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Gene: Nphp4 (nephrocystin 4) Rattus norvegicus

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Symbol:

Nphp4

Name:

nephrocystin 4

RGD ID:

1560172

Description:

Predicted to be involved in negative regulation of canonical Wnt signaling pathway; positive regulation of bicellular tight junction assembly; and protein localization to ciliary transition zone. Predicted to act upstream of or within several processes, including flagellated sperm motility; photoreceptor cell maintenance; and photoreceptor cell outer segment organization. Located in ciliary basal body. Human ortholog(s) of this gene implicated in Joubert syndrome 4; Senior-Loken syndrome; congenital heart disease; nephronophthisis; and nephronophthisis 4. Orthologous to human NPHP4 (nephrocystin 4); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313749; MGC125230; nephrocystin-4; nephronophthisis 4; nephronophthisis 4 (juvenile) homolog; nephronophthisis 4 (juvenile) homolog (human); similar to mKIAA0673 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NPHP4 (nephrocystin 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Nphp4 (nephronophthisis 4 (juvenile) homolog (human))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nphp4 (nephrocystin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NPHP4 (nephrocystin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NPHP4 (nephrocystin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nphp4 (nephrocystin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NPHP4 (nephrocystin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NPHP4 (nephrocystin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nphp4 (nephrocystin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Nphp4 (nephrocystin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NPHP4 (nephrocystin 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nphp4 (nephronophthisis 4 (juvenile) homolog (human))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nphp4 (nephronophthisis 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nphp-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	nphp-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	nphp4.2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	nphp4.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	168,270,522 - 168,356,393 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	168,271,073 - 168,358,242 (+)	Ensembl				GRCr8
mRatBN7.2	5	162,986,157 - 163,073,708 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	162,988,370 - 163,073,706 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	165,691,473 - 165,776,590 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	167,513,074 - 167,598,197 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	167,475,281 - 167,560,405 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	169,647,581 - 169,744,662 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	169,659,188 - 169,744,660 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	173,201,362 - 173,298,422 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	169,711,038 - 169,797,486 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	161,218,067 - 161,302,859 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atypical hemolytic-uremic syndrome (ISO)

Bardet-Biedl syndrome (ISO)

CAKUT (ISO)

cholestasis (ISO)

congenital heart disease (ISO)

focal segmental glomerulosclerosis (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

infertility (ISO)

Joubert syndrome 4 (ISO)

kidney disease (ISO)

Leber congenital amaurosis (ISO)

Lynch syndrome 1 (ISO)

nephronophthisis (ISO)

nephronophthisis 1 (ISO)

nephronophthisis 4 (ISO,ISS)

optic atrophy (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 1 (ISO)

Senior-Loken syndrome (ISO)

Senior-Loken Syndrome 4 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP,ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

coumarin (ISO)

Cuprizon (EXP)

decabromodiphenyl ether (EXP)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

glycidol (EXP)

hydralazine (ISO)

L-methionine (ISO)

mercury dibromide (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP)

permethrin (EXP)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

flagellated sperm motility (ISO)

negative regulation of canonical Wnt signaling pathway (IBA,IEA,ISO)

photoreceptor cell maintenance (ISO)

photoreceptor cell outer segment organization (ISO)

positive regulation of bicellular tight junction assembly (IEA,ISO)

protein localization to ciliary transition zone (IBA)

retina development in camera-type eye (ISO)

Cellular Component

cell-cell junction (IEA,ISO)

centriole (IEA,ISO)

centrosome (IEA,ISO)

ciliary basal body (IBA,IDA)

ciliary base (IBA,IEA,ISO)

ciliary transition zone (IBA,IEA,ISO)

cytoplasm (IEA,ISO)

cytoskeleton (IEA)

non-motile cilium (IBA,IEA)

photoreceptor connecting cilium (IEA,ISO)

photoreceptor distal connecting cilium (IEA,ISO)

ribbon synapse (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Mutations in the gene encoding the basal body protein RPGRIP1L, a nephrocystin-4 interactor, cause Joubert syndrome.	Arts HH, etal., Nat Genet. 2007 Jul;39(7):882-8. Epub 2007 Jun 10.
2.	NPHP4 variants are associated with pleiotropic heart malformations.	French VM, etal., Circ Res. 2012 Jun 8;110(12):1564-74. doi: 10.1161/CIRCRESAHA.112.269795. Epub 2012 May 1.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Clinical and histological presentation of 3 siblings with mutations in the NPHP4 gene.	Hoefele J, etal., Am J Kidney Dis. 2004 Feb;43(2):358-64.
5.	Mutational analysis of the NPHP4 gene in 250 patients with nephronophthisis.	Hoefele J, etal., Hum Mutat. 2005 Apr;25(4):411.
6.	Evidence of oligogenic inheritance in nephronophthisis.	Hoefele J, etal., J Am Soc Nephrol. 2007 Oct;18(10):2789-95. Epub 2007 Sep 12.
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	A gene mutated in nephronophthisis and retinitis pigmentosa encodes a novel protein, nephroretinin, conserved in evolution.	Otto E, etal., Am J Hum Genet. 2002 Nov;71(5):1161-7. Epub 2002 Aug 29.
9.	Mutation analysis in nephronophthisis using a combined approach of homozygosity mapping, CEL I endonuclease cleavage, and direct sequencing.	Otto EA, etal., Hum Mutat. 2008 Mar;29(3):418-26.
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Comprehensive gene review and curation	RGD comprehensive gene curation
13.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19755384	PMID:20169535	PMID:21052544	PMID:21078623	PMID:21399614	PMID:21565611	PMID:22654112	PMID:29899041

Genomics

Comparative Map Data

Nphp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	168,270,522 - 168,356,393 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	168,271,073 - 168,358,242 (+)	Ensembl				GRCr8
mRatBN7.2	5	162,986,157 - 163,073,708 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	162,988,370 - 163,073,706 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	165,691,473 - 165,776,590 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	167,513,074 - 167,598,197 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	167,475,281 - 167,560,405 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	169,647,581 - 169,744,662 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	169,659,188 - 169,744,660 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	173,201,362 - 173,298,422 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	169,711,038 - 169,797,486 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	161,218,067 - 161,302,859 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

NPHP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	5,862,811 - 5,992,425 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	5,862,804 - 5,993,455 (-)	Ensembl			hg38	GRCh38
GRCh37	1	5,922,871 - 6,052,485 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	5,845,457 - 5,975,118 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	5,857,135 - 5,986,797	NCBI
Celera	1	5,037,702 - 5,167,377 (-)	NCBI		Celera
Cytogenetic Map	1	p36.31	NCBI
HuRef	1	5,071,502 - 5,201,940 (-)	NCBI		HuRef
CHM1_1	1	5,911,568 - 6,041,216 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	5,387,041 - 5,518,608 (-)	NCBI		T2T-CHM13v2.0

Nphp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	152,561,163 - 152,647,641 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	152,561,163 - 152,647,640 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	152,476,706 - 152,563,184 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	152,476,706 - 152,563,183 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	151,852,251 - 151,937,293 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	151,321,942 - 151,406,934 (+)	NCBI		MGSCv36	mm8
Celera	4	154,764,281 - 154,849,333 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	83.14	NCBI

Nphp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	6,448,442 - 6,547,488 (+)	Ensembl
ChiLan1.0	NW_004955486	6,442,058 - 6,547,451 (+)	NCBI	ChiLan1.0	ChiLan1.0

NPHP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	222,234,457 - 222,370,369 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	220,876,170 - 221,012,339 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	4,620,593 - 4,756,363 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	5,878,739 - 6,012,869 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	5,878,739 - 6,012,864 (-)	Ensembl			panPan2	panpan1.1

NPHP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	59,819,236 - 59,936,220 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	59,814,274 - 59,929,386 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	59,830,501 - 59,946,241 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	60,022,493 - 60,152,631 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	60,035,558 - 60,152,688 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	60,035,853 - 60,151,600 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	59,902,253 - 60,018,001 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	60,303,659 - 60,419,425 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Nphp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	30,316,914 - 30,418,643 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936623	802,152 - 904,198 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NPHP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	66,815,281 - 66,928,146 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	66,815,282 - 66,928,245 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	61,821,151 - 61,829,018 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NPHP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	125,739,075 - 125,878,088 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	125,744,295 - 125,874,482 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	29,894,007 - 30,031,596 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nphp4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	5,327,038 - 5,432,901 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624818	5,325,946 - 5,432,290 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Nphp4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	8,178,465 - 8,206,761 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	54
Count of miRNA genes:	46
Interacting mature miRNAs:	54
Transcripts:	ENSRNOT00000066623
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1549904	Neuinf1	Neuroinflammation QTL 1	3	0	nervous system integrity trait (VT:0010566)	blood T lymphocyte count (CMO:0000110)	5	160111176	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	156289283	171137955	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	160071170	172129029	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat

Markers in Region

D5Rat244

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	163,026,006 - 163,026,191 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	169,696,938 - 169,697,122	NCBI	Rnor6.0
Rnor_5.0	5	173,250,700 - 173,250,884	UniSTS	Rnor5.0
RGSC_v3.4	5	169,748,820 - 169,749,004	UniSTS	RGSC3.4
Celera	5	161,255,576 - 161,255,760	UniSTS
SHRSP x BN Map	5	97.9299	UniSTS
SHRSP x BN Map	5	97.9299	RGD
Cytogenetic Map	5	q36	UniSTS

RH94672

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	162,987,799 - 162,987,983 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	169,658,618 - 169,658,801	NCBI	Rnor6.0
Rnor_5.0	5	173,212,381 - 173,212,564	UniSTS	Rnor5.0
RGSC_v3.4	5	169,710,468 - 169,710,651	UniSTS	RGSC3.4
Celera	5	161,217,497 - 161,217,680	UniSTS
RH 3.4 Map	5	1140.7	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	86	59	6	350	186	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC107905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066623 ⟹ ENSRNOP00000063188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	168,271,073 - 168,358,242 (+)	Ensembl
mRatBN7.2 Ensembl	5	162,988,370 - 163,073,706 (+)	Ensembl
Rnor_6.0 Ensembl	5	169,659,188 - 169,744,660 (+)	Ensembl

RefSeq Acc Id:

NM_001037650 ⟹ NP_001032739

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	168,271,073 - 168,356,393 (+)	NCBI
mRatBN7.2	5	162,988,370 - 163,073,706 (+)	NCBI
Rnor_6.0	5	169,659,188 - 169,744,660 (+)	NCBI
Rnor_5.0	5	173,201,362 - 173,298,422 (+)	NCBI
RGSC_v3.4	5	169,711,038 - 169,797,486 (+)	RGD
Celera	5	161,218,067 - 161,302,859 (+)	RGD

Sequence:

