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Gene: Reep3 (receptor accessory protein 3) Rattus norvegicus

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Symbol:

Reep3

Name:

receptor accessory protein 3

RGD ID:

1560401

Description:

Predicted to enable microtubule binding activity. Predicted to be involved in endoplasmic reticulum tubular network organization and mitotic nuclear membrane reassembly. Predicted to be located in endoplasmic reticulum; membrane; and microtubule. Predicted to be active in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network. Orthologous to human REEP3 (receptor accessory protein 3); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC294375; receptor expression-enhancing protein 3; RGD1560401; similar to DNA segment, Chr 10, University of California at Los Angeles 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	REEP3 (receptor accessory protein 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Reep3 (receptor accessory protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Reep3 (receptor accessory protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	REEP3 (receptor accessory protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	REEP3 (receptor accessory protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Reep3 (receptor accessory protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	REEP3 (receptor accessory protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	REEP3 (receptor accessory protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Reep3 (receptor accessory protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Reep3 (receptor accessory protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	REEP3 (receptor accessory protein 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Reep3 (receptor accessory protein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	reep3b (receptor accessory protein 3b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	reep3a (receptor accessory protein 3a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	reep3a (receptor accessory protein 3a)	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	T19C3.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T19C3.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ReepA	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	reep3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	reep3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	21,492,695 - 21,575,138 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	21,492,721 - 21,577,521 (+)	Ensembl				GRCr8
mRatBN7.2	20	21,493,868 - 21,578,698 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	21,493,954 - 21,578,697 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	22,218,031 - 22,300,470 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	21,571,101 - 21,653,543 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	22,048,115 - 22,130,183 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	22,887,053 - 22,998,985 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	22,913,694 - 22,999,010 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	25,003,934 - 25,089,118 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	22,314,093 - 22,397,087 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	22,851,967 - 22,934,389 (+)	NCBI		Celera
Cytogenetic Map	20	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

autistic disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

Bisphenol B (ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

coumarin (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

Enterolactone (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

glafenine (EXP)

glyphosate (EXP)

ivermectin (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

quinolin-8-ol (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

endoplasmic reticulum tubular network organization (IBA)

mitotic nuclear membrane reassembly (ISO)

nuclear envelope organization (ISO)

Cellular Component

cytoplasmic microtubule (IBA)

endoplasmic reticulum membrane (IBA,IEA)

endoplasmic reticulum tubular network (IBA)

membrane (IEA)

microtubule (IEA)

Molecular Function

microtubule binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23911198

Genomics

Comparative Map Data

Reep3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	21,492,695 - 21,575,138 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	21,492,721 - 21,577,521 (+)	Ensembl				GRCr8
mRatBN7.2	20	21,493,868 - 21,578,698 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	21,493,954 - 21,578,697 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	22,218,031 - 22,300,470 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	21,571,101 - 21,653,543 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	22,048,115 - 22,130,183 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	22,887,053 - 22,998,985 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	22,913,694 - 22,999,010 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	25,003,934 - 25,089,118 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	22,314,093 - 22,397,087 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	22,851,967 - 22,934,389 (+)	NCBI		Celera
Cytogenetic Map	20	p11	NCBI

REEP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	63,521,401 - 63,625,128 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	63,521,397 - 63,625,128 (+)	Ensembl			hg38	GRCh38
GRCh37	10	65,281,161 - 65,384,888 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	64,951,129 - 65,051,978 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	10	58,548,607 - 58,652,369 (+)	NCBI		Celera
Cytogenetic Map	10	q21.3	NCBI
HuRef	10	59,317,846 - 59,376,614 (+)	NCBI		HuRef
CHM1_1	10	65,563,144 - 65,666,882 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	64,379,547 - 64,483,523 (+)	NCBI		T2T-CHM13v2.0

Reep3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	66,844,968 - 66,932,767 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	66,844,968 - 66,932,724 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	67,009,189 - 67,096,988 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	67,009,189 - 67,096,945 (-)	Ensembl			mm10	GRCm38
MGSCv37	10	66,474,256 - 66,559,605 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	66,406,865 - 66,492,214 (-)	NCBI		MGSCv36	mm8
Celera	10	68,103,541 - 68,155,033 (-)	NCBI		Celera
Cytogenetic Map	10	B5.1	NCBI
cM Map	10	34.83	NCBI

Reep3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	16,643,272 - 16,689,549 (+)	Ensembl
ChiLan1.0	NW_004955425	16,633,900 - 16,689,549 (+)	NCBI	ChiLan1.0	ChiLan1.0

REEP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	75,706,156 - 75,811,457 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	75,711,510 - 75,816,781 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	60,028,052 - 60,133,363 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	62,395,535 - 62,454,931 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	62,351,045 - 62,454,931 (+)	Ensembl			panPan2	panpan1.1

REEP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	15,369,720 - 15,426,661 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	15,373,333 - 15,423,354 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	15,546,366 - 15,644,122 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	15,593,837 - 15,691,784 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	15,593,812 - 15,691,778 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	15,575,593 - 15,673,328 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	15,704,923 - 15,802,581 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	16,056,469 - 16,154,257 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Reep3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	65,704,753 - 65,790,674 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936753	1,276,666 - 1,365,294 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936753	1,279,979 - 1,365,288 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

REEP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	66,966,372 - 67,071,191 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	66,966,068 - 67,071,200 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	72,253,247 - 72,360,109 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

REEP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	67,667,557 - 67,772,602 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	67,671,746 - 67,772,609 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	28,552,186 - 28,657,339 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Reep3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624791	212,200 - 307,160 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624791	208,577 - 307,192 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Reep3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	19,725,465 - 19,809,743 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Reep3
481 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	633
Count of miRNA genes:	284
Interacting mature miRNAs:	354
Transcripts:	ENSRNOT00000067920
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Markers in Region

RH128766

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	21,576,030 - 21,576,238 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	22,996,318 - 22,996,525	NCBI	Rnor6.0
Rnor_5.0	20	25,086,451 - 25,086,658	UniSTS	Rnor5.0
RGSC_v3.4	20	22,396,804 - 22,397,011	UniSTS	RGSC3.4
Celera	20	22,934,106 - 22,934,313	UniSTS
Cytogenetic Map	20	p11	UniSTS

RH142739

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	21,536,318 - 21,536,469 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	22,956,104 - 22,956,254	NCBI	Rnor6.0
Rnor_5.0	20	25,046,389 - 25,046,539	UniSTS	Rnor5.0
RGSC_v3.4	20	22,356,548 - 22,356,698	UniSTS	RGSC3.4
Celera	20	22,894,421 - 22,894,571	UniSTS
Cytogenetic Map	20	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067920 ⟹ ENSRNOP00000059452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	21,492,721 - 21,577,521 (+)	Ensembl
mRatBN7.2 Ensembl	20	21,493,954 - 21,578,697 (+)	Ensembl
Rnor_6.0 Ensembl	20	22,913,694 - 22,999,010 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109024 ⟹ ENSRNOP00000083179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	21,492,918 - 21,577,521 (+)	Ensembl
mRatBN7.2 Ensembl	20	21,525,961 - 21,576,312 (+)	Ensembl

RefSeq Acc Id:

NM_001106386 ⟹ NP_001099856

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	21,492,695 - 21,575,138 (+)	NCBI
mRatBN7.2	20	21,493,868 - 21,576,314 (+)	NCBI
Rnor_6.0	20	22,913,649 - 22,996,601 (+)	NCBI
Rnor_5.0	20	25,003,934 - 25,089,118 (+)	NCBI
RGSC_v3.4	20	22,314,093 - 22,397,087 (+)	RGD
Celera	20	22,851,967 - 22,934,389 (+)	RGD

