Pdxdc1 (pyridoxal-dependent decarboxylase domain containing 1) - Rat Genome Database

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Gene: Pdxdc1 (pyridoxal-dependent decarboxylase domain containing 1) Rattus norvegicus
Analyze
Symbol: Pdxdc1
Name: pyridoxal-dependent decarboxylase domain containing 1
RGD ID: 1562597
Description: Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in carboxylic acid metabolic process. Predicted to be located in Golgi apparatus. Orthologous to several human genes including PDXDC1 (pyridoxal dependent decarboxylase domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC108348184; LOC304721; MGC189517; pyridoxal-dependent decarboxylase domain-containing protein 1; pyridoxal-dependent decarboxylase domain-containing protein 1-like; RGD1562597; similar to expressed sequence AA415817
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8102,528,989 - 2,620,669 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl102,532,485 - 2,620,669 (+)EnsemblGRCr8
mRatBN7.2102,025,056 - 2,113,712 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl102,025,360 - 2,113,520 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx106,722,199 - 6,810,360 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01033,755,481 - 33,843,641 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0101,928,659 - 2,016,811 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd105,574,245 - 5,662,396 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive106,239,923 - 6,328,080 (+)NCBILyon_Normotensive
Lyon_Hypertensive107,934,222 - 8,022,378 (+)NCBILyon_Hypertensive
F344_StmMcwi107,943,839 - 8,031,992 (+)NCBIF344_StmMcwi
Rnor_6.0103,232,794 - 3,321,438 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl103,232,794 - 3,321,412 (-)Ensemblrn6Rnor6.0
Rnor_5.010512,125 - 572,698 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0102,110,310 - 2,198,883 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4101,543,542 - 1,637,788 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera101,057,357 - 1,143,887 (+)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15632090   PMID:25468996  


Genomics

Comparative Map Data
Pdxdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8102,528,989 - 2,620,669 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl102,532,485 - 2,620,669 (+)EnsemblGRCr8
mRatBN7.2102,025,056 - 2,113,712 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl102,025,360 - 2,113,520 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx106,722,199 - 6,810,360 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01033,755,481 - 33,843,641 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0101,928,659 - 2,016,811 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd105,574,245 - 5,662,396 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive106,239,923 - 6,328,080 (+)NCBILyon_Normotensive
Lyon_Hypertensive107,934,222 - 8,022,378 (+)NCBILyon_Hypertensive
F344_StmMcwi107,943,839 - 8,031,992 (+)NCBIF344_StmMcwi
Rnor_6.0103,232,794 - 3,321,438 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl103,232,794 - 3,321,412 (-)Ensemblrn6Rnor6.0
Rnor_5.010512,125 - 572,698 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0102,110,310 - 2,198,883 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4101,543,542 - 1,637,788 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera101,057,357 - 1,143,887 (+)NCBICelera
Cytogenetic Map10q11NCBI
PDXDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381614,974,735 - 15,153,218 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1614,974,591 - 15,153,671 (+)Ensemblhg38GRCh38
GRCh371615,068,592 - 15,233,267 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361614,976,487 - 15,039,690 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1654,559,959 - 54,615,133 (-)NCBICelera
Celera1616,208,460 - 16,214,455 (-)NCBICelera
Cytogenetic Map16p13.11NCBI
HuRef1614,770,766 - 14,776,699 (+)NCBIHuRef
CHM1_11615,152,218 - 15,214,923 (-)NCBICHM1_1
T2T-CHM13v2.01614,975,789 - 15,144,257 (+)NCBIT2T-CHM13v2.0
Pdxdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,651,025 - 13,721,018 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1613,651,012 - 13,720,995 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381613,833,145 - 13,903,176 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1613,833,148 - 13,903,131 (-)Ensemblmm10GRCm38
MGSCv371613,834,023 - 13,903,228 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361613,747,508 - 13,816,713 (-)NCBIMGSCv36mm8
Celera1614,437,978 - 14,508,442 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.64NCBI
Pdxdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955442185,615 - 222,956 (-)Ensembl
ChiLan1.0NW_004955442187,983 - 238,586 (-)NCBIChiLan1.0ChiLan1.0
PDXDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21815,327,716 - 15,394,591 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11619,110,519 - 19,177,164 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01613,722,703 - 13,785,674 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PDXDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1628,412,211 - 28,464,522 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl628,412,316 - 28,508,743 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha629,775,401 - 29,827,771 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0628,575,086 - 28,627,490 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl628,574,747 - 28,627,483 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1628,378,225 - 28,430,611 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0628,268,376 - 28,320,734 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0628,674,049 - 28,726,485 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pdxdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344114,848,182 - 114,903,996 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365012,946,669 - 3,001,553 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365012,946,402 - 3,001,712 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDXDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl37,407,731 - 7,520,679 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.137,465,274 - 7,520,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PDXDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1514,293,169 - 14,351,453 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl514,293,429 - 14,351,093 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606815,693,879 - 15,754,679 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdxdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248248,632,571 - 8,690,631 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248248,633,816 - 8,690,830 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pdxdc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v199,055,037 - 9,135,967 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pdxdc1
550 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:565
Count of miRNA genes:264
Interacting mature miRNAs:328
Transcripts:ENSRNOT00000003284
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
1549898Neuinf3Neuroinflammation QTL 326.4nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1015893911Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
RH141284  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2102,111,743 - 2,111,962 (+)MAPPERmRatBN7.2
mRatBN7.2102,111,743 - 2,111,962 (-)MAPPERmRatBN7.2
Rnor_6.0101,682,712 - 1,682,930NCBIRnor6.0
Rnor_6.0103,234,352 - 3,234,570NCBIRnor6.0
Rnor_5.010572,264 - 572,482UniSTSRnor5.0
Rnor_5.0102,111,868 - 2,112,086UniSTSRnor5.0
RGSC_v3.4101,545,100 - 1,545,318UniSTSRGSC3.4
Celera101,142,111 - 1,142,329UniSTS
Cytogenetic Map10q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000003284   ⟹   ENSRNOP00000003284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl102,532,512 - 2,620,669 (+)Ensembl
mRatBN7.2 Ensembl102,025,360 - 2,113,520 (+)Ensembl
Rnor_6.0 Ensembl103,232,794 - 3,321,412 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000040132   ⟹   ENSRNOP00000051130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl102,556,968 - 2,613,119 (+)Ensembl
mRatBN7.2 Ensembl102,050,015 - 2,105,969 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089118   ⟹   ENSRNOP00000074368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl102,547,810 - 2,611,552 (+)Ensembl
mRatBN7.2 Ensembl102,040,658 - 2,104,402 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090207   ⟹   ENSRNOP00000074713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl102,547,810 - 2,611,157 (+)Ensembl
mRatBN7.2 Ensembl102,040,658 - 2,104,007 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl103,304,502 - 3,321,278 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093722   ⟹   ENSRNOP00000076319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl102,532,492 - 2,611,154 (+)Ensembl
mRatBN7.2 Ensembl102,025,457 - 2,104,007 (+)Ensembl
Rnor_6.0 Ensembl103,241,933 - 3,321,404 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101094   ⟹   ENSRNOP00000079536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl102,532,565 - 2,612,155 (+)Ensembl
mRatBN7.2 Ensembl102,050,015 - 2,105,969 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115570   ⟹   ENSRNOP00000083833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl102,556,968 - 2,613,119 (+)Ensembl
mRatBN7.2 Ensembl102,050,015 - 2,105,969 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000168918   ⟹   ENSRNOP00000110783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl102,532,485 - 2,619,136 (+)Ensembl
RefSeq Acc Id: NM_001134961   ⟹   NP_001128433
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8102,532,512 - 2,620,669 (+)NCBI
mRatBN7.2102,025,360 - 2,113,520 (+)NCBI
Dahl_SR_JrHsd105,574,245 - 5,662,396 (+)NCBI
Lyon_Normotensive106,239,923 - 6,328,080 (+)NCBI
Lyon_Hypertensive107,934,222 - 8,022,378 (+)NCBI
F344_StmMcwi107,943,839 - 8,031,992 (+)NCBI
Rnor_6.0103,232,794 - 3,321,412 (-)NCBI
Rnor_5.0102,110,310 - 2,198,883 (-)NCBI
RGSC_v3.4101,543,542 - 1,637,788 (-)RGD
Celera101,057,357 - 1,143,887 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245705   ⟹   XP_006245767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8102,528,989 - 2,619,138 (+)NCBI
mRatBN7.2102,025,324 - 2,111,719 (+)NCBI
Rnor_6.0103,233,363 - 3,321,438 (-)NCBI
Rnor_5.0102,110,310 - 2,198,883 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245708   ⟹   XP_006245770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8102,532,477 - 2,619,138 (+)NCBI
