AAAGTGGCCATTTGTTCCCTTTGGAGATTGGCGTGGATAAAAGTCCCTGGAAGGCCTCACATGG
AGGATGGCCCTTTCGAAGCCGGGCAGCCTCAGGCCCCTTCTCAGTGGGCCCACATGGTGTGTCT
CATACCGAAGGTCTCAAGTGGCAGCTGGAATCCCCAGGGCCCATGGCTGTGGGCCGCTTCCTGG
ACCTCCGTGAGAGCACAGGGCCACCCGCAGCTCCACCAACCAAGCGACACTGCCGGTCCCTGTC
AGAGCCAGAGGAGCTGGCTCGATGCCGTTCCCCATGGCGCCCTGGTAGCTCCAAGGTGTGGACT
CCCATCTCTAAGAGGAGATGCAACAGTGGCGGGAGTGCCACGCTGCAGTGCTGCAGTGGTCTCG
GCAACCCTGCACTGCAGGGCAGTCTAGCCCCCGGCCTACCCAGGAAGCCTGTGTCGCCCACCGG
CCCTACCTCACCGATGACGCCCCGGCCAGCTTCAGCCAGCAGTGGCTTTGTGGATGGCAGTGAG
GGCAGTACGAGCTCAGGTCCACCCTGGCTTTCTACAGGACCCTGCCCATTTTCCTCCAGGCGCC
GACTGTCCCTCTCACAAGAGCACCTTGTAGATGCAGGTGCCTGCCTGCCTTCCGCCAGCAGCAC
CCCCACTTCCACACCTGAGCTAGGCCGGCACCATGGCCTGCTCCGGTGCCGCTCACAGCCTTGT
GTGTTGGATGGGAGGAGGGTTCGGCGCAAGCGGAGACGGGAGGAGGATGCCAGGTGGACGCGCC
CATCCTTGGACTTTCTGAAAATGACTCGGACTTTAAAAAACTCAAAGAGCCTTTGTTCCCTGGA
CTATGAAGATGATGAGGATGACACCCAGGCGAAGACGGTTGTGTCCTCTCCGTGTAACTCGCAG
GGCCTCGTGGGCATCATCACTCCCAGCTCTAGCCCAAGGATTCCCAGGCCTGGCCCTGCCAGCC
CCAGTGTCTGGGCTTCAGGGGAGCCAGAGACTAGCACCGGTGAGGGTGGGAGCAGTGGGGAACC
CAGTGACTGGGACAGTGCAGGAGAGGAGGGCATTTTCCCGCTGGACCACGGCGACCTGGACTTG
GAGCAGATTGAGAACAACTGATTTTGGCTGAGCAGTGGCTGCTGTCTGTCACCTTGGTGCCTGA
CCAGTGGAAAGAACTTGTGTGTTATTTTGAAAATTGAGGTGTAATTTTGATTCAGTTTTTCCTA
AAGAAGTATTTTGCATTTTTATGGCTTCTACAGTTTGGGAGAGCATCTCTATTTTGAAATGGGT
TTTTAGAGGGCATTCTATTAAACATGGTTCTACGTACA

hide sequence

RefSeq Acc Id:

XM_006251268 ⟹ XP_006251330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI
mRatBN7.2	14	77,088,196 - 77,124,392 (+)	NCBI
Rnor_6.0	14	82,375,086 - 82,416,001 (+)	NCBI
Rnor_5.0	14	83,064,500 - 83,104,049 (+)	NCBI

Sequence:

