Frey1 (Frey regulator of sperm-oocyte fusion 1) - Rat Genome Database

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Gene: Frey1 (Frey regulator of sperm-oocyte fusion 1) Rattus norvegicus
Analyze
Symbol: Frey1
Name: Frey regulator of sperm-oocyte fusion 1
RGD ID: 1563263
Description: Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in several processes, including fusion of sperm to egg plasma membrane involved in single fertilization; maintenance of protein localization in endoplasmic reticulum; and sperm-egg recognition. Predicted to act upstream of or within several processes, including protein N-linked glycosylation; protein localization involved in acrosome reaction; and protein stabilization. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human FREY1 (Frey regulator of sperm-oocyte fusion 1); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC499836; LOC499836; RGD1563263; similar to RIKEN cDNA 1700029I15; uncharacterized protein C11orf94 homolog; uncharacterized protein LOC499836
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8398,809,792 - 98,810,544 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl398,809,792 - 98,810,544 (+)EnsemblGRCr8
mRatBN7.2378,354,303 - 78,355,055 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl378,354,303 - 78,355,055 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx381,830,082 - 81,830,834 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0390,429,123 - 90,429,875 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0388,280,218 - 88,280,970 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0381,294,275 - 81,295,027 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl381,294,275 - 81,295,027 (+)Ensemblrn6Rnor6.0
Rnor_5.0387,997,743 - 87,998,495 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4376,780,756 - 76,781,508 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera377,556,298 - 77,557,050 (+)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
endoplasmic reticulum membrane  (IBA,IEA,ISO)
membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Frey1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8398,809,792 - 98,810,544 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl398,809,792 - 98,810,544 (+)EnsemblGRCr8
mRatBN7.2378,354,303 - 78,355,055 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl378,354,303 - 78,355,055 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx381,830,082 - 81,830,834 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0390,429,123 - 90,429,875 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0388,280,218 - 88,280,970 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0381,294,275 - 81,295,027 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl381,294,275 - 81,295,027 (+)Ensemblrn6Rnor6.0
Rnor_5.0387,997,743 - 87,998,495 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4376,780,756 - 76,781,508 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera377,556,298 - 77,557,050 (+)NCBICelera
Cytogenetic Map3q24NCBI
FREY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,906,534 - 45,907,271 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,906,513 - 45,907,272 (-)Ensemblhg38GRCh38
GRCh371145,928,085 - 45,928,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361145,884,661 - 45,885,409 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1146,075,690 - 46,076,438 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1145,634,937 - 45,635,685 (-)NCBIHuRef
CHM1_11145,925,505 - 45,926,253 (-)NCBICHM1_1
T2T-CHM13v2.01146,062,464 - 46,063,201 (-)NCBIT2T-CHM13v2.0
Frey1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39292,213,263 - 92,213,948 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl292,212,883 - 92,216,053 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38292,382,918 - 92,383,603 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl292,382,538 - 92,385,708 (+)Ensemblmm10GRCm38
MGSCv37292,223,075 - 92,223,760 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36292,183,757 - 92,184,440 (+)NCBIMGSCv36mm8
Celera293,776,046 - 93,776,731 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.99NCBI
Frey1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554222,063,253 - 2,063,942 (+)NCBIChiLan1.0ChiLan1.0
FREY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2948,114,985 - 48,118,008 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,121,861 - 48,124,876 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01145,860,688 - 45,863,703 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,352,806 - 46,353,867 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,352,806 - 46,353,867 (-)EnsemblpanPan2panpan1.1
FREY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11843,516,326 - 43,517,103 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1843,516,377 - 43,517,068 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1842,243,631 - 42,245,135 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01844,171,569 - 44,173,073 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1844,172,347 - 44,173,038 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11843,655,821 - 43,657,325 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01843,208,770 - 43,210,274 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01843,941,058 - 43,942,562 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Frey1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494721,000,517 - 21,001,502 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365623,112,483 - 3,113,142 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365623,109,979 - 3,113,144 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FREY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl216,563,120 - 16,565,668 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1216,563,319 - 16,564,181 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2217,949,591 - 17,952,409 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FREY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1119,434,555 - 19,435,520 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl119,434,827 - 19,435,486 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038116,709,456 - 116,712,376 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Frey1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247672,602,411 - 2,603,399 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247672,602,665 - 2,603,489 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Frey1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1566,521,120 - 66,521,885 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:48
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000009068
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
RH135410  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2378,355,089 - 78,355,301 (+)MAPPERmRatBN7.2
Rnor_6.0381,295,062 - 81,295,273NCBIRnor6.0
Rnor_5.0387,998,530 - 87,998,741UniSTSRnor5.0
RGSC_v3.4376,781,543 - 76,781,754UniSTSRGSC3.4
Celera377,557,085 - 77,557,296UniSTS
RH 3.4 Map3707.2UniSTS
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
8 9 17 78 72 70 41 28 41 6 166 63 59 46 50 29 6 6

