Ccdc33 (coiled-coil domain containing 33) - Rat Genome Database

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Gene: Ccdc33 (coiled-coil domain containing 33) Rattus norvegicus
Analyze
Symbol: Ccdc33
Name: coiled-coil domain containing 33
RGD ID: 1561126
Description: Predicted to be active in peroxisome. Orthologous to human CCDC33 (coiled-coil domain containing 33); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 33; LOC315712; similar to hypothetical protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8867,331,519 - 67,430,194 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl867,331,519 - 67,413,485 (-)EnsemblGRCr8
mRatBN7.2858,434,798 - 58,534,338 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl858,435,661 - 58,534,370 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx863,966,074 - 64,047,953 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0862,243,628 - 62,325,511 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0860,108,194 - 60,190,076 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0862,809,768 - 62,910,520 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl862,811,173 - 62,893,087 (-)Ensemblrn6Rnor6.0
Rnor_5.0862,586,934 - 62,686,180 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4861,806,805 - 61,888,721 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera857,899,978 - 57,981,440 (-)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
peroxisome  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:20068295  


Genomics

Comparative Map Data
Ccdc33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8867,331,519 - 67,430,194 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl867,331,519 - 67,413,485 (-)EnsemblGRCr8
mRatBN7.2858,434,798 - 58,534,338 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl858,435,661 - 58,534,370 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx863,966,074 - 64,047,953 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0862,243,628 - 62,325,511 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0860,108,194 - 60,190,076 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0862,809,768 - 62,910,520 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl862,811,173 - 62,893,087 (-)Ensemblrn6Rnor6.0
Rnor_5.0862,586,934 - 62,686,180 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4861,806,805 - 61,888,721 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera857,899,978 - 57,981,440 (-)NCBICelera
Cytogenetic Map8q24NCBI
CCDC33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381574,202,999 - 74,336,472 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1574,202,705 - 74,336,472 (+)Ensemblhg38GRCh38
GRCh371574,528,667 - 74,628,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,315,720 - 72,415,535 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1551,477,090 - 51,577,123 (+)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1551,324,495 - 51,424,347 (+)NCBIHuRef
CHM1_11574,646,792 - 74,746,627 (+)NCBICHM1_1
T2T-CHM13v2.01572,084,401 - 72,204,223 (+)NCBIT2T-CHM13v2.0
Ccdc33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39957,935,956 - 58,026,111 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl957,935,960 - 58,026,106 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38958,028,673 - 58,118,823 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,028,677 - 58,118,823 (-)Ensemblmm10GRCm38
MGSCv37957,876,489 - 57,966,630 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36957,826,814 - 57,900,434 (-)NCBIMGSCv36mm8
Celera955,262,985 - 55,353,102 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.63NCBI
Ccdc33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,481,232 - 3,576,771 (-)Ensembl
ChiLan1.0NW_0049554503,485,789 - 3,576,768 (-)NCBIChiLan1.0ChiLan1.0
CCDC33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21663,462,360 - 63,564,080 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11567,625,948 - 67,727,671 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01553,158,057 - 53,278,500 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11572,799,640 - 72,864,897 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1572,800,067 - 72,899,576 (+)EnsemblpanPan2panpan1.1
PanPan1.1 Ensembl1572,800,067 - 72,899,576 (+)NCBIpanPan2panpan1.1
CCDC33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13037,383,918 - 37,473,425 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3037,384,239 - 37,473,339 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3037,319,522 - 37,408,110 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03037,590,971 - 37,679,693 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3037,591,299 - 37,679,237 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13037,543,141 - 37,632,214 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03037,568,919 - 37,657,483 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03037,824,573 - 37,913,268 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,431,872 - 115,518,804 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647133,261,012 - 33,366,796 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647133,261,012 - 33,366,850 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,190,179 - 59,290,877 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1759,188,624 - 59,224,071 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CCDC33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,153,498 - 9,251,614 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048132,431,532 - 132,472,088 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624781299,898 - 388,775 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624781300,173 - 388,634 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc33
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1851,897,208 - 51,996,479 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccdc33
221 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:43
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000058490
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84961020468373388Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat

Markers in Region
D8Mit16  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8867,378,117 - 67,378,345 (+)Marker Load Pipeline
mRatBN7.2858,482,262 - 58,482,492 (+)MAPPERmRatBN7.2
Rnor_6.0862,857,768 - 62,857,995NCBIRnor6.0
Rnor_5.0862,633,766 - 62,633,993UniSTSRnor5.0
RGSC_v3.4861,853,401 - 61,853,629RGDRGSC3.4
RGSC_v3.4861,853,402 - 61,853,629UniSTSRGSC3.4
Celera857,946,126 - 57,946,353UniSTS
RGSC_v3.1861,872,456 - 61,872,683RGD
RH 3.4 Map8682.7UniSTS
RH 3.4 Map8682.7RGD
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 4 15 134 54 53 27 23 27 6 154 59 5 109 50 83 26 14 14

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000058490   ⟹   ENSRNOP00000055287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl867,331,519 - 67,413,485 (-)Ensembl
mRatBN7.2 Ensembl858,435,663 - 58,517,585 (-)Ensembl
Rnor_6.0 Ensembl862,811,173 - 62,893,087 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095328   ⟹   ENSRNOP00000085493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl858,435,661 - 58,534,370 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107812   ⟹   ENSRNOP00000086480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl858,435,661 - 58,534,370 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109119   ⟹   ENSRNOP00000078463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl858,435,663 - 58,512,313 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111256   ⟹   ENSRNOP00000081487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl858,527,600 - 58,534,370 (-)Ensembl
RefSeq Acc Id: NM_001014091   ⟹   NP_001014113
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,413,485 (-)NCBI
mRatBN7.2858,435,661 - 58,517,633 (-)NCBI
Rnor_6.0862,811,171 - 62,893,087 (-)NCBI
Rnor_5.0862,586,934 - 62,686,180 (-)NCBI
RGSC_v3.4861,806,805 - 61,888,721 (-)RGD
Celera857,899,978 - 57,981,440 (-)RGD
Sequence:
RefSeq Acc Id: NM_001413792   ⟹   NP_001400721
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,413,485 (-)NCBI
mRatBN7.2858,435,661 - 58,517,633 (-)NCBI
RefSeq Acc Id: XM_017595656   ⟹   XP_017451145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,413,503 (-)NCBI
mRatBN7.2858,434,798 - 58,517,646 (-)NCBI
Rnor_6.0862,809,768 - 62,893,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081473   ⟹   XP_038937401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,413,503 (-)NCBI
mRatBN7.2858,435,893 - 58,517,646 (-)NCBI
RefSeq Acc Id: XM_039081474   ⟹   XP_038937402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,413,503 (-)NCBI
mRatBN7.2858,435,661 - 58,517,646 (-)NCBI
RefSeq Acc Id: XM_039081475   ⟹   XP_038937403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,751 - 67,413,503 (-)NCBI
mRatBN7.2858,435,893 - 58,517,647 (-)NCBI
RefSeq Acc Id: XM_039081476   ⟹   XP_038937404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,413,503 (-)NCBI
mRatBN7.2858,435,893 - 58,517,647 (-)NCBI
RefSeq Acc Id: XM_039081477   ⟹   XP_038937405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,413,503 (-)NCBI
mRatBN7.2858,435,894 - 58,517,646 (-)NCBI
RefSeq Acc Id: XM_039081478   ⟹   XP_038937406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,390,790 (-)NCBI
mRatBN7.2858,435,890 - 58,494,939 (-)NCBI
RefSeq Acc Id: XM_063265481   ⟹   XP_063121551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,413,503 (-)NCBI
RefSeq Acc Id: XM_063265482   ⟹   XP_063121552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,413,503 (-)NCBI
RefSeq Acc Id: XM_063265484   ⟹   XP_063121554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,413,503 (-)NCBI
RefSeq Acc Id: XM_063265485   ⟹   XP_063121555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,354,227 (-)NCBI
RefSeq Acc Id: XM_063265486   ⟹   XP_063121556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,354,222 (-)NCBI
RefSeq Acc Id: XM_063265487   ⟹   XP_063121557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,354,220 (-)NCBI
