Zc4h2 (zinc finger C4H2-type containing) - Rat Genome Database

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Gene: Zc4h2 (zinc finger C4H2-type containing) Rattus norvegicus
Analyze
Symbol: Zc4h2
Name: zinc finger C4H2-type containing
RGD ID: 1561708
Description: Predicted to be involved in nervous system development and positive regulation of neuron differentiation. Predicted to act upstream of or within noradrenergic neuron development and protein monoubiquitination. Predicted to be located in cytoplasm; neuronal cell body; and postsynaptic membrane. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Wieacker-Wolff syndrome and female-restricted Wieacker-Wolff syndrome. Orthologous to human ZC4H2 (zinc finger C4H2-type containing); INTERACTS WITH (+)-schisandrin B; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC367838; RGD1561708; similar to cDNA sequence AK129302; zinc finger C4H2 domain-containing protein; zinc finger, C4H2 domain containing
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X64,525,725 - 64,556,037 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX64,535,241 - 64,556,042 (-)EnsemblGRCr8
mRatBN7.2X60,525,706 - 60,546,519 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX60,525,712 - 60,546,488 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX61,999,700 - 62,020,457 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X65,500,218 - 65,520,972 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X63,075,039 - 63,095,749 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X64,887,978 - 64,908,682 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX64,887,978 - 64,908,682 (-)Ensemblrn6Rnor6.0
Rnor_5.0X68,162,942 - 68,183,409 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X83,218,586 - 83,239,333 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX60,944,104 - 60,964,705 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23623388   PMID:26056227  


Genomics

Comparative Map Data
Zc4h2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X64,525,725 - 64,556,037 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX64,535,241 - 64,556,042 (-)EnsemblGRCr8
mRatBN7.2X60,525,706 - 60,546,519 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX60,525,712 - 60,546,488 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX61,999,700 - 62,020,457 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X65,500,218 - 65,520,972 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X63,075,039 - 63,095,749 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X64,887,978 - 64,908,682 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX64,887,978 - 64,908,682 (-)Ensemblrn6Rnor6.0
Rnor_5.0X68,162,942 - 68,183,409 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X83,218,586 - 83,239,333 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX60,944,104 - 60,964,705 (-)NCBICelera
Cytogenetic MapXq22NCBI
ZC4H2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X64,915,807 - 65,034,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX64,915,802 - 65,034,713 (-)Ensemblhg38GRCh38
GRCh37X64,135,687 - 64,254,621 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X64,052,986 - 64,113,061 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X63,919,282 - 63,979,357NCBI
CeleraX64,483,059 - 64,601,403 (-)NCBICelera
Cytogenetic MapXq11.2NCBI
HuRefX57,960,742 - 58,079,091 (-)NCBIHuRef
CHM1_1X64,028,323 - 64,147,256 (-)NCBICHM1_1
T2T-CHM13v2.0X63,341,227 - 63,460,162 (-)NCBIT2T-CHM13v2.0
Zc4h2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X94,682,793 - 94,702,115 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX94,682,799 - 94,702,115 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X95,639,187 - 95,658,509 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX95,639,193 - 95,658,509 (-)Ensemblmm10GRCm38
MGSCv37X92,834,536 - 92,853,771 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X91,841,916 - 91,861,151 (-)NCBIMGSCv36mm8
CeleraX82,667,417 - 82,680,548 (-)NCBICelera
Celera197,944,160 - 7,945,624 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.99NCBI
Zc4h2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554754,568,005 - 4,604,577 (-)Ensembl
ChiLan1.0NW_0049554754,569,263 - 4,604,571 (-)NCBIChiLan1.0ChiLan1.0
ZC4H2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X64,452,130 - 64,570,456 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X64,455,735 - 64,574,061 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X54,043,329 - 54,162,351 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X64,121,109 - 64,182,331 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX64,121,109 - 64,182,331 (-)EnsemblpanPan2panpan1.1
ZC4H2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X49,783,962 - 49,852,098 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX49,785,291 - 49,852,006 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX40,628,882 - 40,690,596 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X50,738,645 - 50,800,384 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX50,738,651 - 50,800,396 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X48,721,165 - 48,782,888 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X50,055,070 - 50,123,217 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X49,961,040 - 50,029,199 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zc4h2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X52,114,733 - 52,188,253 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366352,924,601 - 2,953,854 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366352,924,632 - 2,954,003 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC4H2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX51,157,105 - 51,193,980 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X51,157,102 - 51,193,993 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X57,673,573 - 57,747,051 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZC4H2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X54,972,144 - 55,079,158 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX54,973,545 - 55,021,891 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660832,258,152 - 2,365,582 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zc4h2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248982,369,731 - 2,417,996 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248982,370,025 - 2,417,996 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Zc4h2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13169,344,196 - 169,445,806 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zc4h2
129 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:341
Count of miRNA genes:222
Interacting mature miRNAs:267
Transcripts:ENSRNOT00000007486
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X6103585667175160Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat

Markers in Region
DXRat30  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X64,539,872 - 64,540,085 (+)Marker Load Pipeline
mRatBN7.2X60,530,347 - 60,530,562 (+)MAPPERmRatBN7.2
Rnor_6.0X64,892,610 - 64,892,822NCBIRnor6.0
Rnor_5.0X68,167,574 - 68,167,786UniSTSRnor5.0
RGSC_v3.4X83,223,186 - 83,223,431RGDRGSC3.4
RGSC_v3.4X83,223,218 - 83,223,430UniSTSRGSC3.4
CeleraX60,948,618 - 60,948,830UniSTS
RGSC_v3.1X83,296,478 - 83,296,723RGD
SHRSP x BN MapX17.21RGD
SHRSP x BN MapX17.21UniSTS
FHH x ACI MapX22.2799RGD
Cytogenetic MapXq31UniSTS
RH130151  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X60,525,902 - 60,526,095 (+)MAPPERmRatBN7.2
Rnor_6.0X64,888,165 - 64,888,357NCBIRnor6.0
Rnor_5.0X68,163,129 - 68,163,321UniSTSRnor5.0
RGSC_v3.4X83,218,773 - 83,218,965UniSTSRGSC3.4
CeleraX60,944,291 - 60,944,483UniSTS
Cytogenetic MapXq31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000084107   ⟹   ENSRNOP00000072405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX64,535,241 - 64,556,042 (-)Ensembl
mRatBN7.2 EnsemblX60,525,712 - 60,546,488 (-)Ensembl
Rnor_6.0 EnsemblX64,887,978 - 64,908,682 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096744   ⟹   ENSRNOP00000089169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX60,525,712 - 60,531,903 (-)Ensembl
RefSeq Acc Id: NM_001126374   ⟹   NP_001119846
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X64,535,241 - 64,555,960 (-)NCBI
mRatBN7.2X60,525,716 - 60,546,438 (-)NCBI
Rnor_6.0X64,887,978 - 64,908,682 (-)NCBI
Rnor_5.0X68,162,942 - 68,183,409 (-)NCBI
RGSC_v3.4X83,218,586 - 83,239,333 (-)RGD
CeleraX60,944,104 - 60,964,705 (-)RGD
Sequence:
RefSeq Acc Id: XM_039099948   ⟹   XP_038955876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X64,535,237 - 64,556,029 (-)NCBI
mRatBN7.2X60,525,706 - 60,546,510 (-)NCBI
RefSeq Acc Id: XM_039099949   ⟹   XP_038955877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X64,535,237 - 64,556,027 (-)NCBI
mRatBN7.2X60,525,706 - 60,546,508 (-)NCBI
RefSeq Acc Id: XM_039099950   ⟹   XP_038955878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X64,538,055 - 64,556,037 (-)NCBI
mRatBN7.2X60,528,530 - 60,546,519 (-)NCBI
RefSeq Acc Id: XM_063280180   ⟹   XP_063136250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X64,525,725 - 64,556,030 (-)NCBI
RefSeq Acc Id: XM_063280181   ⟹   XP_063136251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X64,525,725 - 64,556,027 (-)NCBI
RefSeq Acc Id: XM_063280182   ⟹   XP_063136252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X64,535,237 - 64,556,035 (-)NCBI
RefSeq Acc Id: NP_001119846   ⟸   NM_001126374
- UniProtKB: B1WC48 (UniProtKB/TrEMBL),   A0A8I6ABD4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072405   ⟸   ENSRNOT00000084107
RefSeq Acc Id: XP_038955876   ⟸   XM_039099948
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ABD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955877   ⟸   XM_039099949
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ABD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955878   ⟸   XM_039099950
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000089169   ⟸   ENSRNOT00000096744
RefSeq Acc Id: XP_063136250   ⟸   XM_063280180
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ABD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136251   ⟸   XM_063280181
- Peptide Label: isoform X2
- UniProtKB: B1WC48 (UniProtKB/TrEMBL),   A0A8I6ABD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136252   ⟸   XM_063280182
- Peptide Label: isoform X5
Protein Domains
C4H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC48-F1-model_v2 AlphaFold B1WC48 1-224 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701848
Promoter ID:EPDNEW_R12372
Type:initiation region
Name:Zc4h2_1
Description:zinc finger C4H2-type containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X64,908,718 - 64,908,778EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561708 AgrOrtholog
BioCyc Gene G2FUF-2205 BioCyc
Ensembl Genes ENSRNOG00000056735 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084107 ENTREZGENE
  ENSRNOT00000084107.3 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9088857 IMAGE-MGC_LOAD
InterPro ZF_C4H2 UniProtKB/TrEMBL
  Znf-C4H2 UniProtKB/TrEMBL
KEGG Report rno:367838 UniProtKB/TrEMBL
MGC_CLONE MGC:187855 IMAGE-MGC_LOAD
NCBI Gene 367838 ENTREZGENE
PANTHER PTHR31058 UniProtKB/TrEMBL
  ZINC FINGER C4H2 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam zf-C4H2 UniProtKB/TrEMBL
PhenoGen Zc4h2 PhenoGen
PROSITE ZF_C4H2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056735 RatGTEx
UniProt A0A0G2K2W7_RAT UniProtKB/TrEMBL
  A0A8I6ABD4 ENTREZGENE
  B1WC48 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Zc4h2  zinc finger C4H2-type containing  Zc4h2  zinc finger, C4H2 domain containing  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-04 Zc4h2  zinc finger, C4H2 domain containing  RGD1561708  similar to cDNA sequence AK129302   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561708  similar to cDNA sequence AK129302   RGD1561708_predicted  similar to cDNA sequence AK129302 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561708_predicted  similar to cDNA sequence AK129302 (predicted)  LOC367838  similar to cDNA sequence AK129302  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC367838  similar to cDNA sequence AK129302      Symbol and Name status set to provisional 70820 PROVISIONAL