Ccdc196 (coiled-coil domain containing 196) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ccdc196 (coiled-coil domain containing 196) Rattus norvegicus
Analyze
Symbol: Ccdc196
Name: coiled-coil domain containing 196
RGD ID: 1562540
Description: Orthologous to human CCDC196 (coiled-coil domain containing 196); INTERACTS WITH methoxychlor; Triptolide; aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC500678; LOC500678; putative coiled-coil domain-containing protein 196; RGD1562540; RGD1562540; uncharacterized protein LOC500678
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86102,646,156 - 102,672,145 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6102,648,953 - 102,664,225 (+)EnsemblGRCr8
mRatBN7.2696,913,960 - 96,939,415 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl696,915,869 - 96,931,141 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx697,349,189 - 97,364,605 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0697,648,332 - 97,663,752 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0697,038,847 - 97,054,255 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06101,288,951 - 101,304,220 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6101,287,035 - 101,304,220 (+)Ensemblrn6Rnor6.0
Rnor_5.06110,670,593 - 110,685,862 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46100,794,306 - 100,809,574 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera695,320,218 - 95,335,173 (+)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Ccdc196
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86102,646,156 - 102,672,145 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6102,648,953 - 102,664,225 (+)EnsemblGRCr8
mRatBN7.2696,913,960 - 96,939,415 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl696,915,869 - 96,931,141 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx697,349,189 - 97,364,605 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0697,648,332 - 97,663,752 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0697,038,847 - 97,054,255 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06101,288,951 - 101,304,220 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6101,287,035 - 101,304,220 (+)Ensemblrn6Rnor6.0
Rnor_5.06110,670,593 - 110,685,862 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46100,794,306 - 100,809,574 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera695,320,218 - 95,335,173 (+)NCBICelera
Cytogenetic Map6q24NCBI
CCDC196
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381466,486,371 - 66,498,553 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1466,411,704 - 66,498,677 (+)Ensemblhg38GRCh38
GRCh371466,953,089 - 66,965,271 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361466,022,862 - 66,035,024 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1447,012,167 - 47,024,330 (+)NCBICelera
Cytogenetic Map14q23.3NCBI
HuRef1447,123,056 - 47,135,219 (+)NCBIHuRef
CHM1_11466,891,247 - 66,903,400 (+)NCBICHM1_1
T2T-CHM13v2.01460,693,356 - 60,705,539 (+)NCBIT2T-CHM13v2.0
Ccdc196
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391278,243,487 - 78,260,938 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1278,241,016 - 78,255,803 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381278,197,033 - 78,214,073 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1278,194,242 - 78,209,029 (+)Ensemblmm10GRCm38
MGSCv371279,298,161 - 79,309,917 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361279,115,940 - 79,127,392 (+)NCBIMGSCv36mm8
Celera1279,660,993 - 79,672,749 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1235.51NCBI
CCDC196
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21567,590,858 - 67,603,044 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11466,807,370 - 66,819,556 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01447,060,483 - 47,072,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11465,942,714 - 65,954,879 (+)NCBIPanPan1.1PanPan1.1panPan2
CCDC196
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1840,560,457 - 40,575,006 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl840,533,652 - 40,574,925 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha840,245,092 - 40,259,640 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0840,781,958 - 40,796,689 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl840,755,313 - 40,796,608 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1840,401,608 - 40,416,338 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0840,472,289 - 40,486,840 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0840,831,037 - 40,845,583 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc196
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864064,232,441 - 64,247,055 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364959,946,577 - 9,952,595 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364959,946,577 - 9,959,178 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC196
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12443,680,767 - 43,694,327 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605331,876,293 - 31,888,289 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc196
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1791,864,668 - 91,875,888 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccdc196
171 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:61
Interacting mature miRNAs:61
Transcripts:ENSRNOT00000046901
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
6 4 6 34 31 29 15 10 15 5 63 28 1 26 11 28 14 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001438380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001438381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001438382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000046901   ⟹   ENSRNOP00000042589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6102,648,953 - 102,664,225 (+)Ensembl
mRatBN7.2 Ensembl696,915,869 - 96,931,141 (+)Ensembl
Rnor_6.0 Ensembl6101,288,951 - 101,304,220 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084354   ⟹   ENSRNOP00000070414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl6101,287,035 - 101,304,188 (+)Ensembl
RefSeq Acc Id: NM_001134630   ⟹   NP_001128102
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,953 - 102,664,225 (+)NCBI
mRatBN7.2696,915,869 - 96,931,141 (+)NCBI
Rnor_6.06101,288,951 - 101,304,220 (+)NCBI
Rnor_5.06110,670,593 - 110,685,862 (+)NCBI
RGSC_v3.46100,794,306 - 100,809,574 (+)RGD
Celera695,320,218 - 95,335,173 (+)RGD
Sequence:
RefSeq Acc Id: XM_039112723   ⟹   XP_038968651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,887 - 102,664,232 (+)NCBI
mRatBN7.2696,915,788 - 96,931,148 (+)NCBI
RefSeq Acc Id: XM_039112725   ⟹   XP_038968653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,880 - 102,668,620 (+)NCBI
mRatBN7.2696,915,784 - 96,935,348 (+)NCBI
RefSeq Acc Id: XM_039112727   ⟹   XP_038968655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,168 - 102,661,475 (+)NCBI
mRatBN7.2696,915,784 - 96,928,557 (+)NCBI
RefSeq Acc Id: XM_039112728   ⟹   XP_038968656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,883 - 102,672,145 (+)NCBI
mRatBN7.2696,915,784 - 96,938,837 (+)NCBI
RefSeq Acc Id: XM_039112731   ⟹   XP_038968659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,850 - 102,654,738 (+)NCBI
mRatBN7.2696,915,719 - 96,921,623 (+)NCBI
RefSeq Acc Id: XM_063262309   ⟹   XP_063118379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,156 - 102,664,232 (+)NCBI
RefSeq Acc Id: XM_063262310   ⟹   XP_063118380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,156 - 102,664,232 (+)NCBI
RefSeq Acc Id: XM_063262311   ⟹   XP_063118381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,156 - 102,661,475 (+)NCBI
RefSeq Acc Id: XM_063262312   ⟹   XP_063118382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,880 - 102,664,232 (+)NCBI
RefSeq Acc Id: XM_063262313   ⟹   XP_063118383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,168 - 102,664,232 (+)NCBI
RefSeq Acc Id: XM_063262314   ⟹   XP_063118384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,878 - 102,661,475 (+)NCBI
RefSeq Acc Id: XM_063262315   ⟹   XP_063118385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,159 - 102,664,232 (+)NCBI
RefSeq Acc Id: XM_063262316   ⟹   XP_063118386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,156 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_005505562
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,887 - 102,672,145 (+)NCBI
mRatBN7.2696,915,788 - 96,939,415 (+)NCBI
RefSeq Acc Id: XR_005505563
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,168 - 102,672,145 (+)NCBI
mRatBN7.2696,913,960 - 96,935,348 (+)NCBI
RefSeq Acc Id: XR_005505564
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,156 - 102,672,145 (+)NCBI
mRatBN7.2696,913,960 - 96,935,348 (+)NCBI
RefSeq Acc Id: XR_005505565
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,880 - 102,672,145 (+)NCBI
mRatBN7.2696,915,778 - 96,935,348 (+)NCBI
RefSeq Acc Id: XR_010052135
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,880 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052136
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,880 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052137
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,156 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052138
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,156 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052139
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,884 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052140
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,883 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052141
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,880 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052142
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,168 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052143
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,648,878 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052144
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,157 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052145
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,157 - 102,672,145 (+)NCBI
RefSeq Acc Id: XR_010052146
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86102,646,160 - 102,672,145 (+)NCBI
RefSeq Acc Id: NP_001128102   ⟸   NM_001134630
- UniProtKB: D4A4F0 (UniProtKB/TrEMBL),   A6HCD4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000042589   ⟸   ENSRNOT00000046901
Ensembl Acc Id: ENSRNOP00000070414   ⟸   ENSRNOT00000084354
RefSeq Acc Id: XP_038968659   ⟸   XM_039112731
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968656   ⟸   XM_039112728
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968653   ⟸   XM_039112725
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968655   ⟸   XM_039112727
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968651   ⟸   XM_039112723
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118386   ⟸   XM_063262316
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063118379   ⟸   XM_063262309
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118380   ⟸   XM_063262310
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118381   ⟸   XM_063262311
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118385   ⟸   XM_063262315
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063118383   ⟸   XM_063262313
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063118384   ⟸   XM_063262314
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063118382   ⟸   XM_063262312
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4F0-F1-model_v2 AlphaFold D4A4F0 1-175 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694685
Promoter ID:EPDNEW_R5209
Type:initiation region
Name:Ccdc196_1
Description:coiled-coil domain containing 196
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06101,288,945 - 101,289,005EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562540 AgrOrtholog
BioCyc Gene G2FUF-37000 BioCyc
Ensembl Genes ENSRNOG00000033423 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046901 ENTREZGENE
  ENSRNOT00000046901.5 UniProtKB/TrEMBL
InterPro CCDC196 UniProtKB/TrEMBL
KEGG Report rno:500678 UniProtKB/TrEMBL
NCBI Gene 500678 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 196-RELATED UniProtKB/TrEMBL
  COILED-COIL DOMAIN-CONTAINING PROTEIN 196-RELATED UniProtKB/TrEMBL
PhenoGen Ccdc196 PhenoGen
RatGTEx ENSRNOG00000033423 RatGTEx
UniProt A6HCD4 ENTREZGENE, UniProtKB/TrEMBL
  D4A4F0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-24 Ccdc196  coiled-coil domain containing 196  RGD1562540  RGD1562540  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562540  RGD1562540   RGD1562540_predicted  RGD1562540 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562540_predicted  RGD1562540 (predicted)  LOC500678  LOC500678  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500678  LOC500678      Symbol and Name status set to provisional 70820 PROVISIONAL