Plekhs1 (pleckstrin homology domain containing S1) - Rat Genome Database

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Gene: Plekhs1 (pleckstrin homology domain containing S1) Rattus norvegicus
Analyze
Symbol: Plekhs1
Name: pleckstrin homology domain containing S1
RGD ID: 1559884
Description: Biomarker of glucose intolerance. Orthologous to human PLEKHS1 (pleckstrin homology domain containing S1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC499377; LOC499377; pleckstrin homology domain containing, family S member 1; pleckstrin homology domain-containing family S member 1; RGD1559884; similar to RIKEN cDNA 9930023K05; uncharacterized protein LOC499377
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Niddm24
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81265,500,524 - 265,533,352 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1265,500,830 - 265,533,350 (+)EnsemblGRCr8
mRatBN7.21255,495,634 - 255,525,353 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1255,495,634 - 255,525,353 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1263,705,127 - 263,735,141 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01270,411,166 - 270,441,179 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01263,057,573 - 263,087,651 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01277,261,493 - 277,294,194 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1277,261,681 - 277,291,370 (+)Ensemblrn6Rnor6.0
Rnor_5.01284,642,569 - 284,675,151 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41262,740,491 - 262,770,180 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1251,194,966 - 251,224,961 (+)NCBICelera
Cytogenetic Map1q55NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Plekhs1 and Prdx3 are candidate genes responsible for mild hyperglycemia associated with obesity in a new animal model of F344-fa-nidd6 rat. Kotoh J, etal., J Vet Med Sