Matcap2 (microtubule associated tyrosine carboxypeptidase 2) - Rat Genome Database

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Gene: Matcap2 (microtubule associated tyrosine carboxypeptidase 2) Rattus norvegicus
Analyze
Symbol: Matcap2
Name: microtubule associated tyrosine carboxypeptidase 2
RGD ID: 1561444
Description: Predicted to enable carboxypeptidase activity and metallopeptidase activity. Predicted to be involved in proteolysis. Orthologous to human MATCAP2 (microtubule associated tyrosine carboxypeptidase 2); INTERACTS WITH bisphenol A; 2,3,7,8-tetrachlorodibenzodioxine (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AABR07069466.1; LOC315473; putative tyrosine carboxypeptidase MATCAP2; RGD1561444; similar to RIKEN cDNA 9530077C05; uncharacterized protein KIAA0895 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8829,197,154 - 29,247,056 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl829,196,927 - 29,247,058 (+)EnsemblGRCr8
mRatBN7.2820,921,637 - 20,971,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,921,244 - 20,971,069 (+)EnsemblmRatBN7.2
Rnor_6.0823,397,177 - 23,446,617 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,398,030 - 23,446,606 (+)NCBIrn6Rnor6.0
Rnor_5.0823,466,229 - 23,498,794 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4821,729,863 - 21,771,522 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera822,307,691 - 22,357,087 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Matcap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8829,197,154 - 29,247,056 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl829,196,927 - 29,247,058 (+)EnsemblGRCr8
mRatBN7.2820,921,637 - 20,971,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,921,244 - 20,971,069 (+)EnsemblmRatBN7.2
Rnor_6.0823,397,177 - 23,446,617 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,398,030 - 23,446,606 (+)NCBIrn6Rnor6.0
Rnor_5.0823,466,229 - 23,498,794 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4821,729,863 - 21,771,522 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera822,307,691 - 22,357,087 (+)NCBICelera
Cytogenetic Map8q13NCBI
MATCAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38736,324,152 - 36,390,357 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl736,324,152 - 36,390,125 (-)Ensemblhg38GRCh38
GRCh37736,363,761 - 36,429,966 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36736,330,284 - 36,396,259 (-)NCBIBuild 36Build 36hg18NCBI36
Celera736,348,324 - 36,414,291 (-)NCBICelera
Cytogenetic Map7p14.2NCBI
HuRef736,244,492 - 36,310,031 (-)NCBIHuRef
CHM1_1736,363,349 - 36,429,306 (-)NCBICHM1_1
T2T-CHM13v2.0736,465,400 - 36,531,625 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2736,401,769 - 36,467,734 (-)NCBI
Matcap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39922,299,849 - 22,355,980 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl922,322,809 - 22,355,977 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38922,388,559 - 22,444,684 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl922,411,513 - 22,444,681 (+)Ensemblmm10GRCm38
MGSCv37922,216,021 - 22,249,125 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36922,161,979 - 22,195,083 (+)NCBIMGSCv36mm8
Celera919,681,858 - 19,715,000 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map99.14NCBI
Matcap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554607,058,059 - 7,088,307 (+)Ensembl
ChiLan1.0NW_0049554607,058,225 - 7,088,307 (+)NCBIChiLan1.0ChiLan1.0
MATCAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2641,142,805 - 41,208,781 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1789,467,464 - 89,533,520 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0736,945,774 - 37,011,771 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1737,176,246 - 37,241,779 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl737,176,246 - 37,241,779 (-)EnsemblpanPan2panpan1.1
MATCAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11447,744,487 - 47,805,364 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1447,747,024 - 47,805,339 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1447,188,020 - 47,248,913 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01447,685,599 - 47,746,739 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1447,688,141 - 47,747,458 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11447,792,600 - 47,853,491 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01447,470,137 - 47,532,441 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01447,843,940 - 47,905,523 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Matcap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511892,597,138 - 92,645,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647811,808,815 - 11,857,229 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647811,808,869 - 11,857,194 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MATCAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1837,708,101 - 37,793,056 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11837,714,857 - 37,793,059 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21841,370,675 - 41,438,056 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MATCAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12122,122,467 - 22,164,425 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2122,132,684 - 22,165,038 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666062226,747 - 274,600 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Matcap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474024,853,404 - 24,888,890 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474024,853,285 - 24,889,645 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Matcap2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1818,624,977 - 18,656,425 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Matcap2
537 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:59
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000031893, ENSRNOT00000073621
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8132882639Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat

Markers in Region
BI289672  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2820,957,094 - 20,957,277 (+)MAPPERmRatBN7.2
Rnor_6.0823,432,634 - 23,432,816NCBIRnor6.0
Rnor_5.0823,484,811 - 23,484,993UniSTSRnor5.0
RGSC_v3.4821,757,544 - 21,757,726UniSTSRGSC3.4
Celera822,343,148 - 22,343,330UniSTS
RH 3.4 Map8206.01UniSTS
Cytogenetic Map8q13UniSTS
BE112541  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2820,921,945 - 20,922,101 (+)MAPPERmRatBN7.2
Rnor_6.0823,397,488 - 23,397,643NCBIRnor6.0
Rnor_5.0823,449,665 - 23,449,820UniSTSRnor5.0
RGSC_v3.4821,722,398 - 21,722,553UniSTSRGSC3.4
Celera822,308,002 - 22,308,157UniSTS
RH 3.4 Map1963.51UniSTS
Cytogenetic Map8q13UniSTS
BE109862  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2820,970,833 - 20,970,983 (+)MAPPERmRatBN7.2
Rnor_6.0823,446,373 - 23,446,522NCBIRnor6.0
Rnor_5.0823,498,550 - 23,498,699UniSTSRnor5.0
RGSC_v3.4821,771,283 - 21,771,432UniSTSRGSC3.4
Celera822,356,843 - 22,356,992UniSTS
RH 3.4 Map8204.3UniSTS
Cytogenetic Map8q13UniSTS
AI411572  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2820,922,459 - 20,922,610 (+)MAPPERmRatBN7.2
Rnor_6.0823,398,002 - 23,398,152NCBIRnor6.0
Rnor_5.0823,450,179 - 23,450,329UniSTSRnor5.0
RGSC_v3.4821,722,912 - 21,723,062UniSTSRGSC3.4
Celera822,308,516 - 22,308,666UniSTS
RH 3.4 Map8207.81UniSTS
Cytogenetic Map8q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 46 57 128 85 10 45 36 32 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001077807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_235936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000031893   ⟹   ENSRNOP00000033075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl829,197,632 - 29,247,052 (+)Ensembl
mRatBN7.2 Ensembl820,921,244 - 20,971,069 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105037   ⟹   ENSRNOP00000094279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl829,196,927 - 29,247,058 (+)Ensembl
mRatBN7.2 Ensembl820,921,244 - 20,971,069 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111441   ⟹   ENSRNOP00000097639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl829,214,509 - 29,247,051 (+)Ensembl
mRatBN7.2 Ensembl820,936,634 - 20,971,069 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112125   ⟹   ENSRNOP00000088769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl829,214,509 - 29,247,051 (+)Ensembl
mRatBN7.2 Ensembl820,940,958 - 20,971,069 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000132171   ⟹   ENSRNOP00000112781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl829,216,948 - 29,247,052 (+)Ensembl
RefSeq Acc Id: NM_001427636   ⟹   NP_001414565
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,216,998 - 29,247,056 (+)NCBI
RefSeq Acc Id: XM_006242701   ⟹   XP_006242763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,199 - 29,247,056 (+)NCBI
mRatBN7.2820,938,309 - 20,971,076 (+)NCBI
Rnor_6.0823,412,037 - 23,446,617 (+)NCBI
Rnor_5.0823,466,229 - 23,498,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242702   ⟹   XP_006242764
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,186 - 29,247,056 (+)NCBI
mRatBN7.2820,938,306 - 20,971,076 (+)NCBI
Rnor_6.0823,411,835 - 23,446,612 (+)NCBI
Rnor_5.0823,466,229 - 23,498,794 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766018   ⟹   XP_008764240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,204 - 29,247,056 (+)NCBI
mRatBN7.2820,938,311 - 20,971,076 (+)NCBI
Rnor_6.0823,412,037 - 23,446,617 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595980   ⟹   XP_017451469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,197,154 - 29,247,056 (+)NCBI
mRatBN7.2820,924,187 - 20,971,076 (+)NCBI
Rnor_6.0823,399,707 - 23,446,617 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063265342   ⟹   XP_063121412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,197,154 - 29,247,056 (+)NCBI
RefSeq Acc Id: XM_063265343   ⟹   XP_063121413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,197,154 - 29,247,056 (+)NCBI
RefSeq Acc Id: XM_063265344   ⟹   XP_063121414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,197,154 - 29,247,056 (+)NCBI
RefSeq Acc Id: XM_063265345   ⟹   XP_063121415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,197,154 - 29,247,056 (+)NCBI
RefSeq Acc Id: XM_063265346   ⟹   XP_063121416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,197,154 - 29,247,056 (+)NCBI
RefSeq Acc Id: XM_063265347   ⟹   XP_063121417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,219,486 - 29,247,056 (+)NCBI
RefSeq Acc Id: XM_063265348   ⟹   XP_063121418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,197,154 - 29,247,056 (+)NCBI
RefSeq Acc Id: XM_063265349   ⟹   XP_063121419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,199 - 29,247,056 (+)NCBI
RefSeq Acc Id: XM_063265350   ⟹   XP_063121420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,166 - 29,239,604 (+)NCBI
RefSeq Acc Id: XM_063265351   ⟹   XP_063121421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,161 - 29,239,604 (+)NCBI
RefSeq Acc Id: XM_063265352   ⟹   XP_063121422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,196 - 29,247,056 (+)NCBI
RefSeq Acc Id: XM_235936   ⟹   XP_235936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,199 - 29,247,056 (+)NCBI
mRatBN7.2820,938,309 - 20,971,076 (+)NCBI
Rnor_6.0823,411,840 - 23,446,617 (+)NCBI
Rnor_5.0823,466,229 - 23,498,794 (+)NCBI
RGSC_v3.4821,729,863 - 21,771,522 (+)RGD
Sequence:
RefSeq Acc Id: XR_005487991
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,199 - 29,247,056 (+)NCBI
mRatBN7.2820,938,309 - 20,971,076 (+)NCBI
RefSeq Acc Id: XR_010053957
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,204 - 29,247,056 (+)NCBI
RefSeq Acc Id: XR_010053958
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8829,210,199 - 29,247,056 (+)NCBI
RefSeq Acc Id: XP_235936   ⟸   XM_235936
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006242764   ⟸   XM_006242702
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006242763   ⟸   XM_006242701
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008764240   ⟸   XM_008766018
- Peptide Label: isoform X10
- UniProtKB: A0A8I6GM56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451469   ⟸   XM_017595980
- Peptide Label: isoform X11
- Sequence:
Ensembl Acc Id: ENSRNOP00000088769   ⟸   ENSRNOT00000112125
Ensembl Acc Id: ENSRNOP00000033075   ⟸   ENSRNOT00000031893
Ensembl Acc Id: ENSRNOP00000097639   ⟸   ENSRNOT00000111441
Ensembl Acc Id: ENSRNOP00000094279   ⟸   ENSRNOT00000105037
RefSeq Acc Id: XP_063121412   ⟸   XM_063265342
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121416   ⟸   XM_063265346
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063121413   ⟸   XM_063265343
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063121414   ⟸   XM_063265344
- Peptide Label: isoform X5
- UniProtKB: D4ABI4 (UniProtKB/TrEMBL),   A6JP00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121415   ⟸   XM_063265345
- Peptide Label: isoform X7
- UniProtKB: A0A8I6GKN7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121418   ⟸   XM_063265348
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063121421   ⟸   XM_063265351
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063121420   ⟸   XM_063265350
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063121422   ⟸   XM_063265352
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063121419   ⟸   XM_063265349
- Peptide Label: isoform X13
RefSeq Acc Id: NP_001414565   ⟸   NM_001427636
- UniProtKB: A6JP00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121417   ⟸   XM_063265347
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A8H4 (UniProtKB/TrEMBL),   A6JP00 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112781   ⟸   ENSRNOT00000132171

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABI4-F1-model_v2 AlphaFold D4ABI4 1-466 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561444 AgrOrtholog
BioCyc Gene G2FUF-31376 BioCyc
Ensembl Genes ENSRNOG00000026979 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031893 ENTREZGENE
  ENSRNOT00000031893.6 UniProtKB/TrEMBL
  ENSRNOT00000105037 ENTREZGENE
  ENSRNOT00000105037.2 UniProtKB/TrEMBL
  ENSRNOT00000111441 ENTREZGENE
  ENSRNOT00000111441.2 UniProtKB/TrEMBL
  ENSRNOT00000112125 ENTREZGENE
  ENSRNOT00000112125.2 UniProtKB/TrEMBL
  ENSRNOT00000132171 ENTREZGENE
  ENSRNOT00000132171.1 UniProtKB/TrEMBL
InterPro DUF1704 UniProtKB/TrEMBL
NCBI Gene 315473 ENTREZGENE
PANTHER PTHR31817 UniProtKB/TrEMBL
  SI:DKEY-222B8.4 UniProtKB/TrEMBL
Pfam DUF1704 UniProtKB/TrEMBL
PhenoGen Matcap2 PhenoGen
RatGTEx ENSRNOG00000026979 RatGTEx
SMART DUF1704 UniProtKB/TrEMBL
UniProt A0A8I6A8H4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GM56 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M5Q3_RAT UniProtKB/TrEMBL
  A6JP00 ENTREZGENE, UniProtKB/TrEMBL
  D4ABI4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-05 Matcap2  microtubule associated tyrosine carboxypeptidase 2  RGD1561444  similar to RIKEN cDNA 9530077C05  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 RGD1561444  similar to RIKEN cDNA 9530077C05  AABR07069466.1    Data merged from RGD:15003651 737654 PROVISIONAL
2019-11-08 AABR07069466.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1561444  similar to RIKEN cDNA 9530077C05   RGD1561444_predicted  similar to RIKEN cDNA 9530077C05 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561444_predicted  similar to RIKEN cDNA 9530077C05 (predicted)  LOC315473  similar to RIKEN cDNA 9530077C05  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC315473  similar to RIKEN cDNA 9530077C05      Symbol and Name status set to provisional 70820 PROVISIONAL