Sequence


Ensembl Acc Id: ENSRNOT00000009068   ⟹   ENSRNOP00000009068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl398,809,792 - 98,810,544 (+)Ensembl
mRatBN7.2 Ensembl378,354,303 - 78,355,055 (+)Ensembl
Rnor_6.0 Ensembl381,294,275 - 81,295,027 (+)Ensembl
RefSeq Acc Id: NM_001109201   ⟹   NP_001102671
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,809,792 - 98,810,544 (+)NCBI
mRatBN7.2378,354,303 - 78,355,055 (+)NCBI
Rnor_6.0381,294,275 - 81,295,027 (+)NCBI
Rnor_5.0387,997,743 - 87,998,495 (+)NCBI
RGSC_v3.4376,780,756 - 76,781,508 (+)RGD
Celera377,556,298 - 77,557,050 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102671 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAJ09920 (Get FASTA)   NCBI Sequence Viewer  
  CAL68856 (Get FASTA)   NCBI Sequence Viewer  
  EDL79568 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009068
  ENSRNOP00000009068.5
RefSeq Acc Id: NP_001102671   ⟸   NM_001109201
- UniProtKB: D4A7F4 (UniProtKB/TrEMBL),   A6HNG7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009068   ⟸   ENSRNOT00000009068

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7F4-F1-model_v2 AlphaFold D4A7F4 1-100 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692223
Promoter ID:EPDNEW_R2748
Type:initiation region
Name:RGD1563263_1
Description:similar to RIKEN cDNA 1700029I15
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0381,294,277 - 81,294,337EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563263 AgrOrtholog
BioCyc Gene G2FUF-48700 BioCyc
Ensembl Genes ENSRNOG00000006884 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009068 ENTREZGENE
  ENSRNOT00000009068.7 UniProtKB/TrEMBL
InterPro DUF4733 UniProtKB/TrEMBL
KEGG Report rno:499836 UniProtKB/TrEMBL
NCBI Gene 499836 ENTREZGENE
PANTHER PTHR37872 UniProtKB/TrEMBL
  SIMILAR TO RIKEN CDNA 1700029I15 UniProtKB/TrEMBL
Pfam DUF4733 UniProtKB/TrEMBL
PhenoGen Frey1 PhenoGen
RatGTEx ENSRNOG00000006884 RatGTEx
UniProt A6HNG7 ENTREZGENE, UniProtKB/TrEMBL
  D4A7F4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-30 Frey1  Frey regulator of sperm-oocyte fusion 1  RGD1563263  similar to RIKEN cDNA 1700029I15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563263  similar to RIKEN cDNA 1700029I15   RGD1563263_predicted  similar to RIKEN cDNA 1700029I15 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563263_predicted  similar to RIKEN cDNA 1700029I15 (predicted)  LOC499836  similar to RIKEN cDNA 1700029I15  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499836  similar to RIKEN cDNA 1700029I15      Symbol and Name status set to provisional 70820 PROVISIONAL