Lonrf1 (LON peptidase N-terminal domain and ring finger 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Lonrf1 (LON peptidase N-terminal domain and ring finger 1) Rattus norvegicus
Analyze
Symbol: Lonrf1
Name: LON peptidase N-terminal domain and ring finger 1
RGD ID: 1562583
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be located in cytoplasm. Orthologous to human LONRF1 (LON peptidase N-terminal domain and ring finger 1); INTERACTS WITH (+)-schisandrin B; bisphenol A; indole-3-methanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306505; LON peptidase N-terminal domain and RING finger protein 1; RGD1562583; similar to hypothetical protein FLJ23749
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81662,687,931 - 62,718,525 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1662,687,746 - 62,718,520 (+)EnsemblGRCr8
mRatBN7.21655,984,572 - 56,015,156 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1655,984,463 - 56,015,156 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd1662,637,081 - 62,667,520 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1664,003,359 - 64,033,874 (+)NCBILyon_Normotensive
Lyon_Hypertensive1664,504,921 - 64,535,436 (+)NCBILyon_Hypertensive
F344_StmMcwi1660,636,814 - 60,667,197 (+)NCBIF344_StmMcwi
Rnor_6.01659,564,548 - 59,594,252 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1659,564,419 - 59,593,852 (+)Ensemblrn6Rnor6.0
Rnor_5.01659,243,387 - 59,272,649 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41659,651,010 - 59,703,999 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1654,041,326 - 54,070,974 (+)NCBICelera
Cytogenetic Map16q12.2NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19028597  


Genomics

Comparative Map Data
Lonrf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81662,687,931 - 62,718,525 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1662,687,746 - 62,718,520 (+)EnsemblGRCr8
mRatBN7.21655,984,572 - 56,015,156 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1655,984,463 - 56,015,156 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd1662,637,081 - 62,667,520 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1664,003,359 - 64,033,874 (+)NCBILyon_Normotensive
Lyon_Hypertensive1664,504,921 - 64,535,436 (+)NCBILyon_Hypertensive
F344_StmMcwi1660,636,814 - 60,667,197 (+)NCBIF344_StmMcwi
Rnor_6.01659,564,548 - 59,594,252 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1659,564,419 - 59,593,852 (+)Ensemblrn6Rnor6.0
Rnor_5.01659,243,387 - 59,272,649 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41659,651,010 - 59,703,999 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1654,041,326 - 54,070,974 (+)NCBICelera
Cytogenetic Map16q12.2NCBI
LONRF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38812,721,906 - 12,755,526 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl812,721,906 - 12,756,073 (-)Ensemblhg38GRCh38
GRCh37812,579,415 - 12,613,035 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36812,623,777 - 12,657,363 (-)NCBIBuild 36Build 36hg18NCBI36
Celera811,544,278 - 11,577,192 (-)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef811,121,429 - 11,155,007 (-)NCBIHuRef
CHM1_1812,780,588 - 12,814,186 (-)NCBICHM1_1
T2T-CHM13v2.0812,988,035 - 13,021,657 (-)NCBIT2T-CHM13v2.0
Lonrf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39836,683,216 - 36,716,513 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl836,683,218 - 36,716,670 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38836,216,062 - 36,249,359 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl836,216,064 - 36,249,516 (-)Ensemblmm10GRCm38
MGSCv37837,279,118 - 37,312,570 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36837,684,581 - 37,718,033 (-)NCBIMGSCv36mm8
MGSCv36835,148,248 - 35,180,441 (-)NCBIMGSCv36mm8
Celera838,855,912 - 38,888,822 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.05NCBI
Lonrf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554634,282,609 - 4,320,037 (+)Ensembl
ChiLan1.0NW_0049554634,282,609 - 4,318,716 (+)NCBIChiLan1.0ChiLan1.0
LONRF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2731,160,396 - 31,194,004 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan186,866,784 - 6,900,412 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0811,919,627 - 11,953,249 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.188,674,290 - 8,695,676 (-)NCBIPanPan1.1PanPan1.1panPan2
LONRF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11636,220,324 - 36,256,896 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1636,221,156 - 36,256,897 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1636,684,042 - 36,721,030 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01638,258,011 - 38,294,928 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1638,258,503 - 38,295,021 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11636,357,057 - 36,393,887 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01636,920,129 - 36,956,908 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01637,039,956 - 37,076,956 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lonrf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494342,940,974 - 42,972,894 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365732,170,724 - 2,202,429 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365732,169,534 - 2,201,456 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LONRF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl17883,322 - 917,161 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.117883,980 - 917,221 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.217712,524 - 754,880 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LONRF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1810,804,302 - 10,837,813 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl810,805,478 - 10,837,720 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605231,553,786 - 31,587,324 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lonrf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248394,247,428 - 4,278,881 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lonrf1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11350,828,542 - 50,857,205 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lonrf1
332 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:99
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000015142
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)166241446475736480Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat

Markers in Region
D16Got53  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21655,996,590 - 55,996,783 (+)MAPPERmRatBN7.2
Rnor_6.01659,576,548 - 59,576,740NCBIRnor6.0
Rnor_5.01659,255,032 - 59,255,224UniSTSRnor5.0
RGSC_v3.41659,686,752 - 59,686,945RGDRGSC3.4
RGSC_v3.41659,686,753 - 59,686,945UniSTSRGSC3.4
Celera1654,053,331 - 54,053,523UniSTS
RGSC_v3.11659,686,828 - 59,687,020RGD
RH 3.4 Map16558.2UniSTS
RH 3.4 Map16558.2RGD
RH 2.0 Map16645.0RGD
Cytogenetic Map16q12.2UniSTS
BE113584  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21655,983,883 - 55,984,047 (+)MAPPERmRatBN7.2
Rnor_6.01659,563,840 - 59,564,003NCBIRnor6.0
Rnor_5.01659,242,695 - 59,242,858UniSTSRnor5.0
RGSC_v3.41659,673,929 - 59,674,092UniSTSRGSC3.4
Celera1654,040,649 - 54,040,812UniSTS
RH 3.4 Map16559.6UniSTS
Cytogenetic Map16q12.2UniSTS
BE116164  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21656,003,629 - 56,003,814 (+)MAPPERmRatBN7.2
Rnor_6.01659,583,648 - 59,583,832NCBIRnor6.0
Rnor_5.01659,262,132 - 59,262,316UniSTSRnor5.0
RGSC_v3.41659,693,792 - 59,693,976UniSTSRGSC3.4
Celera1654,060,370 - 54,060,554UniSTS
RH 3.4 Map16560.21UniSTS
Cytogenetic Map16q12.2UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000083434   ⟹   ENSRNOP00000072463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1662,687,746 - 62,718,520 (+)Ensembl
mRatBN7.2 Ensembl1655,984,463 - 56,015,156 (+)Ensembl
Rnor_6.0 Ensembl1659,564,419 - 59,593,852 (+)Ensembl
RefSeq Acc Id: NM_001432814   ⟹   NP_001419743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd1662,637,081 - 62,667,520 (+)NCBI
Lyon_Normotensive1664,003,359 - 64,033,874 (+)NCBI
Lyon_Hypertensive1664,504,921 - 64,535,436 (+)NCBI
F344_StmMcwi1660,636,814 - 60,667,197 (+)NCBI
RefSeq Acc Id: XM_017600372   ⟹   XP_017455861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81662,687,935 - 62,718,525 (+)NCBI
mRatBN7.21655,984,572 - 56,015,156 (+)NCBI
Rnor_6.01659,564,548 - 59,594,252 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063275867   ⟹   XP_063131937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81662,687,931 - 62,718,525 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001419743 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455861 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131937 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM09209 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000072463
  ENSRNOP00000072463.3
RefSeq Acc Id: XP_017455861   ⟸   XM_017600372
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000072463   ⟸   ENSRNOT00000083434
RefSeq Acc Id: XP_063131937   ⟸   XM_063275867
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K313 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001419743   ⟸   NM_001432814

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K313-F1-model_v2 AlphaFold A0A0G2K313 1-833 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562583 AgrOrtholog
BioCyc Gene G2FUF-11191 BioCyc
Ensembl Genes ENSRNOG00000053706 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083434 ENTREZGENE
  ENSRNOT00000083434.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  2.30.130.40 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro Lon_prtase_N_sf UniProtKB/TrEMBL
  Pept_S16_N UniProtKB/TrEMBL
  PUA-like UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene 306505 ENTREZGENE
PANTHER LON PEPTIDASE N-TERMINAL DOMAIN AND RING FINGER PROTEIN 1 UniProtKB/TrEMBL
  RING FINGER PROTEIN 127 UniProtKB/TrEMBL
Pfam LON UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/TrEMBL
PhenoGen Lonrf1 PhenoGen
PROSITE LON_N UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053706 RatGTEx
SMART LON UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
Superfamily-SCOP PUA-like UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A0G2K313 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Lonrf1  LON peptidase N-terminal domain and ring finger 1   Lonrf1_predicted  LON peptidase N-terminal domain and ring finger 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Lonrf1_predicted  LON peptidase N-terminal domain and ring finger 1 (predicted)  RGD1562583_predicted  similar to hypothetical protein FLJ23749 (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1562583_predicted  similar to hypothetical protein FLJ23749 (predicted)  LOC306505  similar to hypothetical protein FLJ23749  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC306505  similar to hypothetical protein FLJ23749      Symbol and Name status set to provisional 70820 PROVISIONAL