Sequence:

show sequence

GGCGGCTCCGGGCACCGCGCGCACACACCGGGCCGGCTCCCGAGGGCGCCAGCGCGGCCCCGGG
GAGCGCGAGCTAGGAGCGCGCGGCCTGCGGTCAGCGGCCCAGCGGCCGAAAAGATGGTGTCCTG
GATGATCTCCCGAGCCGTGGTACTGGTGTTCGGAATGCTCTATCCGGCGTACTATTCCTACAAA
GCCGTGAAGACGAAAAACGTCAAGGAGTATGTCCGCTGGATGATGTACTGGATAGTCTTTGCCC
TCTACACTGTCATTGAAACGGTGGCCGACCAGACACTTGCATGGTTTCCCCTGTACTATGAGCT
GAAGATCGCCTTTGTCATTTGGCTGCTGTCACCCTACACTAGAGGGGCGAGTTTAATTTACAGA
AAGTTCCTTCATCCCCTGCTGTCATCGAAGGAAAGGGAAATTGATGATTATATTGTCCAAGCCA
AAGAAAGAGGCTATGAGACAATGGTGAATTTCGGACGGCAAGGTTTGAATTTGGCAGCTGCAGC
TGCCGTCACCGCAGCAGTGAAGAGCCAAGGAGCCATAACGGAGCGTTTGCGAAGTTTCAGCATG
CACGATCTGACAGCTATCCAGGGGGATGAGCCGGTGGGACACAGACCTTACCAGACTTTGCCAG
AAGCAAAGAGGAAAGGCAAACAAGCCACTGAGTCACCAGCCTATGGAATTCCGCTGAAAGACGG
AAGTGAGCAAACAGACGAAGAAGCTGAGGGGCCGTTCTCCGATGACGAGATGGTGACTCACAAG
GGGCTGAGGCGGTCCCAGAGCATGAAGTCTGTCAAGACCATCAAAGGCCGCAAAGAGGTGCGGT
ACGGTTCACTAAAATATAAAGTGAAGAAGAGACCACAGGTGTATTTCTAGTGTCTACACCACAC
CCATCTCAAGACAAATAAATGTAACAAATCAACTTCATTTTCTAACACGACGTATTCAGGACTT
AACACTTTAATTTTGTGGCGATGACGGGGTCTACGTAATGACTTTAAATAGTTCGTGTTTCTTT
AACAATTACTTTTAGATTTTGAACTGCTAAGCGTAGTCATATAAGGTTTGTTAATGTATGTGTA
CATAGCAAAAGTGACAGGGAATCACGCTCCTGATGTCAGCAGCCACACTGAGTGCCTGAGATGT
AAAGATAAAGCACAGACCAGGGCATACGTAAAAAGTCTTTGCAGCAGGATACACCTGCCGTTCT
GGTGTTGCATTCTGTTTACGTCATACCATAGGATGGTGCCGTGTCCTTCCTTAAGCCTTTGAAA
CTTTCCACCATGAGCTGAAAGTTTTTAAAACAGATTATTTGAAAACCAGGTGTCCATGTAGCAC
TTTCCGGGCTAGTTTTGCACACTTGAAAATTGTTTACTTAGTTTACGGCTGTACATTTACTTTA
CATTGTATCGAGGCTGTCTTTTTTGTTGTCTGTCAGATTCTGACATGTGAGGATTAGGCCTTGA
AACTGCATCATCTCCTTTGCCTATGGGTTTGTTTCATTTGTTAAATTCATTCAGCTTATGTAGA
GACATGTAACTGTTAACTTTTTACTCCTTTGTTTGGTTTTGGTTTTTGAATTAGGGTCTCATAG
CCCAAGGGCGGCCTTGAACTCCTGATCTCTTCCTGCTACCACCTCACAATTGCTGAGATAACAG
GTGTTATCACGCCTGGCTAATTTGAGCTGTCTTTCAATTATATTCTTGACATCTGAGAAGTTAC
CGCAAACATTAACCAGTTTCCATAGTTGAACTCGATGTGTTTTTATCAACAGCAAATTACATTA
TTCTAAAAAATTAGTTTTTGGGGGCTGGAGAGGTGGCTGGTTAAGAGCACTGGCTGTTCTTCCA
GAGGACCATGGTTCAAGTCCCAGCACCCACATGGCAGCTCACAACTGTCTGCCATCCAACTCCA
AGTGACTCAACACCCTCACACAGATATGCGCACAGGCAAAACCCCACTGCACATAAAATGTAAA
TAAATAAGTAAATGACTAGCTTTGTGGAATAGTCATAGACCAGTGTAGTACTTAGTGTATTCTA
AATCATGGGAATCCCAGTGGCCACCCTCCATTCCCAAGCTCGGCAGATGTTCATGCTACCTTAC
AGACCGGGCAGTGACTAACATCTTTTAGATCTTTTCCTGCCTGAGGGTATTCTCTGAAGATGAG
TGTCAGGGTAAAACACAAACATCATTGATGCTACATAACCCAGGCTTCCAGATAAGGACCATCT
TGTTAATCTAAGAGATATAGAGGGATTGAACTCGGCTCTTTTTAGGTTACCTTACTAACTGGGC
ATTATGGACACTAAATCATATTAGGGGTGATGAATAATCAAAATTTCAACATCGAACAATATTT
ACTTACGTGGGGGTGCCTGAGTGGCATCCACACATGACTCCTCTTGATGCTACGGATATTTTCT
AAACTGAATCACATTGTTAATATTTTTAACACCAAATAAAAATTTAATTTTTTCCCTCCCAAAT
TTAAAAAAAAAAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_001099856	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58871	(Get FASTA)	NCBI Sequence Viewer
	EDL97333	(Get FASTA)	NCBI Sequence Viewer
	EDL97334	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059452
	ENSRNOP00000059452.4
	ENSRNOP00000083179.2

RefSeq Acc Id:

NP_001099856 ⟸ NM_001106386

- UniProtKB:

B0BNL5 (UniProtKB/TrEMBL), A0A8I5ZZG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVSWMISRAVVLVFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTLAWFPL
YYELKIAFVIWLLSPYTRGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVNFGRQGLNL
AAAAAVTAAVKSQGAITERLRSFSMHDLTAIQGDEPVGHRPYQTLPEAKRKGKQATESPAYGIP
LKDGSEQTDEEAEGPFSDDEMVTHKGLRRSQSMKSVKTIKGRKEVRYGSLKYKVKKRPQVYF

hide sequence

Ensembl Acc Id:

ENSRNOP00000059452 ⟸ ENSRNOT00000067920

Ensembl Acc Id:

ENSRNOP00000083179 ⟸ ENSRNOT00000109024

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A0H1-F1-model_v2	AlphaFold	D4A0H1	1-254	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701564

Promoter ID:

EPDNEW_R12087

Type:

initiation region

Name:

Reep3_1

Description:

receptor accessory protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	22,913,673 - 22,913,733	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560401	AgrOrtholog
BioCyc Gene	G2FUF-3861	BioCyc
Ensembl Genes	ENSRNOG00000000645	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067920	ENTREZGENE
	ENSRNOT00000067920.4	UniProtKB/TrEMBL
	ENSRNOT00000109024.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7930425	IMAGE-MGC_LOAD
InterPro	TB2_DP1_HVA22	UniProtKB/TrEMBL
KEGG Report	rno:294375	UniProtKB/TrEMBL
MGC_CLONE	MGC:188508	IMAGE-MGC_LOAD
NCBI Gene	294375	ENTREZGENE
PANTHER	RECEPTOR EXPRESSION-ENHANCING PROTEIN 3	UniProtKB/TrEMBL
	TB2_DP1_HVA22	UniProtKB/TrEMBL
Pfam	TB2_DP1_HVA22	UniProtKB/TrEMBL
PhenoGen	Reep3	PhenoGen
RatGTEx	ENSRNOG00000000645	RatGTEx
UniProt	A0A8I5ZZG2	ENTREZGENE, UniProtKB/TrEMBL
	B0BNL5	ENTREZGENE, UniProtKB/TrEMBL
	D4A0H1_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Reep3	receptor accessory protein 3	RGD1560401_predicted	similar to DNA segment, Chr 10, University of California at Los Angeles 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560401_predicted	similar to DNA segment, Chr 10, University of California at Los Angeles 1 (predicted)	LOC294375	similar to DNA segment, Chr 10, University of California at Los Angeles 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC294375	similar to DNA segment, Chr 10, University of California at Los Angeles 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD