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Gene: Vgll3 (vestigial-like family member 3) Rattus norvegicus

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Symbol:

Vgll3

Name:

vestigial-like family member 3

RGD ID:

1560030

Description:

Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human VGLL3 (vestigial like family member 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC498038; RGD1560030; similar to colon carcinoma related protein; transcription cofactor vestigial-like protein 3; vestigial like 3; vestigial like 3 (Drosophila)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VGLL3 (vestigial like family member 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Vgll3 (vestigial like family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vgll3 (vestigial like family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VGLL3 (vestigial like family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	VGLL3 (vestigial like family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Vgll3 (vestigial like family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	VGLL3 (vestigial like family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VGLL3 (vestigial like family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vgll3 (vestigial like family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Vgll3 (vestigial like family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	VGLL3 (vestigial like family member 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Vgll3 (vestigial like family member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Vgll3 (vestigial like family member 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	vgll3 (vestigial-like family member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	vg	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	vgll3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	vgll3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	17,089,484 - 17,136,501 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	17,089,597 - 17,138,937 (+)	Ensembl				GRCr8
mRatBN7.2	11	3,642,993 - 3,692,590 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	3,643,069 - 3,689,140 (+)	Ensembl				mRatBN7.2
Rnor_6.0	11	3,119,509 - 3,168,883 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	3,119,885 - 3,164,751 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	3,097,556 - 3,146,588 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	3,348,763 - 3,394,087 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	3,617,060 - 3,666,333 (+)	NCBI		Celera
Cytogenetic Map	11	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chloroprene (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dimethylarsinous acid (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

enniatin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

fenamidone (ISO)

folic acid (ISO)

fulvestrant (ISO)

genistein (ISO)

indometacin (ISO)

isoprenaline (ISO)

ketoconazole (ISO)

lead diacetate (EXP)

lead(0) (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

nitrofen (EXP)

panobinostat (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (ISO)

phenylmercury acetate (ISO)

rac-lactic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17689488	PMID:32814879

Genomics

Comparative Map Data

Vgll3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	17,089,484 - 17,136,501 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	17,089,597 - 17,138,937 (+)	Ensembl				GRCr8
mRatBN7.2	11	3,642,993 - 3,692,590 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	3,643,069 - 3,689,140 (+)	Ensembl				mRatBN7.2
Rnor_6.0	11	3,119,509 - 3,168,883 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	3,119,885 - 3,164,751 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	3,097,556 - 3,146,588 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	3,348,763 - 3,394,087 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	3,617,060 - 3,666,333 (+)	NCBI		Celera
Cytogenetic Map	11	p12	NCBI

VGLL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	86,937,973 - 86,991,149 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	86,876,388 - 86,991,149 (-)	Ensembl			hg38	GRCh38
GRCh37	3	86,987,123 - 87,040,299 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	87,069,813 - 87,122,947 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	87,739,047 - 87,793,404 (-)	NCBI		Celera
Cytogenetic Map	3	p12.1	NCBI
HuRef	3	87,000,438 - 87,053,543 (-)	NCBI		HuRef
CHM1_1	3	86,939,749 - 86,992,814 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	87,012,305 - 87,065,510 (-)	NCBI		T2T-CHM13v2.0

Vgll3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	65,612,075 - 65,663,254 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	65,612,143 - 65,663,254 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	65,815,189 - 65,866,368 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	65,815,257 - 65,866,368 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	65,815,878 - 65,863,311 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	65,733,678 - 65,781,326 (+)	NCBI		MGSCv36	mm8
MGSCv36	16	66,265,561 - 66,314,128 (+)	NCBI		MGSCv36	mm8
Celera	16	66,081,364 - 66,128,723 (+)	NCBI		Celera
Cytogenetic Map	16	C1.3	NCBI
cM Map	16	37.34	NCBI

Vgll3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	6,258,251 - 6,287,397 (+)	Ensembl
ChiLan1.0	NW_004955407	6,247,557 - 6,293,133 (+)	NCBI	ChiLan1.0	ChiLan1.0

VGLL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	87,005,764 - 87,133,600 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	87,087,730 - 87,138,166 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	87,066,497 - 87,119,625 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	89,183,186 - 89,233,290 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	89,165,559 - 89,233,239 (-)	Ensembl			panPan2	panpan1.1

