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Gene: Apbb2 (amyloid beta precursor protein binding family B member 2) Rattus norvegicus

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Symbol:

Apbb2

Name:

amyloid beta precursor protein binding family B member 2

RGD ID:

1562438

Description:

Predicted to enable amyloid-beta binding activity and molecular adaptor activity. Predicted to be involved in several processes, including maintenance of lens transparency; negative regulation of cell cycle phase transition; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within extracellular matrix organization; generation of neurons; and regulation of apoptotic process. Predicted to be located in Golgi apparatus; early endosome; and endoplasmic reticulum. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Alzheimer's disease and cognitive disorder. Orthologous to human APBB2 (amyloid beta precursor protein binding family B member 2); INTERACTS WITH 2,3,4,7,8-Pentachlorodibenzofuran; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

amyloid beta (A4) precursor protein-binding, family B, member 2; amyloid beta A4 precursor protein-binding family B member 2; amyloid-beta A4 precursor protein-binding family B member 2; LOC305338; RGD1562438; similar to amyloid beta (A4) precursor protein-binding, family B, member 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	41,849,638 - 42,232,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	41,911,785 - 42,232,280 (+)	Ensembl				GRCr8
mRatBN7.2	14	41,557,918 - 41,878,622 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	41,557,972 - 41,877,495 (+)	Ensembl				mRatBN7.2
Rnor_6.0	14	43,205,047 - 43,526,968 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	43,512,901 - 43,523,080 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	43,126,873 - 43,315,801 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	44,197,568 - 44,526,047 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	40,786,859 - 41,031,083 (+)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

cognitive disorder (ISO)

Weight Gain (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,4,7,8-Pentachlorodibenzofuran (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

amphotericin B (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dieldrin (EXP)

diquat (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

entinostat (ISO)

epoxiconazole (ISO)

FR900359 (ISO)

fulvestrant (ISO)

geraniol (ISO)

menadione (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

nickel dichloride (EXP)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

picoxystrobin (ISO)

potassium chromate (ISO)

propiconazole (ISO)

quercetin (ISO)

quinolin-8-ol (ISO)

rac-lactic acid (ISO)

resorcinol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

torcetrapib (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (ISO)

biological_process (ND)

extracellular matrix organization (ISO)

maintenance of lens transparency (IEA,ISO)

negative regulation of apoptotic process (ISO)

negative regulation of cell cycle phase transition (IEA,ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

neuron migration (ISO)

positive regulation of apoptotic process (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IBA)

smooth muscle contraction (IEA,ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO)

early endosome (IEA,ISO)

endoplasmic reticulum (IEA,ISO)

Golgi apparatus (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

amyloid-beta binding (IBA,IEA)

molecular adaptor activity (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	APBB2 genetic polymorphisms are associated with severe cognitive impairment in centenarians.	Golanska E, etal., Exp Gerontol. 2013 Apr;48(4):391-4. doi: 10.1016/j.exger.2013.01.013. Epub 2013 Feb 4.
3.	Genetic association of the APP binding protein 2 gene (APBB2) with late onset Alzheimer disease.	Li Y, etal., Hum Mutat. 2005 Mar;25(3):270-7.
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:12089154	PMID:15629131	PMID:16407979

Genomics

Comparative Map Data

Apbb2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	41,849,638 - 42,232,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	41,911,785 - 42,232,280 (+)	Ensembl				GRCr8
mRatBN7.2	14	41,557,918 - 41,878,622 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	41,557,972 - 41,877,495 (+)	Ensembl				mRatBN7.2
Rnor_6.0	14	43,205,047 - 43,526,968 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	43,512,901 - 43,523,080 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	43,126,873 - 43,315,801 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	44,197,568 - 44,526,047 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	40,786,859 - 41,031,083 (+)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

APBB2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	40,810,027 - 41,214,542 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	40,810,027 - 41,216,714 (-)	Ensembl			hg38	GRCh38
GRCh37	4	40,812,044 - 41,216,559 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	40,510,996 - 40,911,245 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	40,657,166 - 41,057,416	NCBI
Celera	4	41,255,358 - 41,659,952 (-)	NCBI		Celera
Cytogenetic Map	4	p14-p13	NCBI
HuRef	4	40,134,003 - 40,538,593 (-)	NCBI		HuRef
CHM1_1	4	40,811,768 - 41,216,779 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	40,783,978 - 41,188,337 (-)	NCBI		T2T-CHM13v2.0

Apbb2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	66,456,068 - 66,779,189 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	66,456,046 - 66,776,127 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	66,298,725 - 66,619,064 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	66,298,703 - 66,618,784 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	66,693,127 - 67,009,910 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	66,581,023 - 66,897,806 (-)	NCBI		MGSCv36	mm8
Celera	5	63,600,514 - 63,917,425 (-)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	34.43	NCBI

