Naa30 (N(alpha)-acetyltransferase 30, NatC catalytic subunit) - Rat Genome Database

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Gene: Naa30 (N(alpha)-acetyltransferase 30, NatC catalytic subunit) Rattus norvegicus
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Symbol: Naa30
Name: N(alpha)-acetyltransferase 30, NatC catalytic subunit
RGD ID: 1559923
Description: Predicted to enable protein-N-terminal amino-acid acetyltransferase activity. Predicted to be involved in protein stabilization. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of NatC complex. Orthologous to human NAA30 (N-alpha-acetyltransferase 30, NatC catalytic subunit); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amitrole; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC498489; LOC498489; N-acetyltransferase 12 (GCN5-related, putative); N-alpha-acetyltransferase 30; N-alpha-acetyltransferase 30, NatC catalytic subunit; Nat12; RGD1559923; similar to chromosome 14 open reading frame 35
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81524,935,060 - 24,954,435 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1524,935,260 - 24,954,437 (+)EnsemblGRCr8
mRatBN7.21522,454,914 - 22,474,789 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1522,455,662 - 22,474,789 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1525,227,770 - 25,246,769 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01526,194,458 - 26,213,423 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01524,436,272 - 24,455,276 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01526,032,760 - 26,052,774 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1526,033,791 - 26,052,753 (+)Ensemblrn6Rnor6.0
Rnor_5.01529,961,843 - 29,982,055 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41525,155,223 - 25,174,185 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1522,832,501 - 22,851,459 (+)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
NatC complex  (IBA,IEA,ISO)
nucleus  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19398576   PMID:25732826  


Genomics

Comparative Map Data
Naa30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81524,935,060 - 24,954,435 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1524,935,260 - 24,954,437 (+)EnsemblGRCr8
mRatBN7.21522,454,914 - 22,474,789 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1522,455,662 - 22,474,789 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1525,227,770 - 25,246,769 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01526,194,458 - 26,213,423 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01524,436,272 - 24,455,276 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01526,032,760 - 26,052,774 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1526,033,791 - 26,052,753 (+)Ensemblrn6Rnor6.0
Rnor_5.01529,961,843 - 29,982,055 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41525,155,223 - 25,174,185 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1522,832,501 - 22,851,459 (+)NCBICelera
Cytogenetic Map15p14NCBI
NAA30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381457,390,586 - 57,415,906 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1457,390,544 - 57,415,906 (+)Ensemblhg38GRCh38
GRCh371457,857,304 - 57,882,624 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361456,927,024 - 56,947,636 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341456,927,023 - 56,947,636NCBI
Celera1437,907,349 - 37,929,551 (+)NCBICelera
Cytogenetic Map14q22.3NCBI
HuRef1438,022,011 - 38,044,214 (+)NCBIHuRef
CHM1_11457,795,881 - 57,818,076 (+)NCBICHM1_1
T2T-CHM13v2.01451,597,048 - 51,622,359 (+)NCBIT2T-CHM13v2.0
Naa30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391449,409,703 - 49,428,346 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1449,409,683 - 49,428,488 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381449,172,246 - 49,190,889 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1449,172,226 - 49,191,031 (+)Ensemblmm10GRCm38
MGSCv371449,791,902 - 49,810,706 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361448,094,178 - 48,112,982 (+)NCBIMGSCv36mm8
Celera1445,373,858 - 45,392,263 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1425.42NCBI
Naa30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546611,287,789 - 11,308,449 (+)Ensembl
ChiLan1.0NW_00495546611,287,789 - 11,308,449 (+)NCBIChiLan1.0ChiLan1.0
NAA30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21558,495,764 - 58,517,956 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11457,712,143 - 57,734,470 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01437,960,067 - 37,982,287 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11456,230,694 - 56,252,718 (+)NCBIPanPan1.1PanPan1.1panPan2
NAA30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1832,939,442 - 32,959,854 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl832,939,953 - 32,957,240 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha832,707,073 - 32,727,512 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0833,190,309 - 33,210,774 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl833,190,816 - 33,207,406 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1832,793,445 - 32,813,895 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0832,869,026 - 32,889,470 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0833,245,052 - 33,265,506 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Naa30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864072,213,773 - 72,235,124 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364951,956,333 - 1,977,905 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364951,956,575 - 1,977,911 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAA30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1186,530,136 - 186,555,891 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11186,529,789 - 186,553,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21207,102,836 - 207,112,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NAA30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12434,567,497 - 34,590,379 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2434,568,887 - 34,587,131 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605322,789,293 - 22,811,275 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Naa30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248842,421,389 - 2,442,701 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248842,420,998 - 2,444,952 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Naa30
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11273,865,820 - 73,884,302 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Naa30
41 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:588
Count of miRNA genes:297
Interacting mature miRNAs:364
Transcripts:ENSRNOT00000020074
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat

Markers in Region
AW322455  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21522,474,467 - 22,474,563 (+)MAPPERmRatBN7.2
Rnor_6.01526,052,432 - 26,052,527NCBIRnor6.0
Rnor_5.01529,981,713 - 29,981,808UniSTSRnor5.0
RGSC_v3.41525,173,864 - 25,173,959UniSTSRGSC3.4
Celera1522,851,138 - 22,851,233UniSTS
Cytogenetic Map15p14UniSTS
RH128623  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21522,474,345 - 22,474,561 (+)MAPPERmRatBN7.2
Rnor_6.01526,052,310 - 26,052,525NCBIRnor6.0
Rnor_5.01529,981,591 - 29,981,806UniSTSRnor5.0
RGSC_v3.41525,173,742 - 25,173,957UniSTSRGSC3.4
Celera1522,851,016 - 22,851,231UniSTS
Cytogenetic Map15p14UniSTS
AI447922  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21522,472,115 - 22,472,257 (+)MAPPERmRatBN7.2
Rnor_6.01526,050,080 - 26,050,221NCBIRnor6.0
Rnor_5.01529,979,361 - 29,979,502UniSTSRnor5.0
RGSC_v3.41525,171,512 - 25,171,653UniSTSRGSC3.4
Celera1522,848,786 - 22,848,927UniSTS
Cytogenetic Map15p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000020074   ⟹   ENSRNOP00000020074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1524,935,303 - 24,954,437 (+)Ensembl
mRatBN7.2 Ensembl1522,455,662 - 22,474,789 (+)Ensembl
Rnor_6.0 Ensembl1526,033,791 - 26,052,753 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000139531   ⟹   ENSRNOP00000104355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1524,935,260 - 24,950,849 (+)Ensembl
RefSeq Acc Id: NM_001109099   ⟹   NP_001102569
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,935,444 - 24,954,406 (+)NCBI
mRatBN7.21522,455,826 - 22,474,789 (+)NCBI
Rnor_6.01526,033,791 - 26,052,753 (+)NCBI
Rnor_5.01529,961,843 - 29,982,055 (+)NCBI
RGSC_v3.41525,155,223 - 25,174,185 (+)RGD
Celera1522,832,501 - 22,851,459 (+)RGD
Sequence:
RefSeq Acc Id: XM_006251813   ⟹   XP_006251875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81524,935,060 - 24,954,435 (+)NCBI
mRatBN7.21522,454,914 - 22,471,567 (+)NCBI
Rnor_6.01526,032,760 - 26,052,774 (+)NCBI
Rnor_5.01529,961,843 - 29,982,055 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001102569 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418520 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251875 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88390 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020074
  ENSRNOP00000020074.6
  ENSRNOP00000104355.1
RefSeq Acc Id: NP_001102569   ⟸   NM_001109099
- UniProtKB: D3ZWS6 (UniProtKB/TrEMBL),   A6KE85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251875   ⟸   XM_006251813
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000020074   ⟸   ENSRNOT00000020074
Ensembl Acc Id: ENSRNOP00000104355   ⟸   ENSRNOT00000139531
Protein Domains
N-acetyltransferase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWS6-F1-model_v2 AlphaFold D3ZWS6 1-362 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559923 AgrOrtholog
BioCyc Gene G2FUF-14106 BioCyc
Ensembl Genes ENSRNOG00000014192 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020074 ENTREZGENE
  ENSRNOT00000020074.7 UniProtKB/TrEMBL
  ENSRNOT00000139531.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.630.30 UniProtKB/TrEMBL
InterPro AcTrfase_GCN5-related UniProtKB/TrEMBL
  Acyl_CoA_acyltransferase UniProtKB/TrEMBL
  NAA30-like UniProtKB/TrEMBL
KEGG Report rno:498489 UniProtKB/TrEMBL
NCBI Gene 498489 ENTREZGENE
PANTHER N-ALPHA-ACETYLTRANSFERASE 30 UniProtKB/TrEMBL
  PTHR45896 UniProtKB/TrEMBL
Pfam Acetyltransf_1 UniProtKB/TrEMBL
PhenoGen Naa30 PhenoGen
PROSITE GNAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014192 RatGTEx
Superfamily-SCOP Acyl_CoA_acyltransferase UniProtKB/TrEMBL
UniProt A0ABK0L4I9_RAT UniProtKB/TrEMBL
  A6KE85 ENTREZGENE, UniProtKB/TrEMBL
  D3ZWS6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Naa30  N(alpha)-acetyltransferase 30, NatC catalytic subunit  Nat12  N-acetyltransferase 12 (GCN5-related, putative)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1559923  similar to chromosome 14 open reading frame 35   RGD1559923_predicted  similar to chromosome 14 open reading frame 35 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559923_predicted  similar to chromosome 14 open reading frame 35 (predicted)  LOC498489  similar to chromosome 14 open reading frame 35  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498489  similar to chromosome 14 open reading frame 35      Symbol and Name status set to provisional 70820 PROVISIONAL