VGLL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	1,037,001 - 1,151,812 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	1,036,652 - 1,143,670 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	1,078,747 - 1,196,263 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	1,020,681 - 1,138,576 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	1,020,693 - 1,066,261 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	999,127 - 1,046,551 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	1,047,879 - 1,095,314 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	1,350,874 - 1,468,572 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Vgll3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	2,528,231 - 2,583,681 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936610	2,528,670 - 2,577,951 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936610	2,528,420 - 2,579,156 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VGLL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	168,790,207 - 168,836,927 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	168,790,024 - 168,839,962 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	179,675,642 - 179,725,107 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VGLL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	89,927,526 - 89,972,790 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	89,928,227 - 89,973,245 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	76,754,073 - 76,804,505 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vgll3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624789	3,232,287 - 3,271,600 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624789	3,226,581 - 3,271,940 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Vgll3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	77,084,693 - 77,128,902 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Vgll3
472 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	88
Count of miRNA genes:	82
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000042316
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	3818154	48818154	Rat
1600394	Edcs1	Endometrial carcinoma susceptibility QTL1	2.9	0.04	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	11	12823152	57823152	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	10806125	55806125	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	135	81	80	49	30	49	6	281	130	11	114	78	92	31	9	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001427794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000042316 ⟹ ENSRNOP00000051348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	17,089,597 - 17,138,937 (+)	Ensembl
mRatBN7.2 Ensembl	11	3,643,069 - 3,689,140 (+)	Ensembl
Rnor_6.0 Ensembl	11	3,119,885 - 3,164,751 (+)	Ensembl

RefSeq Acc Id:

NM_001427793 ⟹ NP_001414722

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	17,089,592 - 17,136,501 (+)	NCBI

RefSeq Acc Id:

NM_001427794 ⟹ NP_001414723

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	17,090,244 - 17,136,501 (+)	NCBI

RefSeq Acc Id:

XM_006247981 ⟹ XP_006248043

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	17,089,484 - 17,134,795 (+)	NCBI
mRatBN7.2	11	3,642,993 - 3,692,590 (+)	NCBI
Rnor_6.0	11	3,119,509 - 3,168,883 (+)	NCBI
Rnor_5.0	11	3,097,556 - 3,146,588 (+)	NCBI

Sequence:

