Nwd2 (NACHT and WD repeat domain containing 2) - Rat Genome Database

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Gene: Nwd2 (NACHT and WD repeat domain containing 2) Rattus norvegicus
Analyze
Symbol: Nwd2
Name: NACHT and WD repeat domain containing 2
RGD ID: 1563065
Description: Predicted to be active in synapse. Orthologous to human NWD2 (NACHT and WD repeat domain containing 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC103694210; LOC289633; NACHT and WD repeat domain-containing protein 2; NACHT and WD repeat domain-containing protein 2-like; RGD1563065; similar to 3110047P20Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81444,833,623 - 45,024,962 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1444,834,856 - 45,024,047 (-)EnsemblGRCr8
mRatBN7.21444,480,049 - 44,671,417 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1444,482,287 - 44,670,299 (-)EnsemblmRatBN7.2
Rnor_6.01446,136,780 - 46,153,320 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1446,136,786 - 46,153,212 (-)Ensemblrn6Rnor6.0
Rnor_5.01445,936,735 - 46,351,522 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41446,978,996 - 47,036,123 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1443,620,272 - 43,814,434 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
synapse  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Nwd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81444,833,623 - 45,024,962 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1444,834,856 - 45,024,047 (-)EnsemblGRCr8
mRatBN7.21444,480,049 - 44,671,417 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1444,482,287 - 44,670,299 (-)EnsemblmRatBN7.2
Rnor_6.01446,136,780 - 46,153,320 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1446,136,786 - 46,153,212 (-)Ensemblrn6Rnor6.0
Rnor_5.01445,936,735 - 46,351,522 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41446,978,996 - 47,036,123 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1443,620,272 - 43,814,434 (-)NCBICelera
Cytogenetic Map14p11NCBI
NWD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38437,244,743 - 37,449,463 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl437,244,743 - 37,449,463 (+)Ensemblhg38GRCh38
GRCh37437,246,365 - 37,451,085 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36436,923,085 - 37,127,482 (+)NCBIBuild 36Build 36hg18NCBI36
Celera437,686,844 - 37,890,948 (+)NCBICelera
Cytogenetic Map4p14NCBI
HuRef436,570,542 - 36,774,793 (+)NCBIHuRef
CHM1_1437,245,806 - 37,450,211 (+)NCBICHM1_1
T2T-CHM13v2.0437,213,081 - 37,418,202 (+)NCBIT2T-CHM13v2.0
Nwd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39563,806,446 - 63,967,889 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl563,806,445 - 63,967,889 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38563,649,103 - 63,810,546 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl563,649,102 - 63,810,546 (+)Ensemblmm10GRCm38
MGSCv37564,040,342 - 64,201,785 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36563,927,566 - 64,089,681 (+)NCBIMGSCv36mm8
Celera560,947,456 - 61,108,748 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map532.8NCBI
Nwd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554439,631,645 - 9,783,162 (-)Ensembl
ChiLan1.0NW_0049554439,631,652 - 9,783,162 (-)NCBIChiLan1.0ChiLan1.0
NWD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2337,434,479 - 37,638,566 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1437,623,499 - 37,829,979 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0431,573,590 - 31,777,648 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1437,431,111 - 37,634,502 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl437,431,111 - 37,634,502 (+)EnsemblpanPan2panpan1.1
NWD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1374,660,084 - 74,835,368 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl374,662,402 - 74,835,851 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha377,207,294 - 77,381,918 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0375,441,143 - 75,616,088 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl375,443,395 - 75,616,799 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1374,707,096 - 74,881,550 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0374,854,506 - 75,028,991 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0375,232,441 - 75,407,212 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nwd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528540,782,677 - 40,933,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364825,366,245 - 5,515,559 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364825,361,766 - 5,515,558 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NWD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl828,801,568 - 29,009,163 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1828,799,702 - 29,009,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2830,210,603 - 30,425,073 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NWD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12712,825,458 - 13,028,211 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604759,258,670 - 59,474,243 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nwd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248405,802,886 - 5,984,767 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248405,802,869 - 5,985,719 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Nwd2
1545 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143123808072970315Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142252151767521517Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141889519263895192Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141790672654251504Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
RH130991  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21842,816,909 - 42,817,129 (+)MAPPERmRatBN7.2
Rnor_6.01843,857,605 - 43,857,824NCBIRnor6.0
Rnor_5.01446,071,888 - 46,072,107UniSTSRnor5.0
RGSC_v3.41844,628,443 - 44,628,662UniSTSRGSC3.4
Celera1841,045,400 - 41,045,619UniSTS
Cytogenetic Map18q11UniSTS
Cytogenetic Map14p11UniSTS
MHAa7b3.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21842,882,999 - 42,883,188 (+)MAPPERmRatBN7.2
