Arpc5l-ps1 (actin related protein 2/3 complex, subunit 5-like, pseudogene 1) - Rat Genome Database

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Gene: Arpc5l-ps1 (actin related protein 2/3 complex, subunit 5-like, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Arpc5l-ps1
Name: actin related protein 2/3 complex, subunit 5-like, pseudogene 1
RGD ID: 1560362
Description: ENCODES a pseudogene that exhibits actin binding (inferred); INVOLVED IN Arp2/3 complex-mediated actin nucleation (inferred); regulation of actin filament polymerization (inferred); FOUND IN actin cytoskeleton (inferred); Arp2/3 protein complex (inferred); cytoskeleton (inferred)
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: actin related protein 2/3 complex, subunit 5-like 2; Arpc5l2; ENSRNOG00000067388; LOC501132; RGD1560362; similar to actin related protein 2/3 complex, subunit 5-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Arpc5l  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8952,755,471 - 52,756,468 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl952,754,287 - 52,756,633 (-)EnsemblGRCr8
mRatBN7.2945,263,352 - 45,264,349 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,262,374 - 45,264,366 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl945,262,374 - 45,264,366 (-)NCBImRatBN7.2
UTH_Rnor_WKY_Bbb_1.0957,161,205 - 57,162,202 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd956,526,746 - 56,527,743 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive952,302,058 - 52,303,055 (-)NCBILyon_Normotensive
Lyon_Hypertensive952,437,557 - 52,438,554 (-)NCBILyon_Hypertensive
F344_StmMcwi954,353,860 - 54,354,857 (-)NCBIF344_StmMcwi
Rnor_6.0949,794,998 - 49,795,995 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0949,465,561 - 49,466,558 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4942,194,254 - 42,194,715 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera942,981,507 - 42,982,504 (-)NCBICelera
Cytogenetic Map9q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Arpc5l-ps1
3 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
SGC32156  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2945,263,359 - 45,263,509 (+)MAPPERmRatBN7.2
Rnor_6.0949,795,006 - 49,795,155NCBIRnor6.0
Rnor_5.0949,465,569 - 49,465,718UniSTSRnor5.0
RGSC_v3.4942,193,785 - 42,193,934UniSTSRGSC3.4
Celera942,981,515 - 42,981,664UniSTS
Cytogenetic Map9q22UniSTS
G19389  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2945,263,376 - 45,263,509 (+)MAPPERmRatBN7.2
Rnor_6.0949,795,023 - 49,795,155NCBIRnor6.0
Rnor_5.0949,465,586 - 49,465,718UniSTSRnor5.0
RGSC_v3.4942,193,802 - 42,193,934UniSTSRGSC3.4
Celera942,981,532 - 42,981,664UniSTS
Cytogenetic Map9q22UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_001059654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera942,981,984 - 42,982,445 (-)RGD
RefSeq Acc Id: XM_576552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4942,194,254 - 42,194,715 (-)RGD
Protein Sequences
GenBank Protein A1L108 (Get FASTA)   NCBI Sequence Viewer  

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1L108-F1-model_v2 AlphaFold A1L108 1-153 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560362 AgrOrtholog
BioCyc Gene G2FUF-27675 BioCyc
Ensembl Genes ENSRNOG00000067388 Ensembl
NCBI Gene 501132 ENTREZGENE
PhenoGen Arpc5l-ps1 PhenoGen
RatGTEx ENSRNOG00000067388 RatGTEx
UniProt A1L108 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Arpc5l-ps1  actin related protein 2/3 complex, subunit 5-like, pseudogene 1  ENSRNOG00000067388    Data merged from RGD:150340767 737654 PROVISIONAL
2021-08-31 ENSRNOG00000067388        Symbol and Name status set to provisional 45752 PROVISIONAL
2011-06-07 Arpc5l-ps1  actin related protein 2/3 complex, subunit 5-like, pseudogene 1  Arpc5l2  actin related protein 2/3 complex, subunit 5-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Arpc5l2  actin related protein 2/3 complex, subunit 5-like 2  RGD1560362  similar to actin related protein 2/3 complex, subunit 5-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560362  similar to actin related protein 2/3 complex, subunit 5-like   RGD1560362_predicted  similar to actin related protein 2/3 complex, subunit 5-like (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560362_predicted  similar to actin related protein 2/3 complex, subunit 5-like (predicted)  LOC501132  similar to actin related protein 2/3 complex, subunit 5-like  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501132  similar to actin related protein 2/3 complex, subunit 5-like      Symbol and Name status set to provisional 70820 PROVISIONAL