show sequence

TCGCTTGGCTCCCGGGGTGACTCTAGCGGGGATCCTGCTGCAGCGGCAGCTAGCGCTGGGGAGT
ACGCTCCTGTCTCTGATGCCACCGCCTGAGCCTGAGCACAGCGCTGTCATGCTCCTGCCGCGGG
GCGGGCTACAGCGTCGTCCCGTCGCTATATAAGCGCGAGCAGAGGGGGCACTCGGAGGGGTTGA
AAATGAAGGTGCCCGCGCATGGGCCGCCGCTGATTGCCAACCCCTCCCGAGCTCGCTCCCGGCG
CACAGCCCGAGGCCGCCGAGGATCCGCCTTAGCCGCAGTAGCAGCTGGTTCAGCGACGCGGACG
GCAGCTGCGGCGGCGGCGGTGGCGGTGGCTCCCCTCGCGCCAGCGCGTAGAGCAGCGGCGGCGA
CTCCGGGGCCGCCGCTGGCCCCGCTGCCATGAGTTGTGCGGAGGTGATGTATCACCCCCAGCCG
TATGGAGCGCCCCAGTATCTGCCCAACCCTGTGGCAGCTGCAACCTGCCCTACAGCCTGCTATC
ATCCGGCGCCCCAACCTGGCCAGCAGAAGTTAGCGGTATACAGCAAGATGCAGGACTCTCTGGA
AGTCACCCTTCCCAGCAAACAAGAGGAGGAGGAGGAGGAGGAGGATGAGGATGAGGAGGAGGAG
AAAGACCAGCCTGCCGAGATGGAGTACCTTAACTCTCGCTGTGTCCTTTTCACTTATTTCCAGG
GAGACATTGGGTCAGTAGTGGATGAACACTTCTCAAGAGCTTTGGGCCAAGCCAACACCTTGCA
TCCCGAATCTGCCATTTCAAAAAGCAAGATGGGGCTAACCCCCCTATGGCGAGACAGCTCAGCT
CTTTCAAGCCAGCGGAGTAATTTTCCAACTTCCTTTTGGACCAGCTCTTACCAGCCCCCACCGG
CACCTTGTTTGGGGGGAGTTCATCCTGACTTCCAAGTCACTGCACCCCACGGCACCTTTACAAC
AGCAGACCCCAACTCTTGGCCAGGACATGGTCTGCATCAGACTGGCCCTGCCCCACCCCCTACT
GCATCTGAGTCTTGGCACTATCCTCTGGCATCTCAGGTGAGCCCATCCTACAGCCACATGCATG
ACATGTACATGCGGCATCACCATCCTCATGCTCACATGCACCACCGCCACCACCACCATCACCA
CCACCCAACTGCTGGCTCTGCCCTGGATCCCGCGTATGGGCACCTGCTGATGCCATCAGTGCGT
GCTGCCAGGATTCCTGCTCCCCAGTGTGACATCACAAAGACAGATCTGACTACAGCCACCACTG
CTACCTCAGCATGGGCCGGAGCCTTTCATGGGACAGTGGACATCGTGCCAAGTGTGGGCTTCGA
AACAGGTCTTCAGCATCAGGACAAGAGCAAAGAGTCAACTTGGTACTGAAGCATGGTGTCAGCA
GGTCATACGGCAGCGTGAATCCAAGGACCCTCTGGGAAAACATGCCGTTGGGGTATCCCATGCA
GGAATGGGACATGGGAAACATGGACTGAGAAGAGGACAGGGAAGGCCATTGTCTTTAGATTTGA
ACCGTTTCTGGATAAAGCATAGTGGGTCCTCCTACTCTTTGAAGAAAAGCTTTTGGTTTGTTCT
CCGTCATCTGAGCCTTTGTCACCTGTGCGACGTCTCATTTTACTCACCTTGTACGAGGACCTGG
GCTAGATTTTTGTGCTTTGTCTTTTTCTTCTTTTTTTTCTTTTTGTTTTTTTCCTTTTGAACCA
GCCACCTTATAAGAAGATGATTTACCATATGAAAATGCTCATTCCTTCAGGAAAACTAATATCT
CTATCTTCATCTATTTTTGTGGAAATACAAAATGGTTGGTTTAACATAGAGGGGATATTTTTGA
AGATGTAATTGTTTTTTGTTTTGTTTTGTTTTGTTTTACTTAATCTTGTAGCAATCGTTGAGTT
CTGTTTAAAGAACTTGCTCTCAGAAAAGCACTGGCTAAAATGTTTAAGTGCTGATCTTTAAAAT
GTTTGTAATGCGCTTTGTCTGTGCTTCCGAGGGTACCTCAAGGTTTCGTCCTTTCTACAACAGT
GGCACGACCATAAACAGACCTTGCAATGTTGTGTTTATGTTGAAACTCAGTGAAGACTTAATTC
GATGATAGCTCTCTTAGTTTGCAATTATATATGTATGTGCAGCTTGAAAGGGGCATTTTCTTTT
AAAGAGCCACAAAGTAAAGGGTATTTCTCCAAAATAGTTCTTGGAAGTGACTAACAATTAAATT
TAGGTTAATGAGCAATACTTCTCTGTGTAGTCCAGCCTATCTTAACAATTAGGAATAGAGCTTA
CATACAGCTTCAAAATAGGAAAAAGCAACACACTTAGCGATGATAACTGTGGATCTCACTGACA
AATTTTCCTAACTTCTAACCATTCATTCATGGCTGTTTCAAAGGTCATAATTTGGATGACTTTT
GTTTTCTGGAGTATCAGCACATGCCAAAGTGCTGACTATCCCCCATTTCTGTAAACTGAAAAGT
AATGTATTCTGGATGTAATGTTTTAATTTGATCATTCTGCAAGATTTTTCATTTGCTTTTAAGT
GTAATTAGTTTCTCAAAAATTAGAGCAAAATAAAAGTGGTAATGGATTTAAGTTTATGCTTCAA
TTACACAAACTGGTTGAAAGACTGAAAACTTGAGCAGTAAACTTCCCATGGCCCAGAAGATAAA
GGAGTGAAGTTTGAAGTCACTTGAAGATTCAAGAGAAGATTAGGCAAAGGTTAGGACTATGAAG
GTAGCAATGGCTGGCAAATCAAAGAAGCAGCATATTTTTTTTTTCCTTTCAGTTGCTCCCAGCC
ATAGAGGATGTTAGTGTAGTACAGATGCTTTTATTTGATAATGTTTCTCAAATTCTCCCATTTC