mRatBN7.2102,025,648 - 2,111,987 (+)NCBI
Rnor_6.0103,233,363 - 3,321,210 (-)NCBI
Rnor_5.0102,110,310 - 2,198,883 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086236   ⟹   XP_038942164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8102,528,989 - 2,619,138 (+)NCBI
mRatBN7.2102,025,056 - 2,111,987 (+)NCBI
RefSeq Acc Id: XM_039086238   ⟹   XP_038942166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8102,532,477 - 2,619,138 (+)NCBI
mRatBN7.2102,025,324 - 2,111,987 (+)NCBI
RefSeq Acc Id: XM_063269267   ⟹   XP_063125337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8102,532,477 - 2,617,180 (+)NCBI
RefSeq Acc Id: XM_063269268   ⟹   XP_063125338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8102,528,989 - 2,619,138 (+)NCBI
RefSeq Acc Id: NP_001128433   ⟸   NM_001134961
- UniProtKB: G3V6B0 (UniProtKB/TrEMBL),   A6K4F5 (UniProtKB/TrEMBL),   B5DFK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245767   ⟸   XM_006245705
- Peptide Label: isoform X2
- UniProtKB: B5DFK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245770   ⟸   XM_006245708
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K7V9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076319   ⟸   ENSRNOT00000093722
Ensembl Acc Id: ENSRNOP00000003284   ⟸   ENSRNOT00000003284
RefSeq Acc Id: XP_038942164   ⟸   XM_039086236
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K7V9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942166   ⟸   XM_039086238
- Peptide Label: isoform X6
- UniProtKB: A0A1W2Q6L1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079536   ⟸   ENSRNOT00000101094
Ensembl Acc Id: ENSRNOP00000083833   ⟸   ENSRNOT00000115570
Ensembl Acc Id: ENSRNOP00000074713   ⟸   ENSRNOT00000090207
Ensembl Acc Id: ENSRNOP00000051130   ⟸   ENSRNOT00000040132
Ensembl Acc Id: ENSRNOP00000074368   ⟸   ENSRNOT00000089118
RefSeq Acc Id: XP_063125338   ⟸   XM_063269268
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K7V9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125337   ⟸   XM_063269267
- Peptide Label: isoform X3
- UniProtKB: B5DFK8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110783   ⟸   ENSRNOT00000168918
Protein Domains
PDXDC1-like third   PDXDC1/PDXD2 second

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V6B0-F1-model_v2 AlphaFold G3V6B0 1-785 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696934
Promoter ID:EPDNEW_R7454
Type:initiation region
Name:Pdxdc1_1
Description:pyridoxal-dependent decarboxylase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0103,321,283 - 3,321,343EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562597 AgrOrtholog
BioCyc Gene G2FUF-26213 BioCyc
Ensembl Genes ENSRNOG00000002407 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003284 ENTREZGENE
  ENSRNOT00000003284.7 UniProtKB/TrEMBL
  ENSRNOT00000040132.6 UniProtKB/TrEMBL
  ENSRNOT00000089118 ENTREZGENE
  ENSRNOT00000089118.3 UniProtKB/TrEMBL
  ENSRNOT00000090207.3 UniProtKB/TrEMBL
  ENSRNOT00000093722.3 UniProtKB/TrEMBL
  ENSRNOT00000101094 ENTREZGENE
  ENSRNOT00000101094.2 UniProtKB/TrEMBL
  ENSRNOT00000115570.2 UniProtKB/TrEMBL
  ENSRNOT00000168918 ENTREZGENE
  ENSRNOT00000168918.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.170 UniProtKB/TrEMBL
InterPro GrpII_AminoAcid_Decarb UniProtKB/TrEMBL
  PDXDC1-like_2nd UniProtKB/TrEMBL
  PDXDC1-like_3rd UniProtKB/TrEMBL
  PyrdxlP-dep_de-COase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major_dom UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major_sub1 UniProtKB/TrEMBL
KEGG Report rno:304721 UniProtKB/TrEMBL
NCBI Gene 304721 ENTREZGENE
PANTHER PTHR42735 UniProtKB/TrEMBL
  PYRIDOXAL-DEPENDENT DECARBOXYLASE DOMAIN-CONTAINING PROTEIN 1-RELATED UniProtKB/TrEMBL
Pfam PDXDC1-like_cen UniProtKB/TrEMBL
  PDXDC1-like_cen2 UniProtKB/TrEMBL
  Pyridoxal_deC UniProtKB/TrEMBL
PhenoGen Pdxdc1 PhenoGen
RatGTEx ENSRNOG00000002407 RatGTEx
Superfamily-SCOP PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
UniProt A0A0G2K7V9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K8S0_RAT UniProtKB/TrEMBL
  A0A1W2Q6L1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZN80_RAT UniProtKB/TrEMBL
  A0A8I6A005_RAT UniProtKB/TrEMBL
  A0ABK0M6A3_RAT UniProtKB/TrEMBL
  A6K4F5 ENTREZGENE, UniProtKB/TrEMBL
  B5DFK8 ENTREZGENE, UniProtKB/TrEMBL
  F1M024_RAT UniProtKB/TrEMBL
  G3V6B0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pdxdc1  pyridoxal-dependent decarboxylase domain containing 1  LOC108348184  pyridoxal-dependent decarboxylase domain-containing protein 1-like  Data merged from RGD:11517671 737654 PROVISIONAL
2016-08-02 LOC108348184  pyridoxal-dependent decarboxylase domain-containing protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-29 Pdxdc1  pyridoxal-dependent decarboxylase domain containing 1  RGD1562597_predicted  similar to expressed sequence AA415817 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562597_predicted  similar to expressed sequence AA415817 (predicted)  LOC304721  similar to expressed sequence AA415817  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC304721  similar to expressed sequence AA415817      Symbol and Name status set to provisional 70820 PROVISIONAL