Ttll10 (tubulin tyrosine ligase like 10) - Rat Genome Database

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Gene: Ttll10 (tubulin tyrosine ligase like 10) Rattus norvegicus
Analyze
Symbol: Ttll10
Name: tubulin tyrosine ligase like 10
RGD ID: 1560839
Description: Predicted to enable protein-glycine ligase activity, elongating. Predicted to be involved in protein polyglycylation. Predicted to be located in axoneme and microtubule cytoskeleton. Orthologous to human TTLL10 (tubulin tyrosine ligase like 10); INTERACTS WITH 1-naphthyl isothiocyanate; 3-chloropropane-1,2-diol; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC298692; protein polyglycylase TTLL10; similar to hypothetical protein FLJ36119; tubulin tyrosine ligase-like family, member 10; tubulin--tyrosine ligase-like protein 10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,912,371 - 171,937,733 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5171,912,376 - 171,926,337 (-)EnsemblGRCr8
mRatBN7.25166,630,147 - 166,644,114 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,630,152 - 166,653,707 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5169,333,682 - 169,347,676 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,155,103 - 171,169,098 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,117,637 - 171,131,632 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,471,020 - 173,517,783 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,471,010 - 173,484,986 (-)Ensemblrn6Rnor6.0
Rnor_5.05176,943,171 - 176,991,593 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45172,879,873 - 172,893,840 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5164,830,952 - 164,844,917 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axoneme  (IEA,ISO,ISS)
cilium  (IEA,ISO,ISS)
cytoplasm  (IEA)
cytoskeleton  (IEA)
microtubule  (IEA)
microtubule cytoskeleton  (ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:19524510  


Genomics

Comparative Map Data
Ttll10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,912,371 - 171,937,733 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5171,912,376 - 171,926,337 (-)EnsemblGRCr8
mRatBN7.25166,630,147 - 166,644,114 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,630,152 - 166,653,707 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5169,333,682 - 169,347,676 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,155,103 - 171,169,098 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,117,637 - 171,131,632 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,471,020 - 173,517,783 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,471,010 - 173,484,986 (-)Ensemblrn6Rnor6.0
Rnor_5.05176,943,171 - 176,991,593 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45172,879,873 - 172,893,840 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5164,830,952 - 164,844,917 (-)NCBICelera
Cytogenetic Map5q36NCBI
TTLL10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,173,880 - 1,197,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,173,880 - 1,197,940 (+)Ensemblhg38GRCh38
GRCh3711,109,260 - 1,133,316 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,104,940 - 1,111,104 (+)NCBIBuild 36Build 36hg18NCBI36
Celera11,449,545 - 1,473,572 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1380,667 - 405,028 (+)NCBIHuRef
CHM1_111,096,258 - 1,120,338 (+)NCBICHM1_1
T2T-CHM13v2.01602,477 - 626,317 (+)NCBIT2T-CHM13v2.0
Ttll10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,119,292 - 156,135,274 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,119,297 - 156,143,871 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm384156,034,835 - 156,050,817 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,034,840 - 156,059,414 (-)Ensemblmm10GRCm38
MGSCv374155,408,946 - 155,424,926 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364154,878,635 - 154,903,144 (-)NCBIMGSCv36mm8
Celera4158,297,379 - 158,313,214 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.82NCBI
Ttll10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,575,162 - 9,589,297 (-)Ensembl
ChiLan1.0NW_0049554869,576,174 - 9,589,297 (-)NCBIChiLan1.0ChiLan1.0
TTLL10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,028,822 - 227,053,429 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,727,108 - 225,751,687 (-)NCBINHGRI_mPanPan1
PanPan1.111,131,691 - 1,143,449 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,131,691 - 1,155,349 (+)EnsemblpanPan2panpan1.1
TTLL10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,364,247 - 56,390,899 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,336,884 - 56,388,693 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha556,441,173 - 56,467,874 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0556,567,076 - 56,593,786 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,567,098 - 56,593,789 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,557,918 - 56,584,529 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,450,101 - 56,476,816 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,840,094 - 56,866,804 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ttll10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,537,402 - 27,550,174 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,910,286 - 1,926,061 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTLL10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,497,597 - 63,511,918 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1663,494,759 - 63,513,884 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,031,709 - 58,042,565 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTLL10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,247,309 - 130,270,452 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605434,816,286 - 34,840,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttll10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248188,382,673 - 8,389,891 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ttll10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v114,595,391 - 4,619,303 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:198
Count of miRNA genes:83
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000055319, ENSRNOT00000064207
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
13 8 29 101 87 90 59 41 59 6 246 88 85 80 91 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001170533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC097183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK653520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000055319   ⟹   ENSRNOP00000052187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5171,912,376 - 171,924,762 (-)Ensembl
mRatBN7.2 Ensembl5166,630,152 - 166,642,539 (-)Ensembl
Rnor_6.0 Ensembl5173,471,023 - 173,484,986 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000064207   ⟹   ENSRNOP00000063596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5171,912,376 - 171,926,337 (-)Ensembl
mRatBN7.2 Ensembl5166,630,152 - 166,653,707 (-)Ensembl
Rnor_6.0 Ensembl5173,471,023 - 173,484,986 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085087   ⟹   ENSRNOP00000070186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5173,471,010 - 173,483,825 (-)Ensembl
RefSeq Acc Id: NM_001024758   ⟹   NP_001019929
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,912,371 - 171,926,337 (-)NCBI
mRatBN7.25166,630,147 - 166,644,114 (-)NCBI
Rnor_6.05173,471,020 - 173,484,986 (-)NCBI
Rnor_5.05176,943,171 - 176,991,593 (-)NCBI
RGSC_v3.45172,879,873 - 172,893,840 (-)RGD
Celera5164,830,952 - 164,844,917 (-)RGD
Sequence:
RefSeq Acc Id: NM_001170533   ⟹   NP_001164004
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,912,371 - 171,926,337 (-)NCBI
mRatBN7.25166,630,147 - 166,644,114 (-)NCBI
Rnor_6.05173,471,020 - 173,484,986 (-)NCBI
Rnor_5.05176,943,171 - 176,991,593 (-)NCBI
Celera5164,830,952 - 164,844,917 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239562   ⟹   XP_006239624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,912,371 - 171,924,339 (-)NCBI
mRatBN7.25166,630,147 - 166,642,121 (-)NCBI
Rnor_6.05173,471,020 - 173,483,061 (-)NCBI
Rnor_5.05176,943,171 - 176,991,593 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063287509   ⟹   XP_063143579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,912,371 - 171,926,659 (-)NCBI
RefSeq Acc Id: XM_063287510   ⟹   XP_063143580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,912,371 - 171,937,733 (-)NCBI
RefSeq Acc Id: XM_063287511   ⟹   XP_063143581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,912,371 - 171,926,666 (-)NCBI
RefSeq Acc Id: XM_063287512   ⟹   XP_063143582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,912,371 - 171,926,659 (-)NCBI
RefSeq Acc Id: XM_063287513   ⟹   XP_063143583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,912,371 - 171,926,666 (-)NCBI
RefSeq Acc Id: XM_063287514   ⟹   XP_063143584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,912,371 - 171,924,343 (-)NCBI
RefSeq Acc Id: NP_001019929   ⟸   NM_001024758
- Peptide Label: isoform 2
- UniProtKB: A0A8L2QPH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001164004   ⟸   NM_001170533
- Peptide Label: isoform 1
- UniProtKB: A0A0H2UI23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239624   ⟸   XM_006239562
- Peptide Label: isoform X6
- UniProtKB: A0A8L2QPH6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052187   ⟸   ENSRNOT00000055319
Ensembl Acc Id: ENSRNOP00000070186   ⟸   ENSRNOT00000085087
Ensembl Acc Id: ENSRNOP00000063596   ⟸   ENSRNOT00000064207
RefSeq Acc Id: XP_063143580   ⟸   XM_063287510
- Peptide Label: isoform X2
- UniProtKB: A0A0H2UI23 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143583   ⟸   XM_063287513
- Peptide Label: isoform X5
- UniProtKB: A0A8L2QPH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143581   ⟸   XM_063287511
- Peptide Label: isoform X3
- UniProtKB: Q5XI57 (UniProtKB/Swiss-Prot),   Q4V8F2 (UniProtKB/Swiss-Prot),   A0A8L2QPH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143582   ⟸   XM_063287512
- Peptide Label: isoform X4
- UniProtKB: A0A0H2UI23 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143579   ⟸   XM_063287509
- Peptide Label: isoform X1
- UniProtKB: A0A0H2UI23 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143584   ⟸   XM_063287514
- Peptide Label: isoform X7
Protein Domains
TTL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI57-F1-model_v2 AlphaFold Q5XI57 1-679 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694343
Promoter ID:EPDNEW_R4867
Type:single initiation site
Name:Ttll10_1
Description:tubulin tyrosine ligase like 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05173,484,991 - 173,485,051EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560839 AgrOrtholog
BioCyc Gene G2FUF-38876 BioCyc
Ensembl Genes ENSRNOG00000020132 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000055319 ENTREZGENE
  ENSRNOT00000064207 ENTREZGENE
Gene3D-CATH ATP-grasp fold, B domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7112846 IMAGE-MGC_LOAD
  IMAGE:7454407 IMAGE-MGC_LOAD
InterPro TTL/TTLL_fam UniProtKB/Swiss-Prot
  TTLL10 UniProtKB/Swiss-Prot
KEGG Report rno:298692 UniProtKB/Swiss-Prot
MGC_CLONE MGC:114462 IMAGE-MGC_LOAD
  MGC:94940 IMAGE-MGC_LOAD
NCBI Gene 298692 ENTREZGENE
PANTHER INACTIVE POLYGLYCYLASE TTLL10 UniProtKB/Swiss-Prot
  PTHR46810 UniProtKB/Swiss-Prot
Pfam TTL UniProtKB/Swiss-Prot
PhenoGen Ttll10 PhenoGen
PROSITE TTL UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000020132 RatGTEx
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/Swiss-Prot
UniProt A0A0H2UI23 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QPH6 ENTREZGENE, UniProtKB/TrEMBL
  Q4V8F2 ENTREZGENE
  Q5XI57 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q4V8F2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Ttll10  tubulin tyrosine ligase like 10  Ttll10  tubulin tyrosine ligase-like family, member 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ttll10  tubulin tyrosine ligase-like family, member 10  LOC298692  similar to hypothetical protein FLJ36119  Symbol and Name updated 1299863 APPROVED
2006-02-09 LOC298692  similar to hypothetical protein FLJ36119      Symbol and Name status set to provisional 70820 PROVISIONAL