TCTCAGCCCACACAAAACAGAAGGTTAAGTCACGTGCTACATTCTGGTTTTAATTGTGAACTTC
ATGGGTGAGAATACTTTGCACATTAGCAACACTACAAGCAGCTAGGCAGAATTCTCCCAACTCA
TTTCCAAACATTTCACTTGGCTATATCGATAGATATTTGTTTCTCTCCCTGCTGTGTTTTGAAT
TATAAACCCAGTTCATCTCGTGTATCCACTTGTATCTTGACTCCATCATTTCTTCATCTTGATT
TTCCTTTAACACAGTCTTCACATTTTTATCAGTAGAGTCTAGACTTAAGGTAGCTTACCAGTTT
AGGAACTTTAGCATCCTGATAATGGTCTCATTTAATTCTATGCATTTTTATCTGGATGTTGATA
ACAAATAAAAATTGCATCTGCATAAACATGTGGAGCGTAGAGTTGAGTGAATCTATCAAGTCAT
GTTGTCTTGAATCCTTGAATCCAGTGGTAAGAACTGAACACTCAGCAGTTCCCGTGAGGGAGCC
TTATTGGTTGGTATCACATTTCCCCTTGGGATATATTAACTTACATCGCAGTGTCTCCTAAAAC
ACTACCACACTTGAAGTCACTGAGCTCACTTCATTGAATTTAATCAGATAAGGGAAGATAAGAG
GACTAACTTGTTTTCTTCTTCATTATCATTCTGGATTGTAAAAGAAAGTAGATAATGTAGTGGT
TTTTGCTCTGATATCCTCATAACTATGCCCAAAACATGATTTGGTTCAAGACCAAAGGAAAGGG
AAGAATCTAAATTCTATGGCGTGCAACAAAGGCGTGAGCTCGCCCTATGAGAACAGGCATAGGT
AACAGTGGCCCACTGTCATCAAAGGAGGGGACCAGAATCTAATAAAGGAGAAAGAACATGTTTC
TCTAACTATCCAGCATCCCTCAGTGTTTTAACATTACTGTTACAAGGAGAAGTAATAAAGGGAG
CTATACTATAGCAAAATAAGTAATCTGAATTTATTTGCATATCAAGTGCTATTACACCCTGGTC
TGGATTCTCACTTTAAAGTATGACTGCTATACAGAAGGGTCACTGCCTCCTGACTCTCTGAATT
CATTAGACCCACTCTACTTTTGACTGTTTTACAACTTAAATTTCCTTCTATTTGAAAGCCTGCA
CATTTGACACCAGAAGACCTTATTATTCTATATGCCATCTACTATTCCACAAATGAACTCTCTA
CAGCAAGGAACCACACATTGTTGGCTGTTAGAATCCCCGCAGGATATCTGATTTTTCCTTGATA
ATTTCTGAAGAACCTCTGACATTTATACTCTAAACATTTTTCTAAACCAAGTTGATATATTATC
TTTTACCCATTCTTTTAACTCTTCCAACTTTTCTTTGTTGAATTCATTATTGAGATTTTCATTA
TGTTCACTCCCCAAAACAGAAATATTATCCTAAAATTTATAGAGAGAATGAGAGTATTCCAAAA
ATACTGAAGAACACATTTCCCAAAGTTGTAACATTAAAATAATATGTTCTAGAGGAGCTCACCA
TTATTTTACAAATAGTATTTGCCTGTTCCCAAGCTTGTAGAACATGGGACAGGAAGAAGCCTTA
AGACCACTATCTGACTGGATGCTGTGGTTGTAATTTCAACTGACAGAGACTGCACTTTTCTAAA
TTGCATGCTGTCCCTTATGAGAAGCATCCCTGTGTGAAGTAGCATTTGCCTAACTAGTCAGTGG
GAATGGCAGTAAGTGATGGACCAGGACACACTGTTTTGACTGAGGAGTGGGTCAGCAGGATGAT
TGAGTGTGAACTCAGTGTTTCACTGAATTCTGACCAAGCTGTGGTTTATTGTTGCAGAACTTCA
TTTACCTCATGATAAAAACATGGGTTAATACTACCTAATAGGATGGCTGTGAAAGTTGGGAAAC
ATACAGATGTACCTGACTTACAGCATAGATGTTCAAACAAGTAGCAGCTTTCTCAAACAACCAT
CAATTCAGCAAGTTGGTTACTAAATTGAGCTCTTAACTCTTCTTTCCCTTAATATTGCATAATC
ATTATTCTGCACCTAAATAGACCAATGACTACTTTTCTGTAGAGTCATTGAAAAGGGAATCTTT
GTTCCCTCTTACTTATGGGAGATAAAATGTTAACTTCCTAATGAACTCTGAGTTTTTAATGTGG
TGTTTCTGAAGAAAAGCTAATTAAACATTTAGTTGTATGTAGCCAGAGTCTGAGTCATTTTCAC
ACACAACTCCATATATTGCTGTCTCCAAAATTAGGAGGGCAGTGTCACCAAGCCACAGACCTTT
GTAGTTGTCAGATATACATTGTGTTTCTGTGGCATTGGACTAAGAATGTTCTCTTCTCTGCCCC
CCTTGTTTTTCCTTCCCTTGGAGGAAAAGTTGCACAATATGGTGTGGAAAAAAAAAGTCTCCTT
CATGGAAAGGGAGGGAAACACTCCCTTTACAATCTCAGTCAGCAGATTCACTCTACTGGAGAAA
AAAAAAGGAAACAATTTTATTGGAAGCAGATGTTGACACTGCGTCGTTACTGAAGATAGAAAGA
GTTCACTGAGTCGTTGCAGTTACAAAGGGGTATTGATGGCACTCAAGGTCCCTGTGGTGGGCCA
CCTTCCCAGCTGTGGGAGGACAGCAGAAGCTGTTTGCAACCCAAAATGAAGTCAGCCTGTGATT
TCAATGTGCAAGAAACACCAAGGACTAAACTTGTTTGTTTGGTGTAATTTTTTCCCCTGCAGAA
TGCATAATATTTATCTTTCATATATATTAAGGCTGGAAAGAAGAAACTGGGAAAGGGAATAACA
CTCGAAATGTATATAAGAAATACTCAA

hide sequence

RefSeq Acc Id:

XM_006247982 ⟹ XP_006248044

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	17,089,487 - 17,134,795 (+)	NCBI
mRatBN7.2	11	3,642,998 - 3,692,590 (+)	NCBI
Rnor_6.0	11	3,119,511 - 3,168,883 (+)	NCBI
Rnor_5.0	11	3,097,556 - 3,146,588 (+)	NCBI

Sequence:

show sequence

GCTTGGCTCCCGGGGTGACTCTAGCGGGGATCCTGCTGCAGCGGCAGCTAGCGCTGGGGAGTAC
GCTCCTGTCTCTGATGCCACCGCCTGAGCCTGAGCACAGCGCTGTCATGCTCCTGCCGCGGGGC
GGGCTACAGCGTCGTCCCGTCGCTATATAAGCGCGAGCAGAGGGGGCACTCGGAGGGGTTGAAA
ATGAAGGTGCCCGCGCATGGGCCGCCGCTGATTGCCAACCCCTCCCGAGCTCGCTCCCGGCGCA
CAGCCCGAGGCCGCCGAGGATCCGCCTTAGCCGCAGTAGCAGCTGGTTCAGCGACGCGGACGGC
AGCTGCGGCGGCGGCGGTGGCGGTGGCTCCCCTCGCGCCAGCGCGTAGAGCAGCGGCGGCGACT
CCGGGGCCGCCGCTGGCCCCGCTGCCATGAGTTGTGCGGAGGTGATGTATCACCCCCAGCCGTA
TGGAGCGCCCCAGTATCTGCCCAACCCTGTGGCAGCTGCAACCTGCCCTACAGCCTGCTATCAT
CCGGCGCCCCAACCTGGCCAGCAGGGAGACATTGGGTCAGTAGTGGATGAACACTTCTCAAGAG
CTTTGGGCCAAGCCAACACCTTGCATCCCGAATCTGCCATTTCAAAAAGCAAGATGGGGCTAAC
CCCCCTATGGCGAGACAGCTCAGCTCTTTCAAGCCAGCGGAGTAATTTTCCAACTTCCTTTTGG
ACCAGCTCTTACCAGCCCCCACCGGCACCTTGTTTGGGGGGAGTTCATCCTGACTTCCAAGTCA
CTGCACCCCACGGCACCTTTACAACAGCAGACCCCAACTCTTGGCCAGGACATGGTCTGCATCA
GACTGGCCCTGCCCCACCCCCTACTGCATCTGAGTCTTGGCACTATCCTCTGGCATCTCAGGTG
AGCCCATCCTACAGCCACATGCATGACATGTACATGCGGCATCACCATCCTCATGCTCACATGC
ACCACCGCCACCACCACCATCACCACCACCCAACTGCTGGCTCTGCCCTGGATCCCGCGTATGG
GCACCTGCTGATGCCATCAGTGCGTGCTGCCAGGATTCCTGCTCCCCAGTGTGACATCACAAAG
ACAGATCTGACTACAGCCACCACTGCTACCTCAGCATGGGCCGGAGCCTTTCATGGGACAGTGG
ACATCGTGCCAAGTGTGGGCTTCGAAACAGGTCTTCAGCATCAGGACAAGAGCAAAGAGTCAAC
TTGGTACTGAAGCATGGTGTCAGCAGGTCATACGGCAGCGTGAATCCAAGGACCCTCTGGGAAA
ACATGCCGTTGGGGTATCCCATGCAGGAATGGGACATGGGAAACATGGACTGAGAAGAGGACAG
GGAAGGCCATTGTCTTTAGATTTGAACCGTTTCTGGATAAAGCATAGTGGGTCCTCCTACTCTT
TGAAGAAAAGCTTTTGGTTTGTTCTCCGTCATCTGAGCCTTTGTCACCTGTGCGACGTCTCATT
TTACTCACCTTGTACGAGGACCTGGGCTAGATTTTTGTGCTTTGTCTTTTTCTTCTTTTTTTTC
TTTTTGTTTTTTTCCTTTTGAACCAGCCACCTTATAAGAAGATGATTTACCATATGAAAATGCT
CATTCCTTCAGGAAAACTAATATCTCTATCTTCATCTATTTTTGTGGAAATACAAAATGGTTGG
TTTAACATAGAGGGGATATTTTTGAAGATGTAATTGTTTTTTGTTTTGTTTTGTTTTGTTTTAC
TTAATCTTGTAGCAATCGTTGAGTTCTGTTTAAAGAACTTGCTCTCAGAAAAGCACTGGCTAAA
ATGTTTAAGTGCTGATCTTTAAAATGTTTGTAATGCGCTTTGTCTGTGCTTCCGAGGGTACCTC
AAGGTTTCGTCCTTTCTACAACAGTGGCACGACCATAAACAGACCTTGCAATGTTGTGTTTATG
TTGAAACTCAGTGAAGACTTAATTCGATGATAGCTCTCTTAGTTTGCAATTATATATGTATGTG
CAGCTTGAAAGGGGCATTTTCTTTTAAAGAGCCACAAAGTAAAGGGTATTTCTCCAAAATAGTT
CTTGGAAGTGACTAACAATTAAATTTAGGTTAATGAGCAATACTTCTCTGTGTAGTCCAGCCTA
TCTTAACAATTAGGAATAGAGCTTACATACAGCTTCAAAATAGGAAAAAGCAACACACTTAGCG
ATGATAACTGTGGATCTCACTGACAAATTTTCCTAACTTCTAACCATTCATTCATGGCTGTTTC
AAAGGTCATAATTTGGATGACTTTTGTTTTCTGGAGTATCAGCACATGCCAAAGTGCTGACTAT
CCCCCATTTCTGTAAACTGAAAAGTAATGTATTCTGGATGTAATGTTTTAATTTGATCATTCTG
CAAGATTTTTCATTTGCTTTTAAGTGTAATTAGTTTCTCAAAAATTAGAGCAAAATAAAAGTGG
TAATGGATTTAAGTTTATGCTTCAATTACACAAACTGGTTGAAAGACTGAAAACTTGAGCAGTA
AACTTCCCATGGCCCAGAAGATAAAGGAGTGAAGTTTGAAGTCACTTGAAGATTCAAGAGAAGA
TTAGGCAAAGGTTAGGACTATGAAGGTAGCAATGGCTGGCAAATCAAAGAAGCAGCATATTTTT
TTTTTCCTTTCAGTTGCTCCCAGCCATAGAGGATGTTAGTGTAGTACAGATGCTTTTATTTGAT
AATGTTTCTCAAATTCTCCCATTTCTCTCAGCCCACACAAAACAGAAGGTTAAGTCACGTGCTA
CATTCTGGTTTTAATTGTGAACTTCATGGGTGAGAATACTTTGCACATTAGCAACACTACAAGC
AGCTAGGCAGAATTCTCCCAACTCATTTCCAAACATTTCACTTGGCTATATCGATAGATATTTG
TTTCTCTCCCTGCTGTGTTTTGAATTATAAACCCAGTTCATCTCGTGTATCCACTTGTATCTTG
ACTCCATCATTTCTTCATCTTGATTTTCCTTTAACACAGTCTTCACATTTTTATCAGTAGAGTC
TAGACTTAAGGTAGCTTACCAGTTTAGGAACTTTAGCATCCTGATAATGGTCTCATTTAATTCT
ATGCATTTTTATCTGGATGTTGATAACAAATAAAAATTGCATCTGCATAAACATGTGGAGCGTA
GAGTTGAGTGAATCTATCAAGTCATGTTGTCTTGAATCCTTGAATCCAGTGGTAAGAACTGAAC
ACTCAGCAGTTCCCGTGAGGGAGCCTTATTGGTTGGTATCACATTTCCCCTTGGGATATATTAA
CTTACATCGCAGTGTCTCCTAAAACACTACCACACTTGAAGTCACTGAGCTCACTTCATTGAAT
TTAATCAGATAAGGGAAGATAAGAGGACTAACTTGTTTTCTTCTTCATTATCATTCTGGATTGT
AAAAGAAAGTAGATAATGTAGTGGTTTTTGCTCTGATATCCTCATAACTATGCCCAAAACATGA
TTTGGTTCAAGACCAAAGGAAAGGGAAGAATCTAAATTCTATGGCGTGCAACAAAGGCGTGAGC
TCGCCCTATGAGAACAGGCATAGGTAACAGTGGCCCACTGTCATCAAAGGAGGGGACCAGAATC
TAATAAAGGAGAAAGAACATGTTTCTCTAACTATCCAGCATCCCTCAGTGTTTTAACATTACTG
TTACAAGGAGAAGTAATAAAGGGAGCTATACTATAGCAAAATAAGTAATCTGAATTTATTTGCA
TATCAAGTGCTATTACACCCTGGTCTGGATTCTCACTTTAAAGTATGACTGCTATACAGAAGGG
TCACTGCCTCCTGACTCTCTGAATTCATTAGACCCACTCTACTTTTGACTGTTTTACAACTTAA
ATTTCCTTCTATTTGAAAGCCTGCACATTTGACACCAGAAGACCTTATTATTCTATATGCCATC
TACTATTCCACAAATGAACTCTCTACAGCAAGGAACCACACATTGTTGGCTGTTAGAATCCCCG
CAGGATATCTGATTTTTCCTTGATAATTTCTGAAGAACCTCTGACATTTATACTCTAAACATTT
TTCTAAACCAAGTTGATATATTATCTTTTACCCATTCTTTTAACTCTTCCAACTTTTCTTTGTT
GAATTCATTATTGAGATTTTCATTATGTTCACTCCCCAAAACAGAAATATTATCCTAAAATTTA
TAGAGAGAATGAGAGTATTCCAAAAATACTGAAGAACACATTTCCCAAAGTTGTAACATTAAAA
TAATATGTTCTAGAGGAGCTCACCATTATTTTACAAATAGTATTTGCCTGTTCCCAAGCTTGTA
GAACATGGGACAGGAAGAAGCCTTAAGACCACTATCTGACTGGATGCTGTGGTTGTAATTTCAA
CTGACAGAGACTGCACTTTTCTAAATTGCATGCTGTCCCTTATGAGAAGCATCCCTGTGTGAAG
TAGCATTTGCCTAACTAGTCAGTGGGAATGGCAGTAAGTGATGGACCAGGACACACTGTTTTGA
CTGAGGAGTGGGTCAGCAGGATGATTGAGTGTGAACTCAGTGTTTCACTGAATTCTGACCAAGC
TGTGGTTTATTGTTGCAGAACTTCATTTACCTCATGATAAAAACATGGGTTAATACTACCTAAT
AGGATGGCTGTGAAAGTTGGGAAACATACAGATGTACCTGACTTACAGCATAGATGTTCAAACA
AGTAGCAGCTTTCTCAAACAACCATCAATTCAGCAAGTTGGTTACTAAATTGAGCTCTTAACTC
TTCTTTCCCTTAATATTGCATAATCATTATTCTGCACCTAAATAGACCAATGACTACTTTTCTG
TAGAGTCATTGAAAAGGGAATCTTTGTTCCCTCTTACTTATGGGAGATAAAATGTTAACTTCCT
AATGAACTCTGAGTTTTTAATGTGGTGTTTCTGAAGAAAAGCTAATTAAACATTTAGTTGTATG
TAGCCAGAGTCTGAGTCATTTTCACACACAACTCCATATATTGCTGTCTCCAAAATTAGGAGGG
CAGTGTCACCAAGCCACAGACCTTTGTAGTTGTCAGATATACATTGTGTTTCTGTGGCATTGGA
CTAAGAATGTTCTCTTCTCTGCCCCCCTTGTTTTTCCTTCCCTTGGAGGAAAAGTTGCACAATA
TGGTGTGGAAAAAAAAAGTCTCCTTCATGGAAAGGGAGGGAAACACTCCCTTTACAATCTCAGT
CAGCAGATTCACTCTACTGGAGAAAAAAAAAGGAAACAATTTTATTGGAAGCAGATGTTGACAC
TGCGTCGTTACTGAAGATAGAAAGAGTTCACTGAGTCGTTGCAGTTACAAAGGGGTATTGATGG
CACTCAAGGTCCCTGTGGTGGGCCACCTTCCCAGCTGTGGGAGGACAGCAGAAGCTGTTTGCAA
CCCAAAATGAAGTCAGCCTGTGATTTCAATGTGCAAGAAACACCAAGGACTAAACTTGTTTGTT
TGGTGTAATTTTTTCCCCTGCAGAATGCATAATATTTATCTTTCATATATATTAAGGCTGGAAA
GAAGAAACTGGGAAAGGGAATAACACTCGAAATGTATATAAGAAATACTCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001414722	(Get FASTA)	NCBI Sequence Viewer
	NP_001414723	(Get FASTA)	NCBI Sequence Viewer
	XP_006248043	(Get FASTA)	NCBI Sequence Viewer
	XP_006248044	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75911	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051348
	ENSRNOP00000051348.4

RefSeq Acc Id:	XP_006248043 ⟸ XM_006247981
- Peptide Label:	isoform X1
- UniProtKB:	A6K4X1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSCAEVMYHPQPYGAPQYLPNPVAAATCPTACYHPAPQPGQQKLAVYSKMQDSLEVTLPSKQEE EEEEEDEDEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDEHFSRALGQANTLHPESAISKSK MGLTPLWRDSSALSSQRSNFPTSFWTSSYQPPPAPCLGGVHPDFQVTAPHGTFTTADPNSWPGH GLHQTGPAPPPTASESWHYPLASQVSPSYSHMHDMYMRHHHPHAHMHHRHHHHHHHPTAGSALD PAYGHLLMPSVRAARIPAPQCDITKTDLTTATTATSAWAGAFHGTVDIVPSVGFETGLQHQDKS KESTWY hide sequence

RefSeq Acc Id:	XP_006248044 ⟸ XM_006247982
- Peptide Label:	isoform X2
- UniProtKB:	A6K4X1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSCAEVMYHPQPYGAPQYLPNPVAAATCPTACYHPAPQPGQQGDIGSVVDEHFSRALGQANTLH PESAISKSKMGLTPLWRDSSALSSQRSNFPTSFWTSSYQPPPAPCLGGVHPDFQVTAPHGTFTT ADPNSWPGHGLHQTGPAPPPTASESWHYPLASQVSPSYSHMHDMYMRHHHPHAHMHHRHHHHHH HPTAGSALDPAYGHLLMPSVRAARIPAPQCDITKTDLTTATTATSAWAGAFHGTVDIVPSVGFE TGLQHQDKSKESTWY hide sequence

Ensembl Acc Id:

ENSRNOP00000051348 ⟸ ENSRNOT00000042316

RefSeq Acc Id:	NP_001414722 ⟸ NM_001427793
- Peptide Label:	isoform 1
- UniProtKB:	D3ZZ09 (UniProtKB/TrEMBL), A6K4X1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414723 ⟸ NM_001427794
- Peptide Label:	isoform 2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZZ09-F1-model_v2	AlphaFold	D3ZZ09	1-327	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698001

Promoter ID:

EPDNEW_R8525

Type:

single initiation site

Name:

Vgll3_1

Description:

vestigial-like family member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	3,119,801 - 3,119,861	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560030	AgrOrtholog
BioCyc Gene	G2FUF-22305	BioCyc
Ensembl Genes	ENSRNOG00000028774	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000042316	ENTREZGENE
	ENSRNOT00000042316.7	UniProtKB/TrEMBL
InterPro	DUF_TDU	UniProtKB/TrEMBL
	Vg_Tdu	UniProtKB/TrEMBL
NCBI Gene	498038	ENTREZGENE
PANTHER	PTHR15950	UniProtKB/TrEMBL
	TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 3	UniProtKB/TrEMBL
Pfam	Vg_Tdu	UniProtKB/TrEMBL
PhenoGen	Vgll3	PhenoGen
RatGTEx	ENSRNOG00000028774	RatGTEx
SMART	TDU	UniProtKB/TrEMBL
UniProt	A6K4X1	ENTREZGENE, UniProtKB/TrEMBL
	D3ZZ09	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-03-13	Vgll3	vestigial-like family member 3	Vgll3	vestigial like 3 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-28	Vgll3	vestigial like 3 (Drosophila)	RGD1560030_predicted	similar to colon carcinoma related protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560030_predicted	similar to colon carcinoma related protein (predicted)	LOC498038	similar to colon carcinoma related protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498038	similar to colon carcinoma related protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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