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Gene: Prdm10 (PR/SET domain 10) Rattus norvegicus

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Symbol:

Prdm10

Name:

PR/SET domain 10

RGD ID:

1560384

Description:

Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of transcription repressor complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in Birt-Hogg-Dube syndrome. Orthologous to human PRDM10 (PR/SET domain 10); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500964; PR domain 10; PR domain containing 10; PR domain zinc finger protein 10; RGD1560384; similar to PR domain containing 10 isoform 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRDM10 (PR/SET domain 10)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Prdm10 (PR domain containing 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prdm10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRDM10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRDM10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prdm10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRDM10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRDM10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prdm10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Prdm10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PRDM10 (PR/SET domain 10)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Prdm10 (PR domain containing 10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prdm10 (PR domain containing 10)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	prdm10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	prdm10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	37,982,210 - 38,085,907 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	37,982,403 - 38,085,907 (+)	Ensembl				GRCr8
mRatBN7.2	8	29,724,011 - 29,827,757 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	29,724,245 - 29,826,080 (+)	Ensembl				mRatBN7.2
Rnor_6.0	8	32,419,921 - 32,526,357 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	32,452,885 - 32,526,351 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	32,445,116 - 32,551,157 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	31,067,787 - 31,137,510 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	31,182,995 - 31,286,272 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Birt-Hogg-Dube syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

D-glucose (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

folic acid (ISO)

FR900359 (ISO)

gallic acid (ISO)

gentamycin (EXP)

glucose (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

quercetin (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

Cellular Component

chromatin (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

transcription repressor complex (IBA,IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (IBA,IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

transcription cis-regulatory region binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:31143550

Genomics

Comparative Map Data

Prdm10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	37,982,210 - 38,085,907 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	37,982,403 - 38,085,907 (+)	Ensembl				GRCr8
mRatBN7.2	8	29,724,011 - 29,827,757 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	29,724,245 - 29,826,080 (+)	Ensembl				mRatBN7.2
Rnor_6.0	8	32,419,921 - 32,526,357 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	32,452,885 - 32,526,351 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	32,445,116 - 32,551,157 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	31,067,787 - 31,137,510 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	31,182,995 - 31,286,272 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

PRDM10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	129,899,711 - 130,002,835 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	129,899,706 - 130,002,853 (-)	Ensembl			hg38	GRCh38
GRCh37	11	129,769,606 - 129,872,730 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	129,274,811 - 129,377,940 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	129,274,811 - 129,322,727	NCBI
Celera	11	126,937,763 - 127,040,883 (-)	NCBI		Celera
Cytogenetic Map	11	q24.3	NCBI
HuRef	11	125,721,900 - 125,824,816 (-)	NCBI		HuRef
CHM1_1	11	129,655,207 - 129,758,324 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	129,935,739 - 130,038,861 (-)	NCBI		T2T-CHM13v2.0

Prdm10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	31,187,406 - 31,293,027 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	31,191,834 - 31,293,019 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	31,276,110 - 31,381,731 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	31,280,538 - 31,381,723 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	31,122,692 - 31,186,128 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	31,064,672 - 31,128,108 (+)	NCBI		MGSCv36	mm8
Celera	9	28,576,073 - 28,639,529 (+)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	16.77	NCBI

Prdm10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	30,852,969 - 30,917,510 (-)	Ensembl
ChiLan1.0	NW_004955412	30,855,909 - 30,929,998 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRDM10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	130,581,304 - 130,685,566 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	131,691,376 - 131,796,261 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	124,712,440 - 124,816,141 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	128,607,595 - 128,710,159 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	128,607,600 - 128,710,156 (-)	Ensembl			panPan2	panpan1.1

PRDM10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	4,845,250 - 4,941,891 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	4,879,192 - 4,939,649 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	4,905,820 - 5,002,476 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	4,854,894 - 4,900,174 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	4,838,922 - 4,900,187 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	4,866,219 - 4,962,418 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	4,847,919 - 4,944,586 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	4,875,898 - 4,972,604 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Prdm10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	112,016,843 - 112,116,969 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936572	2,371,495 - 2,433,527 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936572	2,369,096 - 2,433,538 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRDM10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	56,657,270 - 56,749,482 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	56,657,270 - 56,749,487 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	62,881,051 - 62,960,599 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRDM10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	120,982,207 - 121,086,938 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	120,982,993 - 121,044,928 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	5,014,790 - 5,113,060 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prdm10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624812	4,287,749 - 4,390,020 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624812	4,283,179 - 4,389,520 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Prdm10
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	27,002,378 - 27,103,109 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Prdm10
1318 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	58
Count of miRNA genes:	26
Interacting mature miRNAs:	29
Transcripts:	ENSRNOT00000010423, ENSRNOT00000060621
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	37760859	58991895	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	37760859	61459705	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	35464071	71842899	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	34125902	55607752	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat

Markers in Region

D8Got39

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	29,751,676 - 29,751,880 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	32,449,811 - 32,450,014	NCBI	Rnor6.0
Rnor_5.0	8	32,474,611 - 32,474,814	UniSTS	Rnor5.0
RGSC_v3.4	8	31,064,589 - 31,064,793	RGD	RGSC3.4
RGSC_v3.4	8	31,064,590 - 31,064,793	UniSTS	RGSC3.4
Celera	8	31,212,863 - 31,213,064	UniSTS
RGSC_v3.1	8	31,073,356 - 31,073,559	RGD
RH 3.4 Map	8	244.2	UniSTS
RH 3.4 Map	8	244.2	RGD
RH 2.0 Map	8	176.7	RGD
Cytogenetic Map	8	q13	UniSTS

D8M9Mit188

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	29,803,357 - 29,803,788 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	32,501,960 - 32,502,390	NCBI	Rnor6.0
Rnor_5.0	8	32,526,760 - 32,527,190	UniSTS	Rnor5.0
RGSC_v3.4	8	31,116,263 - 31,116,693	UniSTS	RGSC3.4
Celera	8	31,264,532 - 31,264,963	UniSTS
Cytogenetic Map	8	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	355	192	11	143	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010423 ⟹ ENSRNOP00000010423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	37,982,403 - 38,085,907 (+)	Ensembl
mRatBN7.2 Ensembl	8	29,724,245 - 29,826,080 (+)	Ensembl
Rnor_6.0 Ensembl	8	32,452,885 - 32,526,351 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094753 ⟹ ENSRNOP00000087282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	37,982,403 - 38,085,907 (+)	Ensembl
mRatBN7.2 Ensembl	8	29,724,245 - 29,826,080 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113679 ⟹ ENSRNOP00000078533

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	37,982,403 - 38,029,433 (+)	Ensembl
mRatBN7.2 Ensembl	8	29,724,245 - 29,771,277 (+)	Ensembl

RefSeq Acc Id:

NM_001427772 ⟹ NP_001414701

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	37,982,403 - 38,085,907 (+)	NCBI

RefSeq Acc Id:

XM_017595995 ⟹ XP_017451484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	37,982,210 - 38,085,907 (+)	NCBI
mRatBN7.2	8	29,724,011 - 29,827,757 (+)	NCBI
Rnor_6.0	8	32,419,924 - 32,526,357 (+)	NCBI

Sequence:

show sequence

GGCCAGAAGACTGGCCAAGAGAGTAAAAGGTGGACCAAAAAGGACTGGTAACCGAAATGGCTGG
ATTATATGGGGAAGGGCAAGAAGCCTCTAGGTTGGAGTTCAGGGGAGGGGGAGGGGTATGACAA
CCATACCACATACCAGGTATAACTGAGGGATGCAGGCAGAACCTGGCAGCCACTGTGTGCTTTG
ATATGTAAATGAGTGCCTCAGTTTGCCATTTGTCCCTGGGTTTGAGACCTAAGAGTACACACAT
GTACACATATGTACATGTACAAACACAAACAGGAATGAAGACATCTGTAGCAAAGACATTAGGG
GAAAGAAATATACAGAAATAAAAATTGGCTTCATCATCTATCACAGTAACCTCATCCTGGTTAT
AAAAAAAAGACAACGGTTTTTAGAACATTTGTTTAAGTCCCAGCTAGATAGATGTAGTCCCATT
TCTCCTGTTGAGTTTTCTTTCTTGTCATCTCTGATAACCTGACCTCTGGGACTCTTAATACATC
AGAGACGATATAATATTGTTAAATCTCAAAAGGATCTCTAGAGGCCATGGGTATAGGGCATGGC
CGCCTTCCAAGGCCATCGAGGGCCTGTCTACCTCTGGCATTTCGGACTCCAATCACTGAGCGAT
CATTCCAGAGACTTCTCTGGCTACTACAAAACATTCCAGAAGCAAATGGCTTCTTGACAATAGA
CCCGGAGAGGAGAGAACAGCGCTGCACGTGACAAATGGGAGTCTAGCTCATCTGTCTCCCTTTC
ATGCTTTCTTTTCTACTGGGTTCAGCAGGGCCTTTATTCTATGTCTGGTGCTGCTCCCAAAGGG
GTCTGTGGAAGAACAAATCATGGATTCTTCGTTAAGTCCTGCCTTCCTAGGCTGTCCTGTCTGA
GTTTTAAAAACTGGCCTCAGCTTTTCGCTGTTTTTAGTCATTTAAACAAAACTGCAACTGCAAG
CGATCTGGTGGAACGGATTTTAGGTTTTCTCCCTGGATTTTTTTTCTCGAGCCTTTTGTTTCCT
GGTACTTCTTTTTTCTTGGCTAGCCAGTAGTTTTGTAGGGGATTTTGTTTGGAAACTGAATTTT
GTTGTATACTGCTGGCTGGCCTGGAACTGTGTAGGCCACATTACCCTCAAACAATTCTGCCTTT
CCACTCAAGAACTGGGATTATGGGTTTGGATTATCTAGCTTTCTCTCTGTAGGCTTTATCACCT
CTAACCTTTCTGTTTCTTAAAAGTTCCGGTCAGTGTTAGAAGAGAATTTTAACGGATGATCTCA
TTTAACCTTCAAAGCAACACAGTAAAGTACAGGTCTTGGGTAATGAAAATATTCCCTGCAGACA
CAAAGAGCGAAGGTCTCTGGCATTTGGTTGCCATTCCTGTTTTCAGTGGGGGAGTTCCCAGGTT
GTCTCATTTCAAAGCTGAGCTTGCTTTTACAAACCTGGCTAACACTGAGAAGGCAATCTTAAGG
GACAGTACGACGTGGAGGTCCTAAATTAAGAAAGAAGAGTTCTGACATTTTTGCTCGTTCAGTA
TTGACTAACGTTCCCTCACCCGGCTTAAGTAGTTCAAGCTGGCCTTTAACTGCAGCTCCTATTG
CCTCCACCTCCTGGGTGCACCACCACTCCAGGGTTATGTGGTGCTGGGGCTTGAGCACAGGACT
TAGTGTGGTAGGCGCTCTACTGAGACACATCCTCACCCCGATTGCTTCTGAAAAACTTTTCCAG
AATGGTAAATGGTGGAAAAGAGAGATGTAGTGTAGGTGCTGTAAAGGGACTGCAAGGTCTGATG
ACCGATTCTCCTTGTGTCTGGAAGGCTGATAGGCCACTCCTGGCCCGCGGGGCGCAGTCTGTTT
AACCGGTTTCGGTAGTCCCGGAAAGGCGTGTCCCAGTCGCGCTGAGGCCCCGGGCGCGCGCGTT
CTGTGCAAGTCCGCCCTGGAGCGGGAAGATCCACGGCCCACGCCTCCAGAGCTTCCGAGGACCC
GAGTGTGGGGGGACAGGTGGACTAGGGATTCGGGTGTGCATTGGATCTTCCACACTGGATGCTC
AAGCATGCTGGACTGTGTCCCTCCACTTGCCCGCCAAGGTTCTTAGATGGGCCTTGACCCTGAA
TGCAAAGAGTGGGGCTTTCTGATTGGCTTAGAGTACAAACGCAGGCAAGCACCGCCAGAGACCC
GCTCTTCTATTGGGTTTTACATGAACTGCAGAGCACCAAATAAAGAGGCCTTCAGTCATTGGGC
CATTGTGTGAATCTCCTTTTGGCTTCTCTGCAGACTGAATTAGCGTCCCAGGATTTTCGTCATG