Rnor_6.01843,926,611 - 43,926,799NCBIRnor6.0
Rnor_5.01446,138,206 - 46,138,394UniSTSRnor5.0
RGSC_v3.41844,699,171 - 44,699,359UniSTSRGSC3.4
Celera1841,111,725 - 41,111,913UniSTS
Cytogenetic Map18q11UniSTS
Cytogenetic Map14p11UniSTS
AU047409  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23124,290,656 - 124,290,926 (+)MAPPERmRatBN7.2
mRatBN7.21842,910,533 - 42,911,501 (+)MAPPERmRatBN7.2
Rnor_6.01843,953,969 - 43,954,936NCBIRnor6.0
Rnor_6.03129,963,018 - 129,963,287NCBIRnor6.0
Rnor_5.01446,165,543 - 46,166,510UniSTSRnor5.0
Rnor_5.03136,442,355 - 136,442,624UniSTSRnor5.0
RGSC_v3.43125,064,719 - 125,064,988UniSTSRGSC3.4
RGSC_v3.41844,727,393 - 44,728,360UniSTSRGSC3.4
Celera1841,139,257 - 41,140,224UniSTS
Celera3123,010,442 - 123,010,711UniSTS
Cytogenetic Map3q36UniSTS
Cytogenetic Map14p11UniSTS
RH141490  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21842,919,576 - 42,919,772 (+)MAPPERmRatBN7.2
Rnor_6.01843,963,010 - 43,963,205NCBIRnor6.0
Rnor_5.01446,174,584 - 46,174,779UniSTSRnor5.0
RGSC_v3.41844,736,434 - 44,736,629UniSTSRGSC3.4
Celera1841,148,308 - 41,148,503UniSTS
Cytogenetic Map14p11UniSTS
Trim28  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21842,845,774 - 42,846,639 (+)MAPPERmRatBN7.2
Rnor_6.01843,889,372 - 43,890,236NCBIRnor6.0
Rnor_5.01446,101,219 - 46,102,083UniSTSRnor5.0
RGSC_v3.41844,661,266 - 44,662,130UniSTSRGSC3.4
Celera1841,074,256 - 41,075,120UniSTS
Cytogenetic Map18q11UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map14p11UniSTS
fd13c04.x1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21842,830,141 - 42,831,485 (+)MAPPERmRatBN7.2
Rnor_6.01843,870,839 - 43,872,182NCBIRnor6.0
Rnor_5.01446,085,122 - 46,086,465UniSTSRnor5.0
RGSC_v3.41844,641,677 - 44,643,020UniSTSRGSC3.4
Celera1841,058,632 - 41,059,975UniSTS
Cytogenetic Map18q11UniSTS
Cytogenetic Map14p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 10 67 161 76 76 47 21 47 6 258 117 8 142 70 87 29 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000079269   ⟹   ENSRNOP00000071171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1444,834,856 - 45,024,047 (-)Ensembl
mRatBN7.2 Ensembl1444,482,287 - 44,670,299 (-)Ensembl
Rnor_6.0 Ensembl1446,136,786 - 46,153,212 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000083407   ⟹   ENSRNOP00000069700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1844,029,927 - 44,141,865 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000169156   ⟹   ENSRNOP00000105461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1444,834,856 - 45,024,047 (-)Ensembl
RefSeq Acc Id: XM_039092752   ⟹   XP_038948680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81444,833,623 - 45,024,962 (-)NCBI
mRatBN7.21444,480,049 - 44,671,417 (-)NCBI
RefSeq Acc Id: XM_039092753   ⟹   XP_038948681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81444,833,623 - 44,939,763 (-)NCBI
mRatBN7.21444,480,049 - 44,559,488 (-)NCBI
RefSeq Acc Id: XM_063273828   ⟹   XP_063129898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81444,833,623 - 44,989,341 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001419723 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948680 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948681 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129898 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071171
  ENSRNOP00000071171.3
  ENSRNOP00000105461.1
Ensembl Acc Id: ENSRNOP00000071171   ⟸   ENSRNOT00000079269
RefSeq Acc Id: XP_038948680   ⟸   XM_039092752
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038948681   ⟸   XM_039092753
- Peptide Label: isoform X3
- UniProtKB: A6JDI1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000069700   ⟸   ENSRNOT00000083407
RefSeq Acc Id: XP_063129898   ⟸   XM_063273828
- Peptide Label: isoform X2
- UniProtKB: A6JDI1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105461   ⟸   ENSRNOT00000169156
Protein Domains
NWD1/2-like winged helix-turn-helix   NWD2 C-terminal beta-propeller

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JW13-F1-model_v2 AlphaFold A0A0G2JW13 1-132 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563065 AgrOrtholog
BioCyc Gene G2FUF-15693 BioCyc
Ensembl Genes ENSRNOG00000051837 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000061132 Ensembl
Ensembl Transcript ENSRNOT00000079269 ENTREZGENE
  ENSRNOT00000079269.3 UniProtKB/TrEMBL
  ENSRNOT00000169156.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro Beta-prop_NWD2_C UniProtKB/TrEMBL
  NACHT-WD_repeat UniProtKB/TrEMBL
  NWD1/2-like_wHTH UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Quino_amine_DH_bsu UniProtKB/TrEMBL
  Quinonprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene 289633 ENTREZGENE
PANTHER BETA TRANSDUCIN-RELATED PROTEIN UniProtKB/TrEMBL
  NACHT AND WD REPEAT DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam Beta-prop_NWD2_C UniProtKB/TrEMBL
  HTH_NWD1 UniProtKB/TrEMBL
PhenoGen Nwd2 PhenoGen
RatGTEx ENSRNOG00000051837 RatGTEx
  ENSRNOG00000061132 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50998 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
  YVTN repeat-like/Quinoprotein amine dehydrogenase UniProtKB/TrEMBL
UniProt A0A0G2JZT1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LU52_RAT UniProtKB/TrEMBL
  A6JDI1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Nwd2  NACHT and WD repeat domain containing 2  LOC103694210  NACHT and WD repeat domain-containing protein 2-like  Data merged from RGD:9140342 737654 PROVISIONAL
2014-08-25 LOC103694210  NACHT and WD repeat domain-containing protein 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2014-03-21 Nwd2  NACHT and WD repeat domain containing 2  RGD1563065  similar to 3110047P20Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563065  similar to 3110047P20Rik protein   RGD1563065_predicted  similar to 3110047P20Rik protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563065_predicted  similar to 3110047P20Rik protein (predicted)  LOC289633  similar to 3110047P20Rik protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC289633  similar to 3110047P20Rik protein      Symbol and Name status set to provisional 70820 PROVISIONAL