show sequence

GGTTGCCAGCTGAAGTTCGGCTGCTGGGATTCCTTCGGTTAGTCTACTGACCCTGTGTGCGCAG
CCGTCCGGGGCTGAAACCGATGCTGTGAGCTCGCCAGAGCCTTGAAGATGCTCACAGTCTGGTG
TACGCGCCTCTATCCCAGCCCTAGGCCGTGCAGCTCTCTTAGGCCCCTGCGGCCCTCGATGCAC
TGTGAGGCCCTTGGCCCAGTCCAAGTCCAGCCCTCGGGGCGCAGGGCTGACCTCCTCCTCCACT
GCTCGGAATTGCAACCCACACTGCTGTCCGGGTTCCCAATGGTGCAGGGAGTCCCGGAGACCCA
CGTGAGGTTGGACAGGCAGCATGGATGACTGGCACAGAGCCTTCACCCAGAACACACTGGTCCC
TCCCCACCCGCAGAGAGCGCGGCAGTTTGGGAAGGAGTCCACGGCGTTCCAGTGCATCCTGAAG
TGGCTTGATGGGCCACTCATTAAGCAGGGAATCCTAGACATGCTGTCTGAGCTTGAATGCCACC
TGCGAGTGTCTCTCTTCGACGTCACCTACAAACATTTCTTCGGGAGGACGTGGAAAACCACAGT
GAAGCCCACCAATCAGCTCTCTAAGCAGCCACCCAGGATCCTCTTCAATGAGCCCTTGTACTTC
CACACAACCTTGAGCCACCCCAGCATCGTGGCTGTAATAGAAGTGGTCGCTGAAGGCAGGAAGA
GGGACGGTGCCCTGCAGGTGCTGTCCTGTGGGTTTGGAATTCTTCGAATTTTTGGCAATAAGCC
GGAATCTCCCACCTCTGCAGGCCAGGACAAACGGTTGAGGCTGTATCATGGTACCCCCAGAGCC
CTTCTGCACCCACTTCTCCAGGATCCCATAGAACAGAACAGGTACATGACAATGATGGAAAACT
GTAGCCTGCAGTATACCCTGAAGCCACACCCGCCCCTGGAGCCCGCCTTCCACCTGCTCCCCGA
GAACTTCCTGATCTCCGGTCTCCAGCAGATCCCTGGCCTCCTCCCACCTCATGGAGACACGGGT
GATGCCCTGAGGAAGCCTCGCTTCCAGAAGCCCACCACATTGCACCTAGATGACCTCTTCTTCA
CCCTGTACCCCTCCCTGGAGAAGTTTGAGGAGGAACTTGTGCAGCTGCTCATCAGCGACCACTT
CCGGGAGGGGGTTGGCCTGCTAGATAGCGGCACCCTAGAGGTCTTGGAGCGGCGCCTGCATGTC
TGTGTCCACAACGGTCTGGGCTTCGTGCACAGGCCACAGGTGGTTGTGCTTGTACCTGAGATGG
ACATGACCTTGACGCGCTCGGCCAGCTTCAGCAGGAGAATCACTGCCTCTTCTAAGAGCAGCTC
TGGAAATCAGGCTCTGGTTTTGAGAAGCCACCTGAGACTCCCGGAGATGGTCAATCACCCATCG
TTTGCCATCGTCTTCCAGCTGGAGTACGTGTTCAACAGCCCCTCAGGAGCGGACGGCAGTGCCA
GCTCATCCACCTCTCTGTCCAGCTTGGCGTGCATGCACATGGTTCGATGGGCTGTTTGGAACCC
CGATCTGGAAGCAGGCCCGGGAAAGGTGACGCTGCCTCTTCAGGGTGGGGTACAGCACAACCCC
TCACGATGTCTGGTCTATAAGGTGCCTTCGGCTAGCATGAGCTCTGAGGAGGTGAAGCAGGTGG
AATCCGGAACCATCCAGTTCCACTTCTCACTGAGCTCAGATGCCCTTACAGAGCATGCCAACGG
CCCCAGGGCAGGGCGGCGCTCCACCAGAAAGGCACTAACGTCCCCTTCAGGCACACCAGCACTG
GCAGCCCGGGATCTTGCTGCGATACAGGACTCTCCTGTGGGCCCAGGGCTCTCGCTCTCCCAGC
TGGCGGCCTCCCCACAGTCTCTGGCCTCACAAAGATCTTTCAAGCCTCCTCCTCAGCCCCTGGA
TGGCTCTCAGTCCCCAGAGGGTCCCCAGCTCCAAGCAGGATCTGTATTAGAGAGCAGGATCTCT
CATCTGGAAGCTGACCTGAGCCAGCCGCCCTTCTCGGTGCAGGGGACGCCCACTGTAGAACACC
TACAGGAACTTCCCTTCACTCCTTTGCATGCCCCCATTGTGGTGGGAGCCCAGACCAGGAGCTC
CAGAAGCCAGCTCTCCAGAGCTGCCATGGTCCTCCTGCAGTCTTCCGGCTTCCCTGAGATCCTT
GATGCCAGGCAGCAGCCGGTGGAGGCCGTCAATCCCATGGATCCTGTGAGGTTCAACCCTCAGA
AGGAGGAGTCAGACTGCCTTCTAGGGAATGAGATCGTGCTGCAGTTTCTTGCCTTCAGCAGAGC
GGCCCAGGACTGCCCGGGAGCGCCGTGGCCACAGACTGTGTATTTCACCTTCCAGTTCTACCGT
TTCCCACCCGAGACCACGCCACGCCTGCAGCTGGTCAAACTGGACAGGACAGGCAAGAACGGCT
CTGCCTCCCTGTCTCACATCCTGGTCCACATCAATAAAGACGGCTCCTTTGACGCTGGCTCCCC
TGGCTTCCAGCTGAGGTACATGGTGGATCCCGGGTTCCTGAAGCCAGGAGAGCAGCGCTGGTTC
GCCCAGTACCTGGCCGCTCAGACGCTGCAAGTCGACGTCTGGGATGGAGACTCCTTGCTCCTCA
TTGGGTCTGCCGGCATCCAGATGAAGCACCTCCTCCGCCAAGGGCGGCCAGCTGTTCAGGTCTC
ACATGAACTGGAGGTCGTGGCCACTGAGTACGAACAGGAAATGATGGTGGTGAGCGGCGACGTG
GCGGGCTTCGGCAGCGTCAAGCCCATCGGAGTCCACACGGTCGTGAAGGGCCGGCTGCACCTGA
CCTTGGCCAACGTGGGTCACGAGTGTGAACCGAGAGCAAGAGGTTCCAACGCGCTGCCACCATC
CAGGTCCCGGGTCATCTCAAATAATGGAGCCAGCTTCTTCTCTGGGGGAAGCCTCCTCATACCA
GGAGGCCCCAAGCGAAAGCGTGTGGTTCAAGCCCAGAAGCTGGCTGATGTGGACAGTGAGCTGG
CCGCCATGCTGCTGACCCACACTCGAGCTGGCCAGGGGCCCCAGGCTGTGGGCCAGGAGGCAGA
CGCTGTGCACAGGCGCAAGCTGGAAAGGATGCGGCTGGTGCGCCTGCAGGAGGCCGGAGGGGAC
TCTGACAGTCGCAGGATCAGCGTGCTGGCCCGACACAGTGTCCGTGCACAGCACTCACGGGACC
TGCAGGTCATCGACGCCTACCGGGAACGGACCAAGGCTGAGAACATTGCCAGCGTGTTGAGCCA
GGCCATCACCACACACCACACACTGTATGCCACGCTGGGCACGGCTGAGTTCTTCGAGTTTGCA
CTTAAAAACCCACACAACACTCAGCACACGGTGGCCATCGAGATTGACAGCCCTGAGCTCAGCA
TCATCCTGGACAGCCAGGAGTGGAGGTACTTCAAGGAGGCCACTGGCCTGCTCACACCCCTGGA
GGAGGACATGTTCCACCTGCGTGGGAGCCTGGCACCCCAGCTCTACCTGCGGCCCCGGGAGACT
GCCCACATCCCCTTCAAGTTCCAGAACTTCTCTGTGGGCCCACCTGCTCCGACACAGGCCCCTG
CGGAGGTGATCTCAGAGAAGGATGCAGAGTCTGGACCCCATTGGAAGTGCAGTGCCATGCCTAC
CAAACACGCCAAGGTCCTTTTCCGGGTGGAGACCGGCCAGCTCATTGCTGTGCTCTGCCTGACC
GTGGAGCCCCAGCCCCACGTGGTGGACCAGGTTTTCCGTTTCTACCACCCAGAACTCACCTTCC
TGAAGAAGGCCATCCGCCTGCCGCCCTGGCACACGCTTCCAGGTGCTCCCGTGGGGATGCCTGG
CGAGGACCCCCCAGTCCACGTTCGATGCAGCGACCCGAATGTCATCTGCGAGGCCCAGAACGTG
GGCCTTGGTGAGCCGAGGGACGTGTTCCTTAAGGTGGCCAGCGGTCCAAGCCCGGAGATCAAAG
ACTTCTTTGTCGTCATCTATGCGGATCGCTGGCTGGCGGTGCCCGTGCAGACATGGCAGGTCTG
CCTCCACTCCCTGCAGCGCGTGGATGTCTCCTGTGTCGCAGGGCAGATGACCCGTCTGTCCCTC
GTCCTACGGGGGACGCAGACCGTTAGGAAAGTGAGAGCTTTCACCTCCCACCCTCAGGAGCTGA
AGACAGACCCCGCTGGTGTCTTTGTGTTACCACCTCACGGGGTGCAGGACCTGCATGTGGGCGT
GAGGCCAAGGAGGGCGGGCAGCCGCTTCATCCATCTCAACCTGGTGGACGTCGACTACCACCAG
CTGGTCGCGTCGTGGCTCGTGTGCCTGTCCTGCCGCCAGCCCCTCATTTCCAAGGCCTTCGAGA
TCACCATGGCAGCAGGCGAAGGGAAGGGTGCCAACAAGCGGATCACCTACACCAACCCCTACCC
TTCTCGGAGGACCTACCGTCTGCACAGTGACCGGCCAGACCTGCTGCATTTCAAGGAGGACTCC
TTCCAGGTGGCCGGAGGGGAGACCTACACCATCGGGCTGCGGTTCTTGCCGAGTGGCAGCGCCG
GGCAGGAGGAGATCCTGATCTACATCAATGACCAGGACGACAAGAATGAAGAGACATTCTGTGT
GAAGGTCCTCTACCAGTGAGGGGATGGCTGTGAGGCCAGCGCCCCTTCCAGAGTGCCCCTCCCT
GCAGACATCACTGTGACTCCAGGACTGGTCTGCGTAGCCCATGGAGCTGACTGAGTGCAGGGAG
ACAAAGGCTACCCTCGCCATGGTGTAGCATAATCCCATGAGCGAATGTGACCTCCGGGGTCACG
GCAGTGGCTCACTCTGCCTATGGCACTCACAAGGTTGTGTCACACCCCATGACTCTCAGGCTGT
CACCGTCTAGAACAAACTGTTTTATAAATCATTTCCAATGACAAAATTATGTTTTTCTTTCTAG
ATTTTTAAAAAATGAACACAATATATTTTCATTTGCTATGTATTTTATACTGGAATTCCCTTGT
ATATATATTTTTTAAGTTATTGAATGAAGCACCTCACTTCGGCTG

hide sequence

RefSeq Acc Id:

