Vps51l1 (VPS51 subunit of GARP complex like 1) - Rat Genome Database

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Gene: Vps51l1 (VPS51 subunit of GARP complex like 1) Rattus norvegicus
Analyze
Symbol: Vps51l1
Name: VPS51 subunit of GARP complex like 1
RGD ID: 1560544
Description:
Type: protein-coding
Previously known as: hypothetical protein LOC293689; LOC293689; RGD1560544; similar to chromosome 11 open reading frame2; uncharacterized protein LOC293689
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21203,369,158 - 203,370,408 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1211,722,189 - 211,723,439 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,814,523 - 218,815,773 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,505,592 - 211,506,842 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Celera1200,902,844 - 200,904,094 (-)NCBICelera
Cytogenetic Map1q43NCBI



References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Markers in Region
BE102411  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21203,370,379 - 203,370,589 (+)MAPPERmRatBN7.2
Rnor_6.01221,440,464 - 221,440,673NCBIRnor6.0
Rnor_5.01228,375,900 - 228,376,109UniSTSRnor5.0
Celera1200,904,066 - 200,904,275UniSTS
RH 3.4 Map11535.7UniSTS
Cytogenetic Map1q43UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: NM_001106328   ⟹   NP_001099798
RefSeq Status: PREDICTED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21203,369,158 - 203,370,408 (-)NCBI
Celera1200,902,844 - 200,904,094 (-)RGD
Protein Sequences
GenBank Protein EDM12558 (Get FASTA)   NCBI Sequence Viewer  
  EDM12559 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001099798   ⟸   NM_001106328


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-56623 BioCyc
NCBI Gene 293689 ENTREZGENE
PhenoGen Vps51l1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Vps51l1  VPS51 subunit of GARP complex like 1  RGD1560544  similar to chromosome 11 open reading frame2  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1560544  similar to chromosome 11 open reading frame2   RGD1560544_predicted  similar to chromosome 11 open reading frame2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560544_predicted  similar to chromosome 11 open reading frame2 (predicted)  LOC293689  similar to chromosome 11 open reading frame2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC293689  similar to chromosome 11 open reading frame2      Symbol and Name status set to provisional 70820 PROVISIONAL