ACTCTTAAATCTGGGCTTGTCAGTTCGGCCCAGCGTTCCTGGTCTCTAGGAACAGCATGGGACT
TTCAGAGTTTAGCCAATCACATAACGTTGAGATCAGGTTGCCAGGCAGATTATGCTAATAAGGC
CCCGCCTTTTATGCTGCTCCCACTCTGCGGCGGGAAGAACCACCTGGAGGCGGCGGGGGGGTTT
GATTTCCATCACCCCTAGGGAGAGAGGATCCGGGACCCGCTGATCTTCCAGCTCCCCTCACCCA
ACGTCGTGGGCGCTGTAGAGACCTTCCTGCCCTCCATGAGCACACGTGTACAGGACCTACAAGA
CAGATGAGTGCTCTCTGTCCTGAGCTACTGCTGTAGGTGGTTCAGACTTGGAGCTGTCCAACAA
GAAGATGGATCCCAAAGATGAAAGTTCTCATGTGTGGCCAACGTCTGCAGACCATGAACAGAAC
ACTGCACAGGTGCACTTTGTTCCGGATGCCGGAACTGTGGCTCAGATTGTATACACTGACGACC
AAGTCCGTCCACCCCAGCAGGTGGTTTATACGGCAGATGGTGCCTCCTACACGTCAGTGGACGG
TCCAGAGCACACACTGGTGTACATCCACCCAGTGGAAGCTGCACAGACTCTGTTTACAGATCCA
GCCCAGGTAGCTTATGTCCAACAGGATGCCACAGCTCAACAGGTGCTGCCTTCCATTGAGAGTG
TGGATGGTTCAGACCCTCTGGCAACTCTGCAGAACCCAATTGCCAGACTAGATGCAAAAGAGGA
AGAGGAAGAAGAGGAGGATGAAGATGAGGATACAGAGGAAGAGGAGGAAGAGGATGCTGAAGAC
ACGGATGTGGATGACTGGCAGCCTGACCCACCCAGGCCTTTTGATCCCCATGATTTGTGGTGTG
AGGAGTGTAACAATGCACATTCTTCTGTGTGCCCAAAGCATGGCCCCTTGCATCCAATCCCTAA
CCGGCCTGTGCTCACCCGGGCAAGAGCCAGTCTGCCTCTGGTCCTCTACATAGATAGGTTCCTT
GGGGGAGTGTTCTCCAAAAGACGGATTCCCAAGCGCACCCAGTTTGGCCCAGTGGAGGGGCCAC
TGGTCAGGGGATCAGAGCTGAAAGACTGCTACATCCATCTCAAGGTTTCTCTTGATAAAGGAGA
CAGAAAAGACAGGGATTTGCATGAAGACCTGTGGTTTGAGTTGTCTGATGAGACCCTTTGTAAC
TGGATGATGTTTGTGCGCCCAGCCCAGAACCACCTAGAACAGAACCTGGTAGCTTACCAATATG
GCCACCATGTGTATTATACAACAATAAAGAATGTGGAGCCCAAGCAGGAACTGAAGGTGTGGTA
TGCTGCATCCTATGCCGAGTTCGTGAATCAGAAAATCCACGACATATCTGAAGAAGAAAGGAAA
GTTCTTCGAGAGCAAGAGAAGAATTGGCCATGCTATGAGTGCAACCGGCGGTTTATCAGCTCAG
AGCAACTACAACAGCACCTCAATTCTCACGATGAGAAGCTAGATGTGTTTACCAGAACAAGAGG
CAGAGGAAGGGGTCGAGGCAAGAGGAGATTTGGCCCTGGCCGGCGGCCTGGACGTCCTCCAAAA
TTTATCCGTTTGGAAATCACCAGTGAAAATGGGGAAAAGAGTGACGATGGAACACAGGACTTGC
TGCATTTCCCCGAAAAGGAGCAGTTTGATGAGGCTGAGCCAGCTGCTCTGAACGGACTAGATCA
GCCAGAACAAGCGTCCATCCCAGTTCCTCAGCTGCCACAGGAAACCCCGACTTCTCTGGAGCAG
GAACCAGAAACTCACACCTTGCACCTGCAGCCACAGCAAGAAGAGAGCCTAGTGCCTACCCAGA
CCACTTTGACAGCCGATGACATGCGCAGAGCCAAACGCATCCGAGTGAAAAAGCATGTGCGAAG
CTTCCACTCGGAAAAGATCTACCAGTGTACAGAGTGTGACAAGGCCTTCTGTCGCCCTGACAAA
CTGAGACTGCACATGCTCCGGCATTCCGACCGCAAGGACTTCCTGTGTTCCACCTGCGGGAAGC
AGTTTAAGCGAAAAGACAAACTCCGGGAGCACATGCAAAGGATGCATAACCCTGAAAGGGAGGC
CAAGAAAGCTGACCGCATCAGCCGTTCCAAGACCTTCAAGCCCCGAATCACATCCACAGACTAC
GACAGCTTCACGTTCAAGTGCCGCCTGTGCATGATGGGCTTCCGGAGGCGAGGCATGCTGGTGA
ATCACTTATCAAAGAGGCATCCAGACATGAAGATAGAAGAGGTGCCTGAGTTAACCCTCCCCAT