XM_006239465 ⟹ XP_006239527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	168,270,522 - 168,356,391 (+)	NCBI
mRatBN7.2	5	162,988,008 - 163,073,705 (+)	NCBI
Rnor_6.0	5	169,658,875 - 169,744,662 (+)	NCBI
Rnor_5.0	5	173,201,362 - 173,298,422 (+)	NCBI

Sequence:

show sequence

CCTCGGGTTCCGCTGGGCACCGGCAGCCCGATCGCTGGATCCACGGTGCGGGACCTGTTCCGTA
GCGTGGATCTCGTGCCCGTCTCCTAGATGGTGCAGGGAGTCCCGGAGACCCACGTGAGGTTGGA
CAGGCAGCATGGATGACTGGCACAGAGCCTTCACCCAGAACACACTGGTCCCTCCCCACCCGCA
GAGAGCGCGGCAGTTTGGGAAGGAGTCCACGGCGTTCCAGTGCATCCTGAAGTGGCTTGATGGG
CCACTCATTAAGCAGGGAATCCTAGACATGCTGTCTGAGCTTGAATGCCACCTGCGAGTGTCTC
TCTTCGACGTCACCTACAAACATTTCTTCGGGAGGACGTGGAAAACCACAGTGAAGCCCACCAA
TCAGCTCTCTAAGCAGCCACCCAGGATCCTCTTCAATGAGCCCTTGTACTTCCACACAACCTTG
AGCCACCCCAGCATCGTGGCTGTAATAGAAGTGGTCGCTGAAGGCAGGAAGAGGGACGGTGCCC
TGCAGGTGCTGTCCTGTGGGTTTGGAATTCTTCGAATTTTTGGCAATAAGCCGGAATCTCCCAC
CTCTGCAGGCCAGGACAAACGGTTGAGGCTGTATCATGGTACCCCCAGAGCCCTTCTGCACCCA
CTTCTCCAGGATCCCATAGAACAGAACAGGTACATGACAATGATGGAAAACTGTAGCCTGCAGT
ATACCCTGAAGCCACACCCGCCCCTGGAGCCCGCCTTCCACCTGCTCCCCGAGAACTTCCTGAT
CTCCGGTCTCCAGCAGATCCCTGGCCTCCTCCCACCTCATGGAGACACGGGTGATGCCCTGAGG
AAGCCTCGCTTCCAGAAGCCCACCACATTGCACCTAGATGACCTCTTCTTCACCCTGTACCCCT
CCCTGGAGAAGTTTGAGGAGGAACTTGTGCAGCTGCTCATCAGCGACCACTTCCGGGAGGGGGT
TGGCCTGCTAGATAGCGGCACCCTAGAGGTCTTGGAGCGGCGCCTGCATGTCTGTGTCCACAAC
GGTCTGGGCTTCGTGCACAGGCCACAGGTGGTTGTGCTTGTACCTGAGATGGACATGACCTTGA
CGCGCTCGGCCAGCTTCAGCAGGAGAATCACTGCCTCTTCTAAGAGCAGCTCTGGAAATCAGGC
TCTGGTTTTGAGAAGCCACCTGAGACTCCCGGAGATGGTCAATCACCCATCGTTTGCCATCGTC
TTCCAGCTGGAGTACGTGTTCAACAGCCCCTCAGGAGCGGACGGCAGTGCCAGCTCATCCACCT
CTCTGTCCAGCTTGGCGTGCATGCACATGGTTCGATGGGCTGTTTGGAACCCCGATCTGGAAGC
AGGCCCGGGAAAGGTGACGCTGCCTCTTCAGGGTGGGGTACAGCACAACCCCTCACGATGTCTG
GTCTATAAGGTGCCTTCGGCTAGCATGAGCTCTGAGGAGGTGAAGCAGGTGGAATCCGGAACCA
TCCAGTTCCACTTCTCACTGAGCTCAGATGCCCTTACAGAGCATGCCAACGGCCCCAGGGCAGG
GCGGCGCTCCACCAGAAAGGCACTAACGTCCCCTTCAGGCACACCAGCACTGGCAGCCCGGGAT
CTTGCTGCGATACAGGACTCTCCTGTGGGCCCAGGGCTCTCGCTCTCCCAGCTGGCGGCCTCCC
CACAGTCTCTGGCCTCACAAAGATCTTTCAAGCCTCCTCCTCAGCCCCTGGATGGCTCTCAGTC
CCCAGAGGGTCCCCAGCTCCAAGCAGGATCTGTATTAGAGAGCAGGATCTCTCATCTGGAAGCT
GACCTGAGCCAGCCGCCCTTCTCGGTGCAGGGGACGCCCACTGTAGAACACCTACAGGAACTTC
CCTTCACTCCTTTGCATGCCCCCATTGTGGTGGGAGCCCAGACCAGGAGCTCCAGAAGCCAGCT
CTCCAGAGCTGCCATGGTCCTCCTGCAGTCTTCCGGCTTCCCTGAGATCCTTGATGCCAGGCAG
CAGCCGGTGGAGGCCGTCAATCCCATGGATCCTGTGAGGTTCAACCCTCAGAAGGAGGAGTCAG
ACTGCCTTCTAGGGAATGAGATCGTGCTGCAGTTTCTTGCCTTCAGCAGAGCGGCCCAGGACTG
CCCGGGAGCGCCGTGGCCACAGACTGTGTATTTCACCTTCCAGTTCTACCGTTTCCCACCCGAG
ACCACGCCACGCCTGCAGCTGGTCAAACTGGACAGGACAGGCAAGAACGGCTCTGCCTCCCTGT
CTCACATCCTGGTCCACATCAATAAAGACGGCTCCTTTGACGCTGAATTAATGATCGCGCTTCC
TCAGGAAGATGAAGGCAGAGGCCGCAGTCTGGCTACCATGTTAGTCAGCTCGATGGGCTCCCCT
GGCTTCCAGCTGAGGTACATGGTGGATCCCGGGTTCCTGAAGCCAGGAGAGCAGCGCTGGTTCG
CCCAGTACCTGGCCGCTCAGACGCTGCAAGTCGACGTCTGGGATGGAGACTCCTTGCTCCTCAT
TGGGTCTGCCGGCATCCAGATGAAGCACCTCCTCCGCCAAGGGCGGCCAGCTGTTCAGGTCTCA
CATGAACTGGAGGTCGTGGCCACTGAGTACGAACAGGAAATGATGGTGGTGAGCGGCGACGTGG
CGGGCTTCGGCAGCGTCAAGCCCATCGGAGTCCACACGGTCGTGAAGGGCCGGCTGCACCTGAC
CTTGGCCAACGTGGGTCACGAGTGTGAACCGAGAGCAAGAGGTTCCAACGCGCTGCCACCATCC
AGGTCCCGGGTCATCTCAAATAATGGAGCCAGCTTCTTCTCTGGGGGAAGCCTCCTCATACCAG
GAGGCCCCAAGCGAAAGCGTGTGGTTCAAGCCCAGAAGCTGGCTGATGTGGACAGTGAGCTGGC
CGCCATGCTGCTGACCCACACTCGAGCTGGCCAGGGGCCCCAGGCTGTGGGCCAGGAGGCAGAC
GCTGTGCACAGGCGCAAGCTGGAAAGGATGCGGCTGGTGCGCCTGCAGGAGGCCGGAGGGGACT
CTGACAGTCGCAGGATCAGCGTGCTGGCCCGACACAGTGTCCGTGCACAGCACTCACGGGACCT
GCAGGTCATCGACGCCTACCGGGAACGGACCAAGGCTGAGAACATTGCCAGCGTGTTGAGCCAG
GCCATCACCACACACCACACACTGTATGCCACGCTGGGCACGGCTGAGTTCTTCGAGTTTGCAC
TTAAAAACCCACACAACACTCAGCACACGGTGGCCATCGAGATTGACAGCCCTGAGCTCAGCAT
CATCCTGGACAGCCAGGAGTGGAGGTACTTCAAGGAGGCCACTGGCCTGCTCACACCCCTGGAG
GAGGACATGTTCCACCTGCGTGGGAGCCTGGCACCCCAGCTCTACCTGCGGCCCCGGGAGACTG
CCCACATCCCCTTCAAGTTCCAGAACTTCTCTGTGGGCCCACCTGCTCCGACACAGGCCCCTGC
GGAGGTGATCTCAGAGAAGGATGCAGAGTCTGGACCCCATTGGAAGTGCAGTGCCATGCCTACC
AAACACGCCAAGGTCCTTTTCCGGGTGGAGACCGGCCAGCTCATTGCTGTGCTCTGCCTGACCG
TGGAGCCCCAGCCCCACGTGGTGGACCAGGTTTTCCGTTTCTACCACCCAGAACTCACCTTCCT
GAAGAAGGCCATCCGCCTGCCGCCCTGGCACACGCTTCCAGGTGCTCCCGTGGGGATGCCTGGC
GAGGACCCCCCAGTCCACGTTCGATGCAGCGACCCGAATGTCATCTGCGAGGCCCAGAACGTGG
GCCTTGGTGAGCCGAGGGACGTGTTCCTTAAGGTGGCCAGCGGTCCAAGCCCGGAGATCAAAGA
CTTCTTTGTCGTCATCTATGCGGATCGCTGGCTGGCGGTGCCCGTGCAGACATGGCAGGTCTGC
CTCCACTCCCTGCAGCGCGTGGATGTCTCCTGTGTCGCAGGGCAGATGACCCGTCTGTCCCTCG
TCCTACGGGGGACGCAGACCGTTAGGAAAGTGAGAGCTTTCACCTCCCACCCTCAGGAGCTGAA
GACAGACCCCGCTGGTGTCTTTGTGTTACCACCTCACGGGGTGCAGGACCTGCATGTGGGCGTG
AGGCCAAGGAGGGCGGGCAGCCGCTTCATCCATCTCAACCTGGTGGACGTCGACTACCACCAGC
TGGTCGCGTCGTGGCTCGTGTGCCTGTCCTGCCGCCAGCCCCTCATTTCCAAGGCCTTCGAGAT
CACCATGGCAGCAGGCGAAGGGAAGGGTGCCAACAAGCGGATCACCTACACCAACCCCTACCCT
TCTCGGAGGACCTACCGTCTGCACAGTGACCGGCCAGACCTGCTGCATTTCAAGGAGGACTCCT
TCCAGGTGGCCGGAGGGGAGACCTACACCATCGGGCTGCGGTTCTTGCCGAGTGGCAGCGCCGG
GCAGGAGGAGATCCTGATCTACATCAATGACCAGGACGACAAGAATGAAGAGACATTCTGTGTG
AAGGTCCTCTACCAGTGAGGGGATGGCTGTGAGGCCAGCGCCCCTTCCAGAGTGCCCCTCCCTG
CAGACATCACTGTGACTCCAGGACTGGTCTGCGTAGCCCATGGAGCTGACTGAGTGCAGGGAGA
CAAAGGCTACCCTCGCCATGGTGTAGCATAATCCCATGAGCGAATGTGACCTCCGGGGTCACGG
CAGTGGCTCACTCTGCCTATGGCACTCACAAGGTTGTGTCACACCCCATGACTCTCAGGCTGTC
ACCGTCTAGAACAAACTGTTTTATAAATCATTTCCAATGACAAAATTATGTTTTTCTTTCTAGA
TTTTTAAAAAATGAACACAATATATTTTCATTTGCTATGTATTTTATACTGGAATTCCCTTGTA
TATATATTTTTTAAGTTATTGAATGAAGCACCTCACTTCGGCTGTT

hide sequence

RefSeq Acc Id:

XM_017593435 ⟹ XP_017448924

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	168,270,738 - 168,356,391 (+)	NCBI
mRatBN7.2	5	162,988,035 - 163,073,705 (+)	NCBI
Rnor_6.0	5	169,658,903 - 169,744,662 (+)	NCBI

Sequence:

show sequence

CGATCGCTGGATCCACGGTGCGGGACCTGTTCCGTAGCGTGGATCTCGTGCCCGTCTCCTAGGT
AACGCGCCAGCGGTGGACTGAACCAAATGGTGCAGGGAGTCCCGGAGACCCACGTGAGGTTGGA
CAGGCAGCATGGATGACTGGCACAGAGCCTTCACCCAGAACACACTGGTCCCTCCCCACCCGCA
GAGAGCGCGGCAGTTTGGGAAGGAGTCCACGGCGTTCCAGTGCATCCTGAAGTGGCTTGATGGG
CCACTCATTAAGCAGGGAATCCTAGACATGCTGTCTGAGCTTGAATGCCACCTGCGAGTGTCTC
TCTTCGACGTCACCTACAAACATTTCTTCGGGAGGACGTGGAAAACCACAGTGAAGCCCACCAA
TCAGCTCTCTAAGCAGCCACCCAGGATCCTCTTCAATGAGCCCTTGTACTTCCACACAACCTTG
AGCCACCCCAGCATCGTGGCTGTAATAGAAGTGGTCGCTGAAGGCAGGAAGAGGGACGGTGCCC
TGCAGGTGCTGTCCTGTGGGTTTGGAATTCTTCGAATTTTTGGCAATAAGCCGGAATCTCCCAC
CTCTGCAGGCCAGGACAAACGGTTGAGGCTGTATCATGGTACCCCCAGAGCCCTTCTGCACCCA
CTTCTCCAGGATCCCATAGAACAGAACAGGTACATGACAATGATGGAAAACTGTAGCCTGCAGT
ATACCCTGAAGCCACACCCGCCCCTGGAGCCCGCCTTCCACCTGCTCCCCGAGAACTTCCTGAT
CTCCGGTCTCCAGCAGATCCCTGGCCTCCTCCCACCTCATGGAGACACGGGTGATGCCCTGAGG
AAGCCTCGCTTCCAGAAGCCCACCACATTGCACCTAGATGACCTCTTCTTCACCCTGTACCCCT
CCCTGGAGAAGTTTGAGGAGGAACTTGTGCAGCTGCTCATCAGCGACCACTTCCGGGAGGGGGT
TGGCCTGCTAGATAGCGGCACCCTAGAGGTCTTGGAGCGGCGCCTGCATGTCTGTGTCCACAAC
GGTCTGGGCTTCGTGCACAGGCCACAGGTGGTTGTGCTTGTACCTGAGATGGACATGACCTTGA
CGCGCTCGGCCAGCTTCAGCAGGAGAATCACTGCCTCTTCTAAGAGCAGCTCTGGAAATCAGGC
TCTGGTTTTGAGAAGCCACCTGAGACTCCCGGAGATGGTCAATCACCCATCGTTTGCCATCGTC
TTCCAGCTGGAGTACGTGTTCAACAGCCCCTCAGGAGCGGACGGCAGTGCCAGCTCATCCACCT
CTCTGTCCAGCTTGGCGTGCATGCACATGGTTCGATGGGCTGTTTGGAACCCCGATCTGGAAGC
AGGCCCGGGAAAGGTGACGCTGCCTCTTCAGGGTGGGGTACAGCACAACCCCTCACGATGTCTG
GTCTATAAGGTGCCTTCGGCTAGCATGAGCTCTGAGGAGGTGAAGCAGGTGGAATCCGGAACCA
TCCAGTTCCACTTCTCACTGAGCTCAGATGCCCTTACAGAGCATGCCAACGGCCCCAGGGCAGG
GCGGCGCTCCACCAGAAAGGCACTAACGTCCCCTTCAGGCACACCAGCACTGGCAGCCCGGGAT
CTTGCTGCGATACAGGACTCTCCTGTGGGCCCAGGGCTCTCGCTCTCCCAGCTGGCGGCCTCCC
CACAGTCTCTGGCCTCACAAAGATCTTTCAAGCCTCCTCCTCAGCCCCTGGATGGCTCTCAGTC
CCCAGAGGGTCCCCAGCTCCAAGCAGGATCTGTATTAGAGAGCAGGATCTCTCATCTGGAAGCT
GACCTGAGCCAGCCGCCCTTCTCGGTGCAGGGGACGCCCACTGTAGAACACCTACAGGAACTTC
CCTTCACTCCTTTGCATGCCCCCATTGTGGTGGGAGCCCAGACCAGGAGCTCCAGAAGCCAGCT
CTCCAGAGCTGCCATGGTCCTCCTGCAGTCTTCCGGCTTCCCTGAGATCCTTGATGCCAGGCAG
CAGCCGGTGGAGGCCGTCAATCCCATGGATCCTGTGAGGTTCAACCCTCAGAAGGAGGAGTCAG
ACTGCCTTCTAGGGAATGAGATCGTGCTGCAGTTTCTTGCCTTCAGCAGAGCGGCCCAGGACTG
CCCGGGAGCGCCGTGGCCACAGACTGTGTATTTCACCTTCCAGTTCTACCGTTTCCCACCCGAG
ACCACGCCACGCCTGCAGCTGGTCAAACTGGACAGGACAGGCAAGAACGGCTCTGCCTCCCTGT
CTCACATCCTGGTCCACATCAATAAAGACGGCTCCTTTGACGCTGAATTAATGATCGCGCTTCC
TCAGGAAGATGAAGGCAGAGGCCGCAGTCTGGCTACCATGTTAGTCAGCTCGATGGGCTCCCCT
GGCTTCCAGCTGAGGTACATGGTGGATCCCGGGTTCCTGAAGCCAGGAGAGCAGCGCTGGTTCG
CCCAGTACCTGGCCGCTCAGACGCTGCAAGTCGACGTCTGGGATGGAGACTCCTTGCTCCTCAT
TGGGTCTGCCGGCATCCAGATGAAGCACCTCCTCCGCCAAGGGCGGCCAGCTGTTCAGGTCTCA
CATGAACTGGAGGTCGTGGCCACTGAGTACGAACAGGAAATGATGGTGGTGAGCGGCGACGTGG
CGGGCTTCGGCAGCGTCAAGCCCATCGGAGTCCACACGGTCGTGAAGGGCCGGCTGCACCTGAC
CTTGGCCAACGTGGGTCACGAGTGTGAACCGAGAGCAAGAGGTTCCAACGCGCTGCCACCATCC
AGGTCCCGGGTCATCTCAAATAATGGAGCCAGCTTCTTCTCTGGGGGAAGCCTCCTCATACCAG
GAGGCCCCAAGCGAAAGCGTGTGGTTCAAGCCCAGAAGCTGGCTGATGTGGACAGTGAGCTGGC
CGCCATGCTGCTGACCCACACTCGAGCTGGCCAGGGGCCCCAGGCTGTGGGCCAGGAGGCAGAC
GCTGTGCACAGGCGCAAGCTGGAAAGGATGCGGCTGGTGCGCCTGCAGGAGGCCGGAGGGGACT
CTGACAGTCGCAGGATCAGCGTGCTGGCCCGACACAGTGTCCGTGCACAGCACTCACGGGACCT
GCAGGTCATCGACGCCTACCGGGAACGGACCAAGGCTGAGAACATTGCCAGCGTGTTGAGCCAG
GCCATCACCACACACCACACACTGTATGCCACGCTGGGCACGGCTGAGTTCTTCGAGTTTGCAC
TTAAAAACCCACACAACACTCAGCACACGGTGGCCATCGAGATTGACAGCCCTGAGCTCAGCAT
CATCCTGGACAGCCAGGAGTGGAGGTACTTCAAGGAGGCCACTGGCCTGCTCACACCCCTGGAG
GAGGACATGTTCCACCTGCGTGGGAGCCTGGCACCCCAGCTCTACCTGCGGCCCCGGGAGACTG
CCCACATCCCCTTCAAGTTCCAGAACTTCTCTGTGGGCCCACCTGCTCCGACACAGGCCCCTGC
GGAGGTGATCTCAGAGAAGGATGCAGAGTCTGGACCCCATTGGAAGTGCAGTGCCATGCCTACC
AAACACGCCAAGGTCCTTTTCCGGGTGGAGACCGGCCAGCTCATTGCTGTGCTCTGCCTGACCG
TGGAGCCCCAGCCCCACGTGGTGGACCAGGTTTTCCGTTTCTACCACCCAGAACTCACCTTCCT
GAAGAAGGCCATCCGCCTGCCGCCCTGGCACACGCTTCCAGGTGCTCCCGTGGGGATGCCTGGC
GAGGACCCCCCAGTCCACGTTCGATGCAGCGACCCGAATGTCATCTGCGAGGCCCAGAACGTGG
GCCTTGGTGAGCCGAGGGACGTGTTCCTTAAGGTGGCCAGCGGTCCAAGCCCGGAGATCAAAGA
CTTCTTTGTCGTCATCTATGCGGATCGCTGGCTGGCGGTGCCCGTGCAGACATGGCAGGTCTGC
CTCCACTCCCTGCAGCGCGTGGATGTCTCCTGTGTCGCAGGGCAGATGACCCGTCTGTCCCTCG
TCCTACGGGGGACGCAGACCGTTAGGAAAGTGAGAGCTTTCACCTCCCACCCTCAGGAGCTGAA
GACAGACCCCGCTGGTGTCTTTGTGTTACCACCTCACGGGGTGCAGGACCTGCATGTGGGCGTG
AGGCCAAGGAGGGCGGGCAGCCGCTTCATCCATCTCAACCTGGTGGACGTCGACTACCACCAGC
TGGTCGCGTCGTGGCTCGTGTGCCTGTCCTGCCGCCAGCCCCTCATTTCCAAGGCCTTCGAGAT
CACCATGGCAGCAGGCGAAGGGAAGGGTGCCAACAAGCGGATCACCTACACCAACCCCTACCCT
TCTCGGAGGACCTACCGTCTGCACAGTGACCGGCCAGACCTGCTGCATTTCAAGGAGGACTCCT
TCCAGGTGGCCGGAGGGGAGACCTACACCATCGGGCTGCGGTTCTTGCCGAGTGGCAGCGCCGG
GCAGGAGGAGATCCTGATCTACATCAATGACCAGGACGACAAGAATGAAGAGACATTCTGTGTG
AAGGTCCTCTACCAGTGAGGGGATGGCTGTGAGGCCAGCGCCCCTTCCAGAGTGCCCCTCCCTG
CAGACATCACTGTGACTCCAGGACTGGTCTGCGTAGCCCATGGAGCTGACTGAGTGCAGGGAGA
CAAAGGCTACCCTCGCCATGGTGTAGCATAATCCCATGAGCGAATGTGACCTCCGGGGTCACGG
CAGTGGCTCACTCTGCCTATGGCACTCACAAGGTTGTGTCACACCCCATGACTCTCAGGCTGTC
ACCGTCTAGAACAAACTGTTTTATAAATCATTTCCAATGACAAAATTATGTTTTTCTTTCTAGA
TTTTTAAAAAATGAACACAATATATTTTCATTTGCTATGTATTTTATACTGGAATTCCCTTGTA
TATATATTTTTTAAGTTATTGAATGAAGCACCTCACTTCGGCTGTT

hide sequence

RefSeq Acc Id:

XM_039110104 ⟹ XP_038966032

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	168,270,914 - 168,356,391 (+)	NCBI
mRatBN7.2	5	162,988,206 - 163,073,708 (+)	NCBI

RefSeq Acc Id:

XM_039110105 ⟹ XP_038966033

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	168,270,522 - 168,356,391 (+)	NCBI
mRatBN7.2	5	162,988,008 - 163,073,697 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032739	(Get FASTA)	NCBI Sequence Viewer
	NP_001423824	(Get FASTA)	NCBI Sequence Viewer
	NP_001423825	(Get FASTA)	NCBI Sequence Viewer
	XP_006239527	(Get FASTA)	NCBI Sequence Viewer
	XP_017448924	(Get FASTA)	NCBI Sequence Viewer
	XP_038966032	(Get FASTA)	NCBI Sequence Viewer
	XP_038966033	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI07906	(Get FASTA)	NCBI Sequence Viewer
	EDL81239	(Get FASTA)	NCBI Sequence Viewer
	EDL81242	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063188
	ENSRNOP00000063188.2

RefSeq Acc Id:

NP_001032739 ⟸ NM_001037650

- UniProtKB:

G3V9Y6 (UniProtKB/TrEMBL), A6IUI8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDDWHRAFTQNTLVPPHPQRARQFGKESTAFQCILKWLDGPLIKQGILDMLSELECHLRVSLFD
VTYKHFFGRTWKTTVKPTNQLSKQPPRILFNEPLYFHTTLSHPSIVAVIEVVAEGRKRDGALQV
LSCGFGILRIFGNKPESPTSAGQDKRLRLYHGTPRALLHPLLQDPIEQNRYMTMMENCSLQYTL
KPHPPLEPAFHLLPENFLISGLQQIPGLLPPHGDTGDALRKPRFQKPTTLHLDDLFFTLYPSLE
KFEEELVQLLISDHFREGVGLLDSGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDMTLTRS
ASFSRRITASSKSSSGNQALVLRSHLRLPEMVNHPSFAIVFQLEYVFNSPSGADGSASSSTSLS
SLACMHMVRWAVWNPDLEAGPGKVTLPLQGGVQHNPSRCLVYKVPSASMSSEEVKQVESGTIQF
HFSLSSDALTEHANGPRAGRRSTRKALTSPSGTPALAARDLAAIQDSPVGPGLSLSQLAASPQS
LASQRSFKPPPQPLDGSQSPEGPQLQAGSVLESRISHLEADLSQPPFSVQGTPTVEHLQELPFT
PLHAPIVVGAQTRSSRSQLSRAAMVLLQSSGFPEILDARQQPVEAVNPMDPVRFNPQKEESDCL
LGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDRTGKNGSASLSHI
LVHINKDGSFDAGSPGFQLRYMVDPGFLKPGEQRWFAQYLAAQTLQVDVWDGDSLLLIGSAGIQ
MKHLLRQGRPAVQVSHELEVVATEYEQEMMVVSGDVAGFGSVKPIGVHTVVKGRLHLTLANVGH
ECEPRARGSNALPPSRSRVISNNGASFFSGGSLLIPGGPKRKRVVQAQKLADVDSELAAMLLTH
TRAGQGPQAVGQEADAVHRRKLERMRLVRLQEAGGDSDSRRISVLARHSVRAQHSRDLQVIDAY
RERTKAENIASVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQE
WRYFKEATGLLTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKFQNFSVGPPAPTQAPAEVISEK
DAESGPHWKCSAMPTKHAKVLFRVETGQLIAVLCLTVEPQPHVVDQVFRFYHPELTFLKKAIRL
PPWHTLPGAPVGMPGEDPPVHVRCSDPNVICEAQNVGLGEPRDVFLKVASGPSPEIKDFFVVIY
ADRWLAVPVQTWQVCLHSLQRVDVSCVAGQMTRLSLVLRGTQTVRKVRAFTSHPQELKTDPAGV
FVLPPHGVQDLHVGVRPRRAGSRFIHLNLVDVDYHQLVASWLVCLSCRQPLISKAFEITMAAGE
GKGANKRITYTNPYPSRRTYRLHSDRPDLLHFKEDSFQVAGGETYTIGLRFLPSGSAGQEEILI
YINDQDDKNEETFCVKVLYQ

hide sequence

RefSeq Acc Id:

XP_006239527 ⟸ XM_006239465

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDDWHRAFTQNTLVPPHPQRARQFGKESTAFQCILKWLDGPLIKQGILDMLSELECHLRVSLFD
VTYKHFFGRTWKTTVKPTNQLSKQPPRILFNEPLYFHTTLSHPSIVAVIEVVAEGRKRDGALQV
LSCGFGILRIFGNKPESPTSAGQDKRLRLYHGTPRALLHPLLQDPIEQNRYMTMMENCSLQYTL
KPHPPLEPAFHLLPENFLISGLQQIPGLLPPHGDTGDALRKPRFQKPTTLHLDDLFFTLYPSLE
KFEEELVQLLISDHFREGVGLLDSGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDMTLTRS
ASFSRRITASSKSSSGNQALVLRSHLRLPEMVNHPSFAIVFQLEYVFNSPSGADGSASSSTSLS
SLACMHMVRWAVWNPDLEAGPGKVTLPLQGGVQHNPSRCLVYKVPSASMSSEEVKQVESGTIQF
HFSLSSDALTEHANGPRAGRRSTRKALTSPSGTPALAARDLAAIQDSPVGPGLSLSQLAASPQS
LASQRSFKPPPQPLDGSQSPEGPQLQAGSVLESRISHLEADLSQPPFSVQGTPTVEHLQELPFT
PLHAPIVVGAQTRSSRSQLSRAAMVLLQSSGFPEILDARQQPVEAVNPMDPVRFNPQKEESDCL
LGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDRTGKNGSASLSHI
LVHINKDGSFDAELMIALPQEDEGRGRSLATMLVSSMGSPGFQLRYMVDPGFLKPGEQRWFAQY
LAAQTLQVDVWDGDSLLLIGSAGIQMKHLLRQGRPAVQVSHELEVVATEYEQEMMVVSGDVAGF
GSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSNALPPSRSRVISNNGASFFSGGSLLIPGGP
KRKRVVQAQKLADVDSELAAMLLTHTRAGQGPQAVGQEADAVHRRKLERMRLVRLQEAGGDSDS
RRISVLARHSVRAQHSRDLQVIDAYRERTKAENIASVLSQAITTHHTLYATLGTAEFFEFALKN
PHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLLTPLEEDMFHLRGSLAPQLYLRPRETAHI
PFKFQNFSVGPPAPTQAPAEVISEKDAESGPHWKCSAMPTKHAKVLFRVETGQLIAVLCLTVEP
QPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGMPGEDPPVHVRCSDPNVICEAQNVGLG
EPRDVFLKVASGPSPEIKDFFVVIYADRWLAVPVQTWQVCLHSLQRVDVSCVAGQMTRLSLVLR
GTQTVRKVRAFTSHPQELKTDPAGVFVLPPHGVQDLHVGVRPRRAGSRFIHLNLVDVDYHQLVA
SWLVCLSCRQPLISKAFEITMAAGEGKGANKRITYTNPYPSRRTYRLHSDRPDLLHFKEDSFQV
AGGETYTIGLRFLPSGSAGQEEILIYINDQDDKNEETFCVKVLYQ

hide sequence

RefSeq Acc Id:

XP_017448924 ⟸ XM_017593435

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDDWHRAFTQNTLVPPHPQRARQFGKESTAFQCILKWLDGPLIKQGILDMLSELECHLRVSLFD
VTYKHFFGRTWKTTVKPTNQLSKQPPRILFNEPLYFHTTLSHPSIVAVIEVVAEGRKRDGALQV
LSCGFGILRIFGNKPESPTSAGQDKRLRLYHGTPRALLHPLLQDPIEQNRYMTMMENCSLQYTL
KPHPPLEPAFHLLPENFLISGLQQIPGLLPPHGDTGDALRKPRFQKPTTLHLDDLFFTLYPSLE
KFEEELVQLLISDHFREGVGLLDSGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDMTLTRS
ASFSRRITASSKSSSGNQALVLRSHLRLPEMVNHPSFAIVFQLEYVFNSPSGADGSASSSTSLS
SLACMHMVRWAVWNPDLEAGPGKVTLPLQGGVQHNPSRCLVYKVPSASMSSEEVKQVESGTIQF
HFSLSSDALTEHANGPRAGRRSTRKALTSPSGTPALAARDLAAIQDSPVGPGLSLSQLAASPQS
LASQRSFKPPPQPLDGSQSPEGPQLQAGSVLESRISHLEADLSQPPFSVQGTPTVEHLQELPFT
PLHAPIVVGAQTRSSRSQLSRAAMVLLQSSGFPEILDARQQPVEAVNPMDPVRFNPQKEESDCL
LGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDRTGKNGSASLSHI
LVHINKDGSFDAELMIALPQEDEGRGRSLATMLVSSMGSPGFQLRYMVDPGFLKPGEQRWFAQY
LAAQTLQVDVWDGDSLLLIGSAGIQMKHLLRQGRPAVQVSHELEVVATEYEQEMMVVSGDVAGF
GSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSNALPPSRSRVISNNGASFFSGGSLLIPGGP
KRKRVVQAQKLADVDSELAAMLLTHTRAGQGPQAVGQEADAVHRRKLERMRLVRLQEAGGDSDS
RRISVLARHSVRAQHSRDLQVIDAYRERTKAENIASVLSQAITTHHTLYATLGTAEFFEFALKN
PHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLLTPLEEDMFHLRGSLAPQLYLRPRETAHI
PFKFQNFSVGPPAPTQAPAEVISEKDAESGPHWKCSAMPTKHAKVLFRVETGQLIAVLCLTVEP
QPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGMPGEDPPVHVRCSDPNVICEAQNVGLG
EPRDVFLKVASGPSPEIKDFFVVIYADRWLAVPVQTWQVCLHSLQRVDVSCVAGQMTRLSLVLR
GTQTVRKVRAFTSHPQELKTDPAGVFVLPPHGVQDLHVGVRPRRAGSRFIHLNLVDVDYHQLVA
SWLVCLSCRQPLISKAFEITMAAGEGKGANKRITYTNPYPSRRTYRLHSDRPDLLHFKEDSFQV
AGGETYTIGLRFLPSGSAGQEEILIYINDQDDKNEETFCVKVLYQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000063188 ⟸ ENSRNOT00000066623

RefSeq Acc Id:	XP_038966033 ⟸ XM_039110105
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038966032 ⟸ XM_039110104
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V9Y6-F1-model_v2	AlphaFold	G3V9Y6	1-1428	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560172	AgrOrtholog
BioCyc Gene	G2FUF-39002	BioCyc
Ensembl Genes	ENSRNOG00000011967	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066623	ENTREZGENE
	ENSRNOT00000066623.3	UniProtKB/TrEMBL
InterPro	NPHP4	UniProtKB/TrEMBL
KEGG Report	rno:313749	UniProtKB/TrEMBL
NCBI Gene	313749	ENTREZGENE
PANTHER	NEPHROCYSTIN-4	UniProtKB/TrEMBL
	PTHR31043	UniProtKB/TrEMBL
PhenoGen	Nphp4	PhenoGen
RatGTEx	ENSRNOG00000011967	RatGTEx
UniProt	A6IUI8	ENTREZGENE, UniProtKB/TrEMBL
	G3V9Y6	ENTREZGENE, UniProtKB/TrEMBL
	Q32Q04_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-29	Nphp4	nephrocystin 4	Nphp4	nephronophthisis 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-01-22	Nphp4	nephronophthisis 4	Nphp4	nephronophthisis 4 (juvenile) homolog (human)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-27	Nphp4	nephronophthisis 4 (juvenile) homolog (human)	Nphp4	nephronophthisis 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Nphp4	nephronophthisis 4	LOC313749	similar to mKIAA0673 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC313749	similar to mKIAA0673 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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