RefSeq Acc Id: XM_063265488   ⟹   XP_063121558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,331,519 - 67,430,194 (-)NCBI
RefSeq Acc Id: XR_005487819
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,332,722 - 67,413,503 (-)NCBI
mRatBN7.2858,435,661 - 58,517,646 (-)NCBI
RefSeq Acc Id: XR_005487820
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,332,722 - 67,413,503 (-)NCBI
mRatBN7.2858,435,661 - 58,517,646 (-)NCBI
RefSeq Acc Id: XR_005487821
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8867,332,722 - 67,413,503 (-)NCBI
mRatBN7.2858,436,864 - 58,517,646 (-)NCBI
RefSeq Acc Id: NP_001014113   ⟸   NM_001014091
- Peptide Label: isoform 1
- UniProtKB: Q5XIR4 (UniProtKB/Swiss-Prot),   A0A8I5ZL14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451145   ⟸   XM_017595656
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000055287   ⟸   ENSRNOT00000058490
RefSeq Acc Id: XP_038937402   ⟸   XM_039081474
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937406   ⟸   XM_039081478
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937404   ⟸   XM_039081476
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937403   ⟸   XM_039081475
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937401   ⟸   XM_039081473
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937405   ⟸   XM_039081477
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085493   ⟸   ENSRNOT00000095328
Ensembl Acc Id: ENSRNOP00000078463   ⟸   ENSRNOT00000109119
Ensembl Acc Id: ENSRNOP00000086480   ⟸   ENSRNOT00000107812
Ensembl Acc Id: ENSRNOP00000081487   ⟸   ENSRNOT00000111256
RefSeq Acc Id: NP_001400721   ⟸   NM_001413792
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121558   ⟸   XM_063265488
- Peptide Label: isoform X14
- UniProtKB: A0A8I6GE34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121552   ⟸   XM_063265482
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121554   ⟸   XM_063265484
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121551   ⟸   XM_063265481
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZL14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121555   ⟸   XM_063265485
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063121556   ⟸   XM_063265486
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063121557   ⟸   XM_063265487
- Peptide Label: isoform X13
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIR4-F1-model_v2 AlphaFold Q5XIR4 1-775 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696026
Promoter ID:EPDNEW_R6551
Type:single initiation site
Name:Ccdc33_1
Description:coiled-coil domain containing 33
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0862,893,132 - 62,893,192EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561126 AgrOrtholog
BioCyc Gene G2FUF-30281 BioCyc
Ensembl Genes ENSRNOG00000008219 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000058490 ENTREZGENE
  ENSRNOT00000058490.3 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7133493 IMAGE-MGC_LOAD
InterPro C2_dom UniProtKB/Swiss-Prot
  C2_domain_sf UniProtKB/Swiss-Prot
  CCD33 UniProtKB/Swiss-Prot
KEGG Report rno:315712 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94366 IMAGE-MGC_LOAD
NCBI Gene 315712 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 33 UniProtKB/Swiss-Prot
  PTHR21623 UniProtKB/Swiss-Prot
Pfam PF00168 UniProtKB/Swiss-Prot
PhenoGen Ccdc33 PhenoGen
PROSITE PS50004 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008219 RatGTEx
SMART SM00239 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot
UniProt A0A8I5ZL14 ENTREZGENE
  A0A8I5ZRS0_RAT UniProtKB/TrEMBL
  A0A8I6GE34 ENTREZGENE
  CCD33_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Ccdc33  coiled-coil domain containing 33  LOC315712  similar to hypothetical protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC315712  similar to hypothetical protein      Symbol and Name status set to provisional 70820 PROVISIONAL