Apbb2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	6,513,980 - 6,783,014 (+)	Ensembl
ChiLan1.0	NW_004955443	6,513,762 - 6,786,247 (+)	NCBI	ChiLan1.0	ChiLan1.0

APBB2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	40,994,121 - 41,397,477 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	41,186,549 - 41,591,159 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	35,133,490 - 35,538,443 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	40,984,632 - 41,386,264 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	40,988,428 - 41,189,064 (-)	Ensembl			panPan2	panpan1.1

APBB2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	71,454,814 - 71,830,482 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	71,454,585 - 71,826,749 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	74,004,793 - 74,379,285 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	72,215,300 - 72,590,507 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	72,215,204 - 72,588,489 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	71,492,277 - 71,866,478 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	71,647,497 - 72,022,440 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	72,031,249 - 72,406,523 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Apbb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	37,746,664 - 38,134,814 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	8,167,173 - 8,340,300 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	8,166,380 - 8,489,489 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

APBB2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	31,921,593 - 32,193,940 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	31,921,587 - 32,302,237 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	33,221,452 - 33,426,852 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

APBB2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	9,130,947 - 9,530,897 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	9,311,146 - 9,534,105 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	55,463,239 - 55,867,809 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Apbb2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	25,924,714 - 26,262,386 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624761	25,924,747 - 26,265,763 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Apbb2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	23,421,459 - 23,739,035 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Apbb2
2538 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1736
Count of miRNA genes:	306
Interacting mature miRNAs:	424
Transcripts:	ENSRNOT00000029018, ENSRNOT00000049214, ENSRNOT00000050664
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	38023710	83023710	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39009444	84009444	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	31238080	72970315	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30674469	85041098	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	33424686	102238540	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18915454	42433608	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	38023710	83023710	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22521517	67521517	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18895192	63895192	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17906726	54251504	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	38023710	83023710	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39411170	87582095	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	38023710	83023710	Rat

Markers in Region

D14Mit9

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	42,227,219 - 42,227,461 (+)	Marker Load Pipeline
mRatBN7.2	14	41,873,444 - 41,873,686 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,521,791 - 43,522,032	NCBI	Rnor6.0
Rnor_5.0	14	43,311,872 - 43,312,113	UniSTS	Rnor5.0
RGSC_v3.4	14	44,521,426 - 44,521,668	RGD	RGSC3.4
RGSC_v3.4	14	44,521,427 - 44,521,668	UniSTS	RGSC3.4
Celera	14	41,025,904 - 41,026,147	UniSTS
RGSC_v3.1	14	44,523,774 - 44,524,072	RGD
RH 2.0 Map	14	459.3	RGD
Cytogenetic Map	14	p11	UniSTS

D14Mgh5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	42,224,797 - 42,224,971 (+)	Marker Load Pipeline
mRatBN7.2	14	41,871,022 - 41,871,196 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,519,364 - 43,519,537	NCBI	Rnor6.0
Rnor_5.0	14	43,309,667 - 43,309,840	UniSTS	Rnor5.0
RGSC_v3.4	14	44,519,091 - 44,519,264	UniSTS	RGSC3.4
RGSC_v3.4	14	44,519,090 - 44,519,264	RGD	RGSC3.4
RGSC_v3.4	14	44,508,396 - 44,508,570	RGD	RGSC3.4
RGSC_v3.4	14	44,508,397 - 44,508,570	UniSTS	RGSC3.4
Celera	14	41,023,490 - 41,023,663	UniSTS
RGSC_v3.1	14	44,521,481 - 44,521,655	RGD
Cytogenetic Map	14	p11	UniSTS

D14Mgh6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,658,190 - 41,658,327 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,305,859 - 43,305,995	NCBI	Rnor6.0
Rnor_5.0	14	43,097,692 - 43,097,828	UniSTS	Rnor5.0
RGSC_v3.4	14	44,291,075 - 44,291,212	RGD	RGSC3.4
RGSC_v3.4	14	44,291,076 - 44,291,212	UniSTS	RGSC3.4
Celera	14	40,811,690 - 40,811,826	UniSTS
RGSC_v3.1	14	44,293,466 - 44,293,603	RGD
Cytogenetic Map	14	p11	UniSTS

D14Rat56

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	41,978,813 - 41,979,000 (+)	Marker Load Pipeline
mRatBN7.2	14	41,625,003 - 41,625,190 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,272,603 - 43,272,789	NCBI	Rnor6.0
Rnor_5.0	14	43,064,714 - 43,064,900	UniSTS	Rnor5.0
RGSC_v3.4	14	44,257,619 - 44,257,806	RGD	RGSC3.4
RGSC_v3.4	14	44,257,620 - 44,257,806	UniSTS	RGSC3.4
Celera	14	40,778,345 - 40,778,531	UniSTS
RGSC_v3.1	14	44,260,010 - 44,260,197	RGD
RH 2.0 Map	14	439.5	RGD
SHRSP x BN Map	14	28.2599	RGD
FHH x ACI Map	14	39.47	RGD
Cytogenetic Map	14	p11	UniSTS