show sequence

CGTGGAGGGAGTGAGAGGAATGGGAGCGTGCGTCCCGAGGCCACGCCCACAACAAGCCGGGCAG
TGACGTCGCCCGTCTAGCGGCGCGGCTGAGGGTTGATTGCTTGCGGCGGCTTCCGCGGGCGGGT
GCGCGAACGGACGGCTGACGGCTCGGGGCGGTGGTAGCGGCACAGCGGCCAATGAGGGGATCCG
GAGGGGGCGGGGCGTCGGCTGCGGTTTTGTTCCGCGGTGGCTGAGGCGCACGGTCCCCATGCGC
GGAGCGCGGCCTGCGCGGCCGGCGCCTTGCCCCAGCTACGGAGCCCGGTGCTCACCCGTCGCGC
GGACATTGCTCTGTGCCGTCGTTCGCCTGCCCATCGCTAAGAGCTCCATCCACCGGAACGCCGT
GTCCTTGCGCTGTAAGCCCGGAATCTCCGTACGTCGGCCGGCGCCGCGCAGCCGCACGTCGAGA
GCCGGGTGCATCGCCACAGCGCGCGGAACACCCTCTAGTGACAAAGCCCTGAAGAGTCTGCAAA
TGGGTCAGCATCTTTAAGTCAGAGCTATAACCCTGAGCTTTGGCTCAGACCTGATGGCTTGAGC
CTGCTGATGTCCAGGCTTCTGGAAATCCAGTGCCCATAGATGTGGACTAAGGAAGAGCCCCGAC
CATGGTCACTCTCATCACGGAGAAGCTGCAGAACCAGAGTTTGGATGACCTTACCCGAAGGGCC
TGTGAGGCTGTCCCGTATTCTGCTGAGAAACTGGACAAAAGTGGCCATTTGTTCCCTTTGGAGA
TTGGCGTGGATAAAAGTCCCTGGAAGGCCTCACATGGAGGATGGCCCTTTCGAAGCCGGGCAGC
CTCAGGCCCCTTCTCAGTGGGCCCACATGGTGTGTCTCATACCGAAGGTCTCAAGTGGCAGCTG
GAATCCCCAGGGCCCATGGCTGTGGGCCGCTTCCTGGACCTCCGTGAGAGCACAGGGCCACCCG
CAGCTCCACCAACCAAGCGACACTGCCGGTCCCTGTCAGAGCCAGAGGAGCTGGCTCGATGCCG
TTCCCCATGGCGCCCTGGTAGCTCCAAGGTGTGGACTCCCATCTCTAAGAGGAGATGCAACAGT
GGCGGGAGTGCCACGCTGCAGTGCTGCAGTGGTCTCGGCAACCCTGCACTGCAGGGCAGTCTAG
CCCCCGGCCTACCCAGGAAGCCTGTGTCGCCCACCGGCCCTACCTCACCGATGACGCCCCGGCC
AGCTTCAGCCAGCAGTGGCTTTGTGGATGGCAGTGAGGGCAGTACGAGCTCAGGTCCACCCTGG
CTTTCTACAGGACCCTGCCCATTTTCCTCCAGGCGCCGACTGTCCCTCTCACAAGAGCACCTTG
TAGATGCAGGTGCCTGCCTGCCTTCCGCCAGCAGCACCCCCACTTCCACACCTGAGCTAGGCCG
GCACCATGGCCTGCTCCGGTGCCGCTCACAGCCTTGTGTGTTGGATGGGAGGAGGGTTCGGCGC
AAGCGGAGACGGGAGGAGGATGCCAGGTGGACGCGCCCATCCTTGGACTTTCTGAAAATGACTC
GGACTTTAAAAAACTCAAAGAGCCTTTGTTCCCTGGACTATGAAGATGATGAGGATGACACCCA
GGCGAAGACGGTTGTGTCCTCTCCGTGTAACTCGCAGGGCCTCGTGGGCATCATCACTCCCAGC
TCTAGCCCAAGGATTCCCAGGCCTGGCCCTGCCAGCCCCAGTGTCTGGGCTTCAGGGGAGCCAG
AGACTAGCACCGGTGAGGGTGGGAGCAGTGGGGAACCCAGTGACTGGGACAGTGCAGGAGAGGA
GGGCATTTTCCCGCTGGACCACGGCGACCTGGACTTGGAGCAGATTGAGAACAACTGATTTTGG
CTGAGCAGTGGCTGCTGTCTGTCACCTTGGTGCCTGACCAGTGGAAAGAACTTGTGTGTTATTT
TGAAAATTGAGGTGTAATTTTGATTCAGTTTTTCCTAAAGAAGTATTTTGCATTTTTATGGCTT
CTACAGTTTGGGAGAGCATCTCTATTTTGAAATGGGTTTTTAGAGGGCATTCTATTAAACATGG
TTCTACGTACA

hide sequence

RefSeq Acc Id:

XM_039091982 ⟹ XP_038947910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI
mRatBN7.2	14	77,088,196 - 77,124,392 (+)	NCBI

RefSeq Acc Id:

XM_039091983 ⟹ XP_038947911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI
mRatBN7.2	14	77,088,196 - 77,124,392 (+)	NCBI

RefSeq Acc Id:

XM_039091984 ⟹ XP_038947912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI
mRatBN7.2	14	77,088,178 - 77,121,729 (+)	NCBI

RefSeq Acc Id:

XM_063273155 ⟹ XP_063129225

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI

RefSeq Acc Id:

XM_063273156 ⟹ XP_063129226

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI

RefSeq Acc Id:

XM_063273157 ⟹ XP_063129227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI

RefSeq Acc Id:

XM_063273159 ⟹ XP_063129229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI

RefSeq Acc Id:

XM_063273160 ⟹ XP_063129230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI

RefSeq Acc Id:

XM_063273161 ⟹ XP_063129231

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI

RefSeq Acc Id:

XM_063273162 ⟹ XP_063129232

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI

RefSeq Acc Id:

XM_063273163 ⟹ XP_063129233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,348,925 (+)	NCBI

RefSeq Acc Id:

XM_063273164 ⟹ XP_063129234

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,308,127 - 81,341,037 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100698	(Get FASTA)	NCBI Sequence Viewer
	NP_001423822	(Get FASTA)	NCBI Sequence Viewer
	XP_006251324	(Get FASTA)	NCBI Sequence Viewer
	XP_006251328	(Get FASTA)	NCBI Sequence Viewer
	XP_006251330	(Get FASTA)	NCBI Sequence Viewer
	XP_038947910	(Get FASTA)	NCBI Sequence Viewer
	XP_038947911	(Get FASTA)	NCBI Sequence Viewer
	XP_038947912	(Get FASTA)	NCBI Sequence Viewer
	XP_063129225	(Get FASTA)	NCBI Sequence Viewer
	XP_063129226	(Get FASTA)	NCBI Sequence Viewer
	XP_063129227	(Get FASTA)	NCBI Sequence Viewer
	XP_063129229	(Get FASTA)	NCBI Sequence Viewer
	XP_063129230	(Get FASTA)	NCBI Sequence Viewer
	XP_063129231	(Get FASTA)	NCBI Sequence Viewer
	XP_063129232	(Get FASTA)	NCBI Sequence Viewer
	XP_063129233	(Get FASTA)	NCBI Sequence Viewer
	XP_063129234	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68895	(Get FASTA)	NCBI Sequence Viewer
	EDM00125	(Get FASTA)	NCBI Sequence Viewer
	EDM00126	(Get FASTA)	NCBI Sequence Viewer
	EDM00127	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023904
	ENSRNOP00000023904.4

RefSeq Acc Id:

NP_001100698 ⟸ NM_001107228

- UniProtKB:

B5DF22 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), A6IK61 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVTLITEKLQNQSLDDLTRRACEAVPYSAEKLDKSGHLFPLEIGVDKSPWKASHGGWPFRSRAA
SGPFSVGPHGVSHTEGLKWQLESPGPMAVGRFLDLRESTGPPAAPPTKRHCRSLSEPEELARCR
SPWRPGSSKVWTPISKRRCNSGGSATLQCCSGLGNPALQGSLAPGLPRKPVSPTGPTSPMTPRP
ASASSGFVDGSEGSTSSGPPWLSTGPCPFSSRRRLSLSQEHLVDAGACLPSASSTPTSTPELGR
HHGLLRCRSQPCVLDGRRVRRKRRREEDARWTRPSLDFLKMTRTLKNSKSLCSLDYEDDEDDTQ
AKTVVSSPCNSQGLVGIITPSSSPRIPRPGPASPSVWASGEPETSTGEGGSSGEPSDWDSAGEE
GIFPLDHGDLDLEQIENN

hide sequence

RefSeq Acc Id:	XP_006251328 ⟸ XM_006251266
- Peptide Label:	isoform X1
- UniProtKB:	B5DF22 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), A6IK61 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVTLITEKLQNQSLDDLTRRACEAVPYSAEKLDKSGHLFPLEIGVDKSPWKASHGGWPFRSRAA SGPFSVGPHGVSHTEGLKWQLESPGPMAVGRFLDLRESTGPPAAPPTKRHCRSLSEPEELARCR SPWRPGSSKVWTPISKRRCNSGGSATLQCCSGLGNPALQGSLAPGLPRKPVSPTGPTSPMTPRP ASASSGFVDGSEGSTSSGPPWLSTGPCPFSSRRRLSLSQEHLVDAGACLPSASSTPTSTPELGR HHGLLRCRSQPCVLDGRRVRRKRRREEDARWTRPSLDFLKMTRTLKNSKSLCSLDYEDDEDDTQ AKTVVSSPCNSQGLVGIITPSSSPRIPRPGPASPSVWASGEPETSTGEGGSSGEPSDWDSAGEE GIFPLDHGDLDLEQIENN hide sequence

RefSeq Acc Id:

XP_006251324 ⟸ XM_006251262

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVTLITEKLQNQSLDDLTRRACEAVPYSAEKLDKSGHLFPLEIGVDKSPWKASHGGWPFRSRAA
SGPFSVGPHGVSHTEGLKWQLESPGPMAVGRFLDLRESTGPPAAPPTKRHCRSLSEPEELARCR
SPWRPGSSKVWTPISKRRCNSGGSATLQCCSGLGNPALQGSLAPGLPRKPVSPTGPTSPMTPRP
ASASSGFVDGSEGSTSSGPPWLSTGPCPFSSRRRLSLSQEHLVDAGACLPSASSTPTSTPELGR
HHGLLRCRSQPCVLDGRRVRRKRRREEDARWTRPSLDFLKMTRTLKNSKSLCSLDYEDDEDDTQ
AKTVVSSPCNSQGLVGIITPSSSPRIPRPGPASPSVWASGEPETSTGEGGSSGEPSDWDSAGEE
GIFPLDHGDLDLEQIENN

hide sequence

RefSeq Acc Id:	XP_006251330 ⟸ XM_006251268
- Peptide Label:	isoform X1
- UniProtKB:	B5DF22 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), A6IK61 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVTLITEKLQNQSLDDLTRRACEAVPYSAEKLDKSGHLFPLEIGVDKSPWKASHGGWPFRSRAA SGPFSVGPHGVSHTEGLKWQLESPGPMAVGRFLDLRESTGPPAAPPTKRHCRSLSEPEELARCR SPWRPGSSKVWTPISKRRCNSGGSATLQCCSGLGNPALQGSLAPGLPRKPVSPTGPTSPMTPRP ASASSGFVDGSEGSTSSGPPWLSTGPCPFSSRRRLSLSQEHLVDAGACLPSASSTPTSTPELGR HHGLLRCRSQPCVLDGRRVRRKRRREEDARWTRPSLDFLKMTRTLKNSKSLCSLDYEDDEDDTQ AKTVVSSPCNSQGLVGIITPSSSPRIPRPGPASPSVWASGEPETSTGEGGSSGEPSDWDSAGEE GIFPLDHGDLDLEQIENN hide sequence

Ensembl Acc Id:

ENSRNOP00000023904 ⟸ ENSRNOT00000023904

RefSeq Acc Id:	XP_038947912 ⟸ XM_039091984
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038947911 ⟸ XM_039091983
- Peptide Label:	isoform X1
- UniProtKB:	B5DF22 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), A6IK61 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947910 ⟸ XM_039091982
- Peptide Label:	isoform X1
- UniProtKB:	B5DF22 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), A6IK61 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129231 ⟸ XM_063273161
- Peptide Label:	isoform X1
- UniProtKB:	A6IK61 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), B5DF22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129226 ⟸ XM_063273156
- Peptide Label:	isoform X1
- UniProtKB:	A6IK61 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), B5DF22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129227 ⟸ XM_063273157
- Peptide Label:	isoform X1
- UniProtKB:	A6IK61 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), B5DF22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129225 ⟸ XM_063273155
- Peptide Label:	isoform X1
- UniProtKB:	A6IK61 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), B5DF22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129232 ⟸ XM_063273162
- Peptide Label:	isoform X1
- UniProtKB:	A6IK61 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), B5DF22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129230 ⟸ XM_063273160
- Peptide Label:	isoform X1
- UniProtKB:	A6IK61 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), B5DF22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129229 ⟸ XM_063273159
- Peptide Label:	isoform X1
- UniProtKB:	A6IK61 (UniProtKB/TrEMBL), A6IK62 (UniProtKB/TrEMBL), B5DF22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129233 ⟸ XM_063273163
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063129234 ⟸ XM_063273164
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DF22-F1-model_v2	AlphaFold	B5DF22	1-402	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699411

Promoter ID:

EPDNEW_R9936

Type:

initiation region

Name:

Fam53a_1

Description:

family with sequence similarity 53, member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	82,375,336 - 82,375,396	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563315	AgrOrtholog
BioCyc Gene	G2FUF-15259	BioCyc
Ensembl Genes	ENSRNOG00000017548	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023904	ENTREZGENE
	ENSRNOT00000023904.7	UniProtKB/TrEMBL
InterPro	FAM53	UniProtKB/TrEMBL
KEGG Report	rno:305461	UniProtKB/TrEMBL
NCBI Gene	305461	ENTREZGENE
PANTHER	PROTEIN FAM53A	UniProtKB/TrEMBL
	PTHR28567	UniProtKB/TrEMBL
Pfam	FAM53	UniProtKB/TrEMBL
PhenoGen	Fam53a	PhenoGen
RatGTEx	ENSRNOG00000017548	RatGTEx
UniProt	A6IK61	ENTREZGENE, UniProtKB/TrEMBL
	A6IK62	ENTREZGENE, UniProtKB/TrEMBL
	B5DF22	ENTREZGENE
UniProt Secondary	B5DF22	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Fam53a	family with sequence similarity 53, member A	RGD1563315_predicted	similar to RIKEN cDNA 2410018C17 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1563315_predicted	similar to RIKEN cDNA 2410018C17 (predicted)	LOC305461	similar to RIKEN cDNA 2410018C17	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC305461	similar to RIKEN cDNA 2410018C17			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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