CATAAAACCCAATCGAGATTACTTCTGTCAGTATTGTGATAAGGTTTATAAGAGTGCCAGCAAG
CGCAAAGCCCACATTCTGAAGAACCATCCAGGAGCGGAACTCCCACCAAGCATTCGGAAACTTC
GTCCTGCTGGCCCTGGAGAGCCTGACCCTATGCTGAGCACCCACACCCAGCTGACGGGTACCAT
TGCCACCCCTCCTGTCTGCTGCCCACACTGCTCCAAGCAGTATAGCAGCAAGACCAAGATGGTG
CAGCACATTCGAAAGAAGCACCCAGAGTATGCCCAGCTTCCCAACACCATCCACACGCCACTGA
CAACAGCTGTGATCAGCGCCACCCCAGCTGTCTTAACGACAGATAGTGCCACTGGAGAGACTGT
GGTGACAACAGACCTGCTAACTCAGGCGATGACGGAACTATCCCAGACCTTAACAACGGATTAC
CGAACACCTCAGGGGGACTACCAAAGGATTCAGTATATCCCTGTGTCTCAGTCAGCGTCTGGTC
TGCAGCAACCTCAGCACATACAGCTGCAAGTGGTGCAGGTGGCTCCGGCCACTTCCCCGCATCA
GTCCCAGCAGTCCACAGTGGATGTTGGCCAGCTGCATGATCCTCAGACCTACACGCAGCATGCC
ATCCAGGTGCAGCACATCCAGGTCACAGAGCCCACCCCCACAGCTCCATCAGCATCCCAGGTAG
CAGGGCAGCCATTGAGCCCCTCTGCTCAGCCGGTCCAGCAGGGGCTCAGCCCCTCCCATATCCA
AGGCAGTTCTTCCACTCAAGGGCAGGCTCTACAGCAGCAGCAGAATTCCTCTGTACAACACACA
TACCTCCCCAATGCTTGGAACTCCTTCCGTGGTTATTCGTCAGAAATTCAAATGATGACACTGC
CTCCAGGTCAGTTTGTGATCACAGACAGTGGTGTGGCAACCCCTGTTACATCTGGGCAAGTGAA
AGCAGTGACTTCGGGTCATTATGTATTATCAGAAAGTCAACCAGAATTGGAGGAAAAGCAAGCC
TCTGCTCTCTCCGGAGCAGTCCAAGTTCAGCCGTCTGCACACAGTGACTCCCTGGACTCCACAA
GCCCCAGCCAACAGCAGACCACCCAGTACATCATCACAACCACCACCAATGGGAATGGGGGCAG
CGAAGTGCACATCACCAAGCCGTAGCCTTCATCCCCTGGCTGGAGGCCAGAGTTCACGCCACAG
TTTCTCATTTGGAATCTGAAGCTCCAAACACCTCAACCTCTTTTTAAAGACTTATTACTCTCTC
AAGAGTTTGGGAACTGCAGTTTTGACACACATAGACCAAGGGTGATTTCTGCCAAGGTCATCTT
TACTCGATTGACTCGTCCCACCCTTGGGATTTCTGCTACGGAATGCAGTTCTTTCTGGGGAAAG
TTAACTTCCAGATGGAGAAACTTGCGCCTTGCTCTTGAGCTGGTTGTTTTGTTTTTGTTTTTGT
TTCTGAACACACTGACAAGCCTTACTTCCCTTTGTGGACATACTCAGTGGCTAGTATTATGTTC
GTACCAAAGGGTGGAGACAAGTTGTACCAAGTCCATGGCCACTGGACATCTGAAACCCAAGCTA
TGGCGTCAAAAGAGAAGGAACATTTCTTTCCTGGGTGTGATTAGGTCAGGACCGCTGTCTCTCA
TGCAGTGGAGTTTTCAGTAATTTTAACAAAGGCAGCCTATTGGATGGAAAAATTAAAATAAGAT
AAAGATTTGAAGGTGGTCTTCTGAGCGAAAAACTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCGTCTCAGTCTCACTCTGCTACTCTGCTGCCCAGGATAGCCCTGAGC
TCATGGGCTCATGGGATCCTCCTGCCTTAGTTTCCCAAGTAGCTGGGACTACGGTCAGCACTGT
CATGGCAGTTGTGTTTAAACTCTCTTGTTTCGGAAAACCTACTGGGCAGTAGCAGGACTCCCCA
CAGATGCTGACCCCAGGCAGACCTGGCCTCATATTCCACAAGCACAGACAGACTCCCTGGAAGA
CAAAAGGTTGCATGGTCTCAGCAGGATTTGAGCCCCTTTGTTAACGCTCTGCTTCCAGGCTTCT
GGTTATATATAGCTGTGCTTAAGAAGAAGATATGTTCTACGAAAAATATGTAAATTGTATATAT
TTGTGTGTGTGTGTGTATACACACACACACACACACACACACACACACACACACATACTTATGG
AGAGAGGGAGAGAGAGAGAACTGAGACCTTGTCCTGCCTCACAGGATGTGAAGGATGAGCTCCT
TACTCAGACACTCATAAACTCAGCTGCGTACGTATAGCACCTTTGTGTGTGATGCTAGGACTCA
AACCCAGGGCCTCTGCATGCTGGGCAGGTTCCCCACCACTGAGCTACAACTCCGGCCCCACCTC
GCACTCTTGTTCACAGCATTGACTGTATTTTAGTACTTTCAGTGCTGTCTGAAAAGTGAAGATT
CTTTAAGGTTGTGTAGAAAGGCGGCCTTTCTTTCTTCTAAGCATTTTAAACTTTAAGCCTATTG
CAACTCACCCAGACCTTGATATAAGATGACCTACTTCCCACTTAGGGCAAACATAAAATAAAGG
GACCATTGTAGTAGGCTGAGGTAAAGGGATGGGTGTGCAGTTAGTTCTGAGAGGAACGCAGTCG
TCTGTGTGATAGTGGTCTTCTCTGTCTTCCTGTTTTCGAGTCTTGTTTGCTGTGAATCTAGTGG
GGAAGTGCTGCCCCTCTTTTTACTCTGCATTCCACTTGTACCCATAAGACATCTTTAAAGCCTG
TATTTTAACAACTTTTGTGACATATATTTAAAAATAATTATTGTAGAGTGAATTTATCACTCCA
GATCAGGGAGACCTAAGTTTGTTTCAAATGAAGTTAACTAATTTATTTTATTTACATTTCTAAG
GAAAAACTGGGTCTGTGATTTAAGAAATAGAGTAACTTCTGGGTGGTAAAGAGGCCTTCCTGAA
AAGTAATCCTTTGGTTTGAAGTCACTTTATTTATTACGTAGATCCTACACTTTCCTCTTGGGAT
CTCATTCATAGACTATGTCTGAAGATTGGGGCCTGAAAAGAACCTGGGAAAATTACCTCAAAAA
ATGTGTGGAAACTGAAAATGGACTCTGTATCTTTGCCAACAAGAAAAGGTTAACAATAATTTCA
ACATGAAATGTTGACTCCGTCACAAAATGCAAGACTCTGGTCCCCAAATTCCTGTGGTGTAATG
ACTATAACTGTCTCGGGTTCTCCAAAAGTCATGTAGTGTTGTAACTGTCCCAGGGTCTCATCCA
GAGAGCCTTGGAAGGCGAAGAGCACGAGACCACCTCTAAGGTACAGTTTGAGGTTTTTGTGATT
TAAATTTGCGCCGCTGCAGCAGGGTGTGGGAGTGAACACCTTTAATCCAGCACTTGGAAGGCTG
CTGCGGGCCTGCCTTTCAGTTGGAGGCCACTCCTACAAAGAGTTCAAGGACAGCCAGGGCTACA
CACTGAGAGCCCTTGATTTGAAAAGAAAACTACACAAGTAAATAAATAAATTTGACCCAATGGA
TTCTCTTTAATGAGAGCCAGCAGGGGTGTCTCCCCTCTTCTCAGGAATAACGCAGTGATTAAAA
CAAAGCCAATCACTGGAGGAATGTTGGTTTTATGCCAGTTATTTTTAACTTTTAAAATACGCAG
AGGAAAATACTGTTGAAGGACCTCTTCATCTCTTTCTCCTTTTTTGGGTCCTTATATGGAGTAA
GTAAATTCCAGAACATAATACTATCACTGTTCTAAGATCAGGTATTTTATGAATTTATCCTGAG
GTGACAGAGGAGATGGCAGAGTATAATCCCTCTGACAACACACTGTGGGAAACATGTGGCCAAT
ATTTCTATGGTGGTCTCTCCCTCCCAGTCACACGGACACTGTAGAGTGTGCTCGTTACAGTGGG
GATGTTTTGAAGTGGGATGGATGTAGAATTTTTTTTCTTTTTTACATTTTTATTGTTTAGTTTG
TACCCAGAAAAAAATGGTTATTTCATCATGTAACATTCCTATTTTTCTGGAAAGATTTTCTGTT
TTGATGTTCTTGAATTATTTTCTGACCTGGAATTATCCTTTCAAAAAAGAATTCTTAAAATATC
TAGAGCTAAAAAGAACCTAATGAGAAGCTGAAACTGGCCCATTGGTTGAAAGCAGTGATTCTAT
CTTGTTATTTAAATGTGAACATTTACTGTATATTCAGTGAGTTATAGTGTTAATAGTCTTGTGC
TACCCAGCAGGTGTAAAAATTAATAAATATTTTTTTAATAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001414701	(Get FASTA)	NCBI Sequence Viewer
	XP_017451484	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83311	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010423.7
	ENSRNOP00000078533.1
	ENSRNOP00000087282
	ENSRNOP00000087282.1

RefSeq Acc Id:	XP_017451484 ⟸ XM_017595995
- Peptide Label:	isoform X1
- UniProtKB:	D3ZQ79 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDPKDESSHVWPTSADHEQNTAQVHFVPDAGTVAQIVYTDDQVRPPQQVVYTADGASYTSVDGP EHTLVYIHPVEAAQTLFTDPAQVAYVQQDATAQQVLPSIESVDGSDPLATLQNPIARLDAKEEE EEEEDEDEDTEEEEEEDAEDTDVDDWQPDPPRPFDPHDLWCEECNNAHSSVCPKHGPLHPIPNR PVLTRARASLPLVLYIDRFLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDR KDRDLHEDLWFELSDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYA ASYAEFVNQKIHDISEEERKVLREQEKNWPCYECNRRFISSEQLQQHLNSHDEKLDVFTRTRGR GRGRGKRRFGPGRRPGRPPKFIRLEITSENGEKSDDGTQDLLHFPEKEQFDEAEPAALNGLDQP EQASIPVPQLPQETPTSLEQEPETHTLHLQPQQEESLVPTQTTLTADDMRRAKRIRVKKHVRSF HSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMHNPEREAK KADRISRSKTFKPRITSTDYDSFTFKCRLCMMGFRRRGMLVNHLSKRHPDMKIEEVPELTLPII KPNRDYFCQYCDKVYKSASKRKAHILKNHPGAELPPSIRKLRPAGPGEPDPMLSTHTQLTGTIA TPPVCCPHCSKQYSSKTKMVQHIRKKHPEYAQLPNTIHTPLTTAVISATPAVLTTDSATGETVV TTDLLTQAMTELSQTLTTDYRTPQGDYQRIQYIPVSQSASGLQQPQHIQLQVVQVAPATSPHQS QQSTVDVGQLHDPQTYTQHAIQVQHIQVTEPTPTAPSASQVAGQPLSPSAQPVQQGLSPSHIQG SSSTQGQALQQQQNSSVQHTYLPNAWNSFRGYSSEIQMMTLPPGQFVITDSGVATPVTSGQVKA VTSGHYVLSESQPELEEKQASALSGAVQVQPSAHSDSLDSTSPSQQQTTQYIITTTTNGNGGSE VHITKP hide sequence

Ensembl Acc Id:

ENSRNOP00000010423 ⟸ ENSRNOT00000010423

Ensembl Acc Id:

ENSRNOP00000087282 ⟸ ENSRNOT00000094753

Ensembl Acc Id:

ENSRNOP00000078533 ⟸ ENSRNOT00000113679

RefSeq Acc Id:	NP_001414701 ⟸ NM_001427772
- UniProtKB:	D3ZQ79 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type SET

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZQ79-F1-model_v2	AlphaFold	D3ZQ79	1-1146	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560384	AgrOrtholog
BioCyc Gene	G2FUF-31257	BioCyc
Ensembl Genes	ENSRNOG00000007853	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010423.9	UniProtKB/TrEMBL
	ENSRNOT00000094753	ENTREZGENE
	ENSRNOT00000094753.2	UniProtKB/TrEMBL
	ENSRNOT00000113679.2	UniProtKB/TrEMBL
Gene3D-CATH	2.170.270.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	PRDM10_PR/SET	UniProtKB/TrEMBL
	SET_dom	UniProtKB/TrEMBL
	SET_dom_sf	UniProtKB/TrEMBL
	Zinc_finger	UniProtKB/TrEMBL
	Zinc_finger/UBP_domain	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
NCBI Gene	500964	ENTREZGENE
PANTHER	GASTRULA ZINC FINGER PROTEIN XLCGF49.1-LIKE-RELATED	UniProtKB/TrEMBL
	PR DOMAIN ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	PR DOMAIN ZINC FINGER PROTEIN 10	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	PRDM2_PR	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-met	UniProtKB/TrEMBL
PhenoGen	Prdm10	PhenoGen
PROSITE	SET	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007853	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
	SSF82199	UniProtKB/TrEMBL
UniProt	A0A8I5ZN18_RAT	UniProtKB/TrEMBL
	A0A8I6A7P1_RAT	UniProtKB/TrEMBL
	D3ZQ79	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-27	Prdm10	PR/SET domain 10	Prdm10	PR domain 10	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-03	Prdm10	PR domain 10	Prdm10	PR domain containing 10	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-28	Prdm10	PR domain containing 10	RGD1560384_predicted	similar to PR domain containing 10 isoform 2 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560384_predicted	similar to PR domain containing 10 isoform 2 (predicted)	LOC500964	similar to PR domain containing 10 isoform 2	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500964	similar to PR domain containing 10 isoform 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM