Tex21 (testis expressed 21) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Tex21 (testis expressed 21) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Tex21
Name: testis expressed 21
RGD ID: 1560347
Description: INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; bisphenol A
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299152; MGC114468; similar to testis expressed gene 21; testis expressed gene 21
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86100,664,982 - 100,705,057 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6100,667,046 - 100,704,925 (-)EnsemblGRCr8
mRatBN7.2694,931,388 - 94,969,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl694,931,392 - 94,969,330 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx695,324,469 - 95,362,433 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0695,622,968 - 95,660,936 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0695,051,779 - 95,089,741 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0699,236,653 - 99,274,350 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl699,236,653 - 99,274,269 (-)Ensemblrn6Rnor6.0
Rnor_5.06108,648,678 - 108,685,353 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4698,798,019 - 98,840,865 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera693,357,208 - 93,394,205 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Variants

.
Variants in Tex21
145 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:31
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000058675
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6100704576101593851Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat

Markers in Region
D6Mit1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86100,704,576 - 100,704,704 (+)Marker Load Pipeline
mRatBN7.2694,968,928 - 94,969,056 (+)MAPPERmRatBN7.2
Rnor_6.0699,273,921 - 99,274,048NCBIRnor6.0
Rnor_5.06108,684,958 - 108,685,085UniSTSRnor5.0
RGSC_v3.4698,840,517 - 98,840,644UniSTSRGSC3.4
RGSC_v3.4698,840,516 - 98,840,644RGDRGSC3.4
Celera693,393,857 - 93,393,984UniSTS
RGSC_v3.1698,843,972 - 98,844,100RGD
Cytogenetic Map6q24UniSTS
AU049679  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2694,968,935 - 94,969,052 (+)MAPPERmRatBN7.2
Rnor_6.0699,273,928 - 99,274,044NCBIRnor6.0
Rnor_5.06108,684,965 - 108,685,081UniSTSRnor5.0
RGSC_v3.4698,840,524 - 98,840,640UniSTSRGSC3.4
Celera693,393,864 - 93,393,980UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
7 6 49 132 84 86 56 58 56 6 250 135 10 114 48 74 30 8 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000058675   ⟹   ENSRNOP00000055470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6100,667,046 - 100,704,925 (-)Ensembl
mRatBN7.2 Ensembl694,931,392 - 94,969,277 (-)Ensembl
Rnor_6.0 Ensembl699,236,653 - 99,274,269 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088808   ⟹   ENSRNOP00000073922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6100,667,046 - 100,703,691 (-)Ensembl
mRatBN7.2 Ensembl694,931,392 - 94,969,330 (-)Ensembl
Rnor_6.0 Ensembl699,236,668 - 99,273,033 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000142886   ⟹   ENSRNOP00000100544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6100,667,046 - 100,703,691 (-)Ensembl
RefSeq Acc Id: NM_001025658   ⟹   NP_001020829
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,704,925 (-)NCBI
mRatBN7.2694,931,388 - 94,969,277 (-)NCBI
Rnor_6.0699,236,653 - 99,274,269 (-)NCBI
Rnor_5.06108,648,678 - 108,685,353 (-)NCBI
RGSC_v3.4698,798,019 - 98,840,865 (-)RGD
Celera693,357,208 - 93,394,205 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240226   ⟹   XP_006240288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,705,057 (-)NCBI
mRatBN7.2694,931,388 - 94,969,409 (-)NCBI
Rnor_6.0699,236,660 - 99,274,350 (-)NCBI
Rnor_5.06108,648,678 - 108,685,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240227   ⟹   XP_006240289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,704,996 (-)NCBI
mRatBN7.2694,931,388 - 94,969,348 (-)NCBI
Rnor_6.0699,236,660 - 99,274,350 (-)NCBI
Rnor_5.06108,648,678 - 108,685,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112011   ⟹   XP_038967939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,705,057 (-)NCBI
mRatBN7.2694,931,388 - 94,969,409 (-)NCBI
RefSeq Acc Id: XM_063261717   ⟹   XP_063117787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,986 - 100,705,057 (-)NCBI
RefSeq Acc Id: XM_063261718   ⟹   XP_063117788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,986 - 100,704,996 (-)NCBI
RefSeq Acc Id: XM_063261719   ⟹   XP_063117789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,987 - 100,705,057 (-)NCBI
RefSeq Acc Id: XM_063261720   ⟹   XP_063117790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,987 - 100,704,996 (-)NCBI
RefSeq Acc Id: XM_063261721   ⟹   XP_063117791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,704,995 (-)NCBI
RefSeq Acc Id: XM_063261722   ⟹   XP_063117792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,982 - 100,705,057 (-)NCBI
RefSeq Acc Id: XM_063261723   ⟹   XP_063117793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,983 - 100,705,057 (-)NCBI
RefSeq Acc Id: XM_063261724   ⟹   XP_063117794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,664,983 - 100,704,996 (-)NCBI
RefSeq Acc Id: XM_063261725   ⟹   XP_063117795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,704,996 (-)NCBI
RefSeq Acc Id: XM_063261726   ⟹   XP_063117796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,667,042 - 100,705,057 (-)NCBI
RefSeq Acc Id: NP_001020829   ⟸   NM_001025658
- UniProtKB: Q4V8E7 (UniProtKB/TrEMBL),   A0A0G2K6S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240288   ⟸   XM_006240226
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006240289   ⟸   XM_006240227
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000055470   ⟸   ENSRNOT00000058675
Ensembl Acc Id: ENSRNOP00000073922   ⟸   ENSRNOT00000088808
RefSeq Acc Id: XP_038967939   ⟸   XM_039112011
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063117792   ⟸   XM_063261722
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117793   ⟸   XM_063261723
- Peptide Label: isoform X6
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117794   ⟸   XM_063261724
- Peptide Label: isoform X6
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117787   ⟸   XM_063261717
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117788   ⟸   XM_063261718
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117789   ⟸   XM_063261719
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117790   ⟸   XM_063261720
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117796   ⟸   XM_063261726
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063117795   ⟸   XM_063261725
- Peptide Label: isoform X7
- UniProtKB: A0A0G2K6S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117791   ⟸   XM_063261721
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000100544   ⟸   ENSRNOT00000142886

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K6S3-F1-model_v2 AlphaFold A0A0G2K6S3 1-565 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694673
Promoter ID:EPDNEW_R5196
Type:single initiation site
Name:Tex21_1
Description:testis expressed 21
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0699,274,334 - 99,274,394EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560347 AgrOrtholog
BioCyc Gene G2FUF-37068 BioCyc
Ensembl Genes ENSRNOG00000038496 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000058675 ENTREZGENE
  ENSRNOT00000058675.5 UniProtKB/TrEMBL
  ENSRNOT00000088808.3 UniProtKB/TrEMBL
  ENSRNOT00000142886 ENTREZGENE
  ENSRNOT00000142886.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7454996 IMAGE-MGC_LOAD
InterPro CCDC170-like UniProtKB/TrEMBL
KEGG Report rno:299152 UniProtKB/TrEMBL
MGC_CLONE MGC:114468 IMAGE-MGC_LOAD
NCBI Gene 299152 ENTREZGENE
PANTHER PTHR18863 UniProtKB/TrEMBL
  TESTIS-EXPRESSED GENE 21 UniProtKB/TrEMBL
PhenoGen Tex21 PhenoGen
RatGTEx ENSRNOG00000038496 RatGTEx
UniProt A0A0G2K6S3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KZE7_RAT UniProtKB/TrEMBL
  Q4V8E7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-06-09 Tex21  testis expressed 21  Tex21  testis expressed gene 21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Tex21  testis expressed gene 21  LOC299152  similar to testis expressed gene 21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC299152  similar to testis expressed gene 21      Symbol and Name status set to provisional 70820 PROVISIONAL