D14Rat63

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	42,160,077 - 42,160,172 (+)	Marker Load Pipeline
mRatBN7.2	14	41,806,290 - 41,806,385 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,454,225 - 43,454,319	NCBI	Rnor6.0
Rnor_5.0	14	43,244,698 - 43,244,792	UniSTS	Rnor5.0
RGSC_v3.4	14	44,443,343 - 44,443,438	RGD	RGSC3.4
RGSC_v3.4	14	44,443,344 - 44,443,438	UniSTS	RGSC3.4
Celera	14	40,958,541 - 40,958,635	UniSTS
RGSC_v3.1	14	44,445,734 - 44,445,829	RGD
RH 2.0 Map	14	460.1	RGD
SHRSP x BN Map	14	28.34	RGD
FHH x ACI Map	14	39.47	RGD
Cytogenetic Map	14	p11	UniSTS

D14Got53

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,588,838 - 41,589,076 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,236,538 - 43,236,775	NCBI	Rnor6.0
Rnor_5.0	14	43,028,642 - 43,028,879	UniSTS	Rnor5.0
RGSC_v3.4	14	44,220,787 - 44,221,025	RGD	RGSC3.4
RGSC_v3.4	14	44,220,788 - 44,221,025	UniSTS	RGSC3.4
Celera	14	40,742,201 - 40,742,438	UniSTS
RGSC_v3.1	14	44,223,178 - 44,223,416	RGD
RH 2.0 Map	14	449.1	RGD
Cytogenetic Map	14	p11	UniSTS

BI277850

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,877,776 - 41,877,949 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,526,123 - 43,526,295	NCBI	Rnor6.0
Rnor_5.0	14	43,316,204 - 43,316,376	UniSTS	Rnor5.0
RGSC_v3.4	14	44,525,759 - 44,525,931	UniSTS	RGSC3.4
Celera	14	41,030,238 - 41,030,410	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH141190

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	42,230,933 - 42,231,138 (+)	Marker Load Pipeline
mRatBN7.2	14	41,877,158 - 41,877,363 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,525,505 - 43,525,709	NCBI	Rnor6.0
Rnor_5.0	14	43,315,586 - 43,315,790	UniSTS	Rnor5.0
RGSC_v3.4	14	44,525,141 - 44,525,345	UniSTS	RGSC3.4
Celera	14	41,029,620 - 41,029,824	UniSTS
Cytogenetic Map	14	p11	UniSTS

stSG602612

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,834,909 - 41,836,169 (+)	MAPPER	mRatBN7.2
mRatBN7.2	14	41,834,961 - 41,836,169 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,482,833 - 43,484,040	NCBI	Rnor6.0
Rnor_6.0	14	43,482,781 - 43,484,040	NCBI	Rnor6.0
Rnor_5.0	14	43,273,136 - 43,274,343	UniSTS	Rnor5.0
Rnor_5.0	14	43,273,084 - 43,274,343	UniSTS	Rnor5.0
RGSC_v3.4	14	44,472,344 - 44,473,603	UniSTS	RGSC3.4
RGSC_v3.4	14	44,472,396 - 44,473,603	UniSTS	RGSC3.4
Celera	14	40,987,207 - 40,988,414	UniSTS
Celera	14	40,987,155 - 40,988,414	UniSTS
Cytogenetic Map	14	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000050664 ⟹ ENSRNOP00000041399

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	14	43,512,901 - 43,523,080 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100119 ⟹ ENSRNOP00000082727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	41,911,928 - 42,231,222 (+)	Ensembl
mRatBN7.2 Ensembl	14	41,627,942 - 41,877,495 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106751 ⟹ ENSRNOP00000088203

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	41,911,785 - 42,232,280 (+)	Ensembl
mRatBN7.2 Ensembl	14	41,627,942 - 41,877,495 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115068 ⟹ ENSRNOP00000084619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	41,911,785 - 42,232,280 (+)	Ensembl
mRatBN7.2 Ensembl	14	41,633,251 - 41,875,421 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119030 ⟹ ENSRNOP00000084452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	41,557,972 - 41,814,078 (+)	Ensembl

RefSeq Acc Id:

NM_001427465 ⟹ NP_001414394

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,787 - 42,232,397 (+)	NCBI

RefSeq Acc Id:

XM_017599457 ⟹ XP_017454946

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,167,206 - 42,232,930 (+)	NCBI
mRatBN7.2	14	41,834,981 - 41,878,622 (+)	NCBI
Rnor_6.0	14	43,488,336 - 43,526,968 (+)	NCBI

Sequence:

show sequence

GTCTTGAAAAACAAAACAAAACAAAACAAAACAAAGATAGGGCCTCACGTAGCCCAAACTGCCG
TTGGGCTGACTGTAGAGCTGCGCCTGACCCTGAACTCCTGGTCCTCCTGCCCCCATCTTCCTAG
TGCAGGGACTCCATGGGAAAAGGTTTAAAGTGACCTATCTATGAGCATATAAAACCAGCCTGTT
AGGGACCAGAAGGGAGGCACGGAGACTTGACACACCACTACAACCATCCAGGGGAGAGAAGATG
ACCATGGGGACCGTGGGGACAGTTAGAGAAGCAGGGAGGGGCATGTTTGAGAGTGTATTCAGAG
AGCATTGGTGATCATCAAGTACGGTCTCCCTACCAGGAGACTTCTCTGTCCCATCTGACTTATC
CCCCCCCCCCCCCGCTTCAATCCTGTTACAAGCTGAGAGGCAGAAAACCACTCTAGAATTGTGT
GGGAGGGAGGAGAGCCACCTTGCGAAATCAGTTCATCACCAACCTTGGTGAGGGCTACCCTGGC
TACTGAACCCCAACCCTCCAATCACCCACAGCGCCACCTTCAGGTGGGCTGCATCCCTACCTTG
TAGCTGCTGCAAATAGCTAATTCCGAGTTAAGGCTTATAAGTAGCAGAGGTAACACAGATCATA
GATCACTGAAGTCAATGGCGCTATCCCTGCAGAGACACCTGCTAACCAGAAAAGGCAATTGTCA
GCACAGATTCTGGTTAGCATATGCATATCATAAATATTGAACAGATAAGTAAATGTTTGGTCCC
GTTTTAAAACATGAACATTAGGAGATTCCAGTACACCTGCTGTGCTTCTCCAAATCAGACAAAC
GTCCTCGTTTAACACACTACTTCATTTCTGTGTTTGCTTCCCGTTTTCTCTTCTTCCTCTGCAC
AAGGAGTGTGGGGGGTTTGAACAAAACACAGCCAATCTTCTACTTCATTTTGTTAATTAATCAA
TCAAATAGCTTATTCATGCCCAGCACAATTAGGCAAAGGGAATATTCCGTGCACACAATGTAAT
CAGCAAATGAGCTTGCCTCCTTCTTTCAAACTTCTCTCTTGACCGCCAGTCCCATTTAAAATGC
TGTCACTTAGCCAACTGGACACTTTTCTGCTTCCATGTAGATGGGGGGGGGGGGGGTGGCCAGC
TAGAAACGACAGTGATAAGAGTGCCAGGGTGAGCTTGGCTTCAAGTCAGCTGTTCCTAAGAGGT
GTCTTAAGCGGAGAAATGAGTTGCTGTAAGGGCTTTGTGCAGATTAGCAGGTAGTCTTAAAAAT
GTACTGTCCAGCCCAGCTCGCCCTGGGCTCCCTTCTGAAATCTATTCATTTCATTCACTCTCTG
CTTTGTGGAAGAGTTTGTCGTGGAGGCTCCCTGGCTGTGTGTAGTAGCACACACAAGCACAATA
GGGTCAGAATTAACTTTCTTTACAAGAGACTGTACAAAGGGTACAGAACATAGCCTGGGGTGGC
GGTTTGCACAGCCCCCTTGCTCAAGACCCTTGCAGCCGGGAGTACCTGCCAAAGCGTCTGGCCC
GAGCACCTGGCGGGAGCACCGCAGGAGGGCCCCGGCTCAGCAGCCAATGGGAGATGGTGGCCTC
GTGGGCGGGGCGGGGCGGCGCGGAAGCAGCGAGCTTGAACTTGAGATGGAAGTGCTGCCGCTGC
CGCTGCTGCCTCCGCTGCTTGCTAGCTTCTGCCGCTGGCTTAAAGCAAGTGCTCCGCTGGCTTG
GCTAGGGTACCAGGTCTTTGCCCTAGAGCCTCGGACAGTGCCTCCGCCCTGCCCCGGTAACTGG
TAGACCGACCGAGAACTCAAGGGACTTTGCTTATGTGGCAAGAGACAAAGACACGAGAATTCTG
AAATGCCATGTGTTTCGATGTGACACACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCT
GTTCCAAGATTATGGCTGAACGGAAGAATGCCAAAGCCCTGGCCTGCAGCTCCTTACAGGAGAG
GACCAATATGAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTG
CAGAAGTTCCACGTGCAGTACCTGGGCATGTTACCTGTAGACCGACCTGTCGGCATGGACACCC
TGAACAGTGCCATAGAGAATCTTATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGAACAT
GAACGTGGCCGATGCCACTGTGACAGTCATCAATGAAAAGAATGAAGAGGAGATCTTGGTGGAA
TGTCGGGTGCGCTTTCTGTCCTTCATGGGCGTCGGGAAGGACGTCCATACGTTTGCCTTCATCA
TGGACACTGGGAACCAGCGCTTTGAGTGCCACGTGTTCTGGTGTGAGCCTAATGCAGCCAATGT
GTCGGAAGCTGTCCAGGCTGCCTGCATGCTGCGATATCAGAAGTGCTTGGTAGCCAGGCCACCT
TCACAGAAAGTCCGCCCCCCACCCCCGCCAGCCGATTCAGTGACCCGGAGAGTCACAACCAATG
TGAAGCGAGGGGTCTTATCTCTCATTGACACTTTGAAACAGAAGCGGCCTGTCACAGAGACACC
CTAGCAGCCCGGGACGCGGGGAGTCTGTCACTGTTTCCTGAGGATCGAGTAGCTACACTAAAGA
AGCCCACGCCTGGCCTTCCACTCAGTTGCTGATGCTTTGTCTCCAGAGAATTTATCTTTAACCA
GACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCATCATGTGATATGAAAAGAAGCATGA
TTTTTTTTCCTGTAAGTTACATCATGAGCAGTGGAAGGTTTTCTTCTCGTTGTAAATATTGTGA
ACAGGACTTCCAGCGCACACACCGAAGAATGCGGCCACACCCTTCCTAGACAACTAACACGTGT
CCTTGGATGAACGGTGCCCAAGTTTGTTTTGCTGTCCTCTTGACTGGATCTGTCACAAGCCAGC
TTGGGGTCCCTCGGCACTTTGCCCCGATTTCAGCTTTTAAGACATTTGGATCCTGAGTAACAGA
TACCATTGAATTGCTGTAAAAGTAGGGTGATGAGCTCGGGTTTCAGTCTTTCCTAACAGCGAGC
CTGTTGGACAAAACTCGCAGCTGGCGTTGGTACAGACACCAGCCACCCGTTTTCCTCGGCGAGC
TCTCTGACGCGTGGACACCGGCTCACGTCTACAGCTGTTTGGGGTGCTGGGCAAAGGAGAACTT
TAAAATTGATAGAAAACTAAAATTGAGGAATTAAAATCAAGCAAAAAAAAATAGCCTTTCTTTT
CAGATGGTTCTTTTCAGGTGGTTTTCAGACTGGTTATTTTAAAAAAAGAGATTAACAGAGTCAC
GATGCATTCGGGATGGAACGTATTTCAAACTTCTGCCTTACATTGTACAATGCAGCTAGAGAAT
TAAAGTGTACTATGCCATTCTCTCTACCCACACCTGAAAAGTGAAATATTCCTACAGTTTCCAC
CCCTAGTTTGATACCGAGCTAATATGCAATTTAGAGCTGAGGAAATGTTCTTTATGTCTCTGTC
GCACACTAGATTATTTTCCACCTGCACTGCGTGGTTCTTGTTAGTTCTCTTCCTGGAGACAAGT
GTGTGCTCCTGGAATCCCCTCGCTGCCCCAACCTCCCTCTGTGCTCCTATGTCCAGGAAGCTGT
CTGTCCATCATATACTGTCCATGGCAACGAGTTTTAAGTTGTCATTCTCCTGAATTTACGTGTT
TAATGTTAGAAATGTGTTAAGACCTGACTAGAAGATGTGTTTTTAAACTTCTGTTTTCCCATTT
TACTTTCAAAGATTTAATTTTTTTTCCTATCAGAGCAAAATATACTCAGAAATGATGGGTTTCC
TGACAGTGTCTCCCATGTATCAGTTTCCTGCCTCTTTTTTATGTAGCTAAGGAACCTAACCGTA
AGCACATACAACTTTAGACTCTCTTGGCCTTGTTGTTTAAAAGGTCATCTTACTTGTGTTGTTT
ATGTTTAATGTCAGAACCAATATCCAGTTATAAAATAGTGCTTTTTTTTTTAACCTTGCTCTGT
ACCTGTCAGAACAGTCTGCACGGTGTGATCACGTTTGAGCCTTACATGGTAGGAAAGGCACTAA
ACAAACTGAAGGAATGAGAACACAGGGCACCAAAAGCTAAAGAAGTGGCTTAGGATGCCACCGA
AGTCCATGAGAGCCGGGATCACGACCCACATCTCGAAACTTTTACCACATTTTATCTCCTCCCT
GCAATCAGGAGGACCCTTCACAAATGGCTCTGGGGCCATGCAGAGAACAGAAGTACAGTCAGGC
GACCTCAGAGTTCCCGAGTGAATTAGGAAAGTGTCCACTTTATCTACCCAGCGGCACTTACTGT
AAGACCATTGTCTTTTCTCGGTCCAGGACTGTGTTCCTCAAATGTGTCACAGAGGAAGAATATC
TGTCCTCAGCAGCCTGGTCCCATCTCAGACTTCCCCGAGATCATTACCTGTGGTAGGAACATTC
CCACCTGTGGCCCTCACCAGTGCAGATTGTGGTGGGGTGACAGGCGGTGGGAGGTGGAGAAGCT
GGATTGTCCACCGGCGTCCTGACTTTACAGGAAAAGCAATGTTGCTTGAGAAGGGGTTATGCTT
GGTGCCGGCTTGCACGCTAGCTGAAGTAACGGGTGCCATCTGAGACTTTCTGCATACCGGAAAC
CTTACTGTGCCAGAGAAAAACCGTTTAGAATCCGTCCTCGTGGTCTCTTACTTTGATCTGTTTC
TTCTCCACAGCAGAAGGTTTTAGAGCACGCAGCTTCAAAACTCTGAAGAGTCCACGTTTCTATA
GGCGGTCTCACCCAAACCCCTTTGGTTTTTTTTTTTAAGACATGTCTGTTTGTTTTCAGGATCA
AGAAGACTGAGCTAGCTTTAAAGAGCAAACCGATTTATATATGCAATTTTAAGATGCAGTTAAG
ATGAATGATAGCCTTTTGCAAGTGAAATGCTTTTACTGCACATTTTCTGTTTTGGGAATAGCTT
TGTGTTCTAAGTGCAGGTTGATTTTTTTTTTTTGTAAAATTATGTTAAACAATATGTTCAGATC
CTTTCTGCCATGGCCAAAAAAGTATGTATGGAAGTGTGTTTGTATCCGTCTGTGAGAGGAGGCC
GATGTTTTACCTGAGGTCTTTGTGATACTTCGGTTATCTATGCATTCTTTCTCTGTGATTCGGT
AAACAGGCGGCCATGTTCACGATGCCTTGTGTGTCTTATCTTTTTCTTTTTTTAAATTAACCTG
TTAAATACAGCTTGAAATATTTTTATTTTATTTATTCTGTTTTTACTGAAATATACTGCATTCC
TGTGTTACTGTACTATCTTTGCTGGGTATGATGTCTGTGTATCCAGGTCTCACTTAAGTAACCC
AGTGAACTCTACGTCATCTAGAAAGTGGTTCTGTAACGATTGGCAGTCACATGGTTCTGTAACA
GTTGGCAGTCACATCTCTGTTGGAATATGTAGGAAAGAAGTTAACCCTTAAAGTTCTTTTTATT
TTTTACAAGCAGCTAGACAGATGTGCCCTCACCACCTTATCCGCATGCTCCTTGGAAGCGTTGA
GGGGGCAGCCGACATGCCGTCTGGCGGAGAACTTTACTTTGTAGACAAAGGCACTGTGGGGCAT
CATTTTTATACCCTTCTCAACACGCGTGATTTCATCCAAAATACACACACAGAGCCACACGCCT
TTGTTTCCACCTGGATTTAAGGCCACCCCTAGCCAATTAGAGCCACTGTTTTGTCTGTCTGTCT
GTCCTACTGCATGAAGGGACATTAGACCCATTTCCATTAAAGCAAATTCTTGGTGATAACTGTT
GGCAGTGCTACTTTTATTGTTTTAATCCACATTAGGGGTTTAAGAAGGACACATAACAAACTAT
TCAAACTGGACCTCTTAACTTGTAGCCCCAAACTCCCCTTAATGTGTGGTATATTCAATTTGTG
AGCATTTCAACACAAGACTTCAGAAGCCACATGTCTCCCTGACATTAGCACAATTTAATGAAAC
TGAAAGCTCTCTAGTCGGCCCGGTTTAACCTAATATCTGACGTGTTTATAGCCAGTAAGAGAGT
AATTGAGCTTGTTTCGGCATACTGGTGGTATGGCCCAGTGGTATAGCTCTTACACCACCTGTGC
AGGGATCGGAGTTTAGCCCCTGGAGAGGACAGGAGGAGAGGTTGGCACTTCAAGGCTGTGAAGA
CATCTCCAGGCGGCCACATCGGCCGCTTCCTCCTGAGAGGACATCTCATTTCTTTGCGTTGCCG
TTTGCTGTGGACCACGTTTACACGTTTACATGTAAAATGTCGTGGGAATAAATGTAGCTGCATA
AAAGCATTCTCGTTGATCTGATAGCCAGGCCACATATATAAGAAACACATACAAATTTAGTGTC
TCTTCGGTAATTTTATTTTTTGTATTCTTACTTCAAATTAAACTTTTTTTTT

hide sequence

RefSeq Acc Id:

XM_039092527 ⟹ XP_038948455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,746 - 42,232,930 (+)	NCBI
mRatBN7.2	14	41,557,931 - 41,877,374 (+)	NCBI

RefSeq Acc Id:

XM_039092530 ⟹ XP_038948458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,746 - 42,232,930 (+)	NCBI
mRatBN7.2	14	41,557,931 - 41,877,374 (+)	NCBI

RefSeq Acc Id:

XM_039092531 ⟹ XP_038948459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,746 - 42,232,930 (+)	NCBI
mRatBN7.2	14	41,557,931 - 41,877,374 (+)	NCBI

RefSeq Acc Id:

XM_039092532 ⟹ XP_038948460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,746 - 42,232,930 (+)	NCBI
mRatBN7.2	14	41,557,928 - 41,877,374 (+)	NCBI

RefSeq Acc Id:

XM_063273102 ⟹ XP_063129172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,986,803 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273103 ⟹ XP_063129173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,758 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273104 ⟹ XP_063129174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,758 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273105 ⟹ XP_063129175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,849,638 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273106 ⟹ XP_063129176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,912,342 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273107 ⟹ XP_063129177

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,758 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273108 ⟹ XP_063129178

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,758 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273109 ⟹ XP_063129179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,758 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273110 ⟹ XP_063129180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,052,180 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273111 ⟹ XP_063129181

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,746 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273112 ⟹ XP_063129182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,759 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273113 ⟹ XP_063129183

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,746 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273114 ⟹ XP_063129184

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,849,638 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273115 ⟹ XP_063129185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,911,746 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273116 ⟹ XP_063129186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,106,482 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273117 ⟹ XP_063129187

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,106,482 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273119 ⟹ XP_063129189

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,115,587 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273120 ⟹ XP_063129190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,109,925 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273121 ⟹ XP_063129191

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,209,281 - 42,232,930 (+)	NCBI

RefSeq Acc Id:

XM_063273122 ⟹ XP_063129192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,208,256 - 42,232,930 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414394	(Get FASTA)	NCBI Sequence Viewer
	XP_017454946	(Get FASTA)	NCBI Sequence Viewer
	XP_038948455	(Get FASTA)	NCBI Sequence Viewer
	XP_038948458	(Get FASTA)	NCBI Sequence Viewer
	XP_038948459	(Get FASTA)	NCBI Sequence Viewer
	XP_038948460	(Get FASTA)	NCBI Sequence Viewer
	XP_063129172	(Get FASTA)	NCBI Sequence Viewer
	XP_063129173	(Get FASTA)	NCBI Sequence Viewer
	XP_063129174	(Get FASTA)	NCBI Sequence Viewer
	XP_063129175	(Get FASTA)	NCBI Sequence Viewer
	XP_063129176	(Get FASTA)	NCBI Sequence Viewer
	XP_063129177	(Get FASTA)	NCBI Sequence Viewer
	XP_063129178	(Get FASTA)	NCBI Sequence Viewer
	XP_063129179	(Get FASTA)	NCBI Sequence Viewer
	XP_063129180	(Get FASTA)	NCBI Sequence Viewer
	XP_063129181	(Get FASTA)	NCBI Sequence Viewer
	XP_063129182	(Get FASTA)	NCBI Sequence Viewer
	XP_063129183	(Get FASTA)	NCBI Sequence Viewer
	XP_063129184	(Get FASTA)	NCBI Sequence Viewer
	XP_063129185	(Get FASTA)	NCBI Sequence Viewer
	XP_063129186	(Get FASTA)	NCBI Sequence Viewer
	XP_063129187	(Get FASTA)	NCBI Sequence Viewer
	XP_063129189	(Get FASTA)	NCBI Sequence Viewer
	XP_063129190	(Get FASTA)	NCBI Sequence Viewer
	XP_063129191	(Get FASTA)	NCBI Sequence Viewer
	XP_063129192	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL90042	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000082727
	ENSRNOP00000082727.2
	ENSRNOP00000084619
	ENSRNOP00000084619.2
	ENSRNOP00000088203
	ENSRNOP00000088203.1

RefSeq Acc Id:	XP_017454946 ⟸ XM_017599457
- Peptide Label:	isoform X14
- UniProtKB:	F1LZU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAERKNAKALACSSLQERTNMSLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDRPVGMDTLNSA IENLMTSSSKEDWPSVNMNVADATVTVINEKNEEEILVECRVRFLSFMGVGKDVHTFAFIMDTG NQRFECHVFWCEPNAANVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPADSVTRRVTTNVKRG VLSLIDTLKQKRPVTETP hide sequence

Ensembl Acc Id:

ENSRNOP00000041399 ⟸ ENSRNOT00000050664

RefSeq Acc Id:	XP_038948460 ⟸ XM_039092532
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZYC7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948455 ⟸ XM_039092527
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G7S6 (UniProtKB/TrEMBL), A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948458 ⟸ XM_039092530
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZYC7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948459 ⟸ XM_039092531
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZYC7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000082727 ⟸ ENSRNOT00000100119

Ensembl Acc Id:

ENSRNOP00000084619 ⟸ ENSRNOT00000115068

Ensembl Acc Id:

ENSRNOP00000088203 ⟸ ENSRNOT00000106751

Ensembl Acc Id:

ENSRNOP00000084452 ⟸ ENSRNOT00000119030

RefSeq Acc Id:	XP_063129175 ⟸ XM_063273105
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G7S6 (UniProtKB/TrEMBL), A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129184 ⟸ XM_063273114
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZYC7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129181 ⟸ XM_063273111
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129185 ⟸ XM_063273115
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZYC7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129183 ⟸ XM_063273113
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129174 ⟸ XM_063273104
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G7S6 (UniProtKB/TrEMBL), A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129173 ⟸ XM_063273103
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G7S6 (UniProtKB/TrEMBL), A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129178 ⟸ XM_063273108
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G7S6 (UniProtKB/TrEMBL), A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129177 ⟸ XM_063273107
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G7S6 (UniProtKB/TrEMBL), A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129179 ⟸ XM_063273109
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G7S6 (UniProtKB/TrEMBL), A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129182 ⟸ XM_063273112
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414394 ⟸ NM_001427465
- UniProtKB:	A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129176 ⟸ XM_063273106
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G7S6 (UniProtKB/TrEMBL), A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129172 ⟸ XM_063273102
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G7S6 (UniProtKB/TrEMBL), A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129180 ⟸ XM_063273110
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G7S6 (UniProtKB/TrEMBL), A0A8I6A9I8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129186 ⟸ XM_063273116
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063129187 ⟸ XM_063273117
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063129190 ⟸ XM_063273120
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063129189 ⟸ XM_063273119
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063129192 ⟸ XM_063273122
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063129191 ⟸ XM_063273121
- Peptide Label:	isoform X13

Protein Domains

PID WW

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LZU7-F1-model_v2	AlphaFold	F1LZU7	1-210	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562438	AgrOrtholog
BioCyc Gene	G2FUF-15765	BioCyc
Ensembl Genes	ENSRNOG00000025509	Ensembl
	ENSRNOG00000063717	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000100119	ENTREZGENE
	ENSRNOT00000100119.2	UniProtKB/TrEMBL
	ENSRNOT00000106751	ENTREZGENE
	ENSRNOT00000106751.2	UniProtKB/TrEMBL
	ENSRNOT00000115068	ENTREZGENE
	ENSRNOT00000115068.2	UniProtKB/TrEMBL
Gene3D-CATH	2.20.70.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
InterPro	APBB1/2/3	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	PTB/PI_dom	UniProtKB/TrEMBL
	WW_dom	UniProtKB/TrEMBL
	WW_dom_sf	UniProtKB/TrEMBL
NCBI Gene	305338	ENTREZGENE
PANTHER	AMYLOID-BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B MEMBER 2	UniProtKB/TrEMBL
	PTHR14058	UniProtKB/TrEMBL
Pfam	PF00397	UniProtKB/TrEMBL
	PID	UniProtKB/TrEMBL
PhenoGen	Apbb2	PhenoGen
PROSITE	PID	UniProtKB/TrEMBL
	WW_DOMAIN_1	UniProtKB/TrEMBL
	WW_DOMAIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000025509	RatGTEx
	ENSRNOG00000063717	RatGTEx
SMART	PTB	UniProtKB/TrEMBL
	SM00456	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF51045	UniProtKB/TrEMBL
UniProt	A0A8I5ZYC7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A9I8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G7S6	ENTREZGENE, UniProtKB/TrEMBL
	A6JDC0_RAT	UniProtKB/TrEMBL
	F1LZU7	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Apbb2	amyloid beta precursor protein binding family B member 2	Apbb2	amyloid beta precursor protein binding family B member 2	Data merged from RGD:149736493	737654	PROVISIONAL
2021-08-09	Apbb2	amyloid beta precursor protein binding family B member 2			Symbol and Name status set to provisional	45752	PROVISIONAL
2016-01-27	Apbb2	amyloid beta precursor protein binding family B member 2	Apbb2	amyloid beta (A4) precursor protein-binding, family B, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-29	Apbb2	amyloid beta (A4) precursor protein-binding, family B, member 2	RGD1562438_predicted	similar to amyloid beta (A4) precursor protein-binding, family B, member 2 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562438_predicted	similar to amyloid beta (A4) precursor protein-binding, family B, member 2 (predicted)	LOC305338	similar to amyloid beta (A4) precursor protein-binding, family B, member 2	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC305338	similar to amyloid beta (A4) precursor protein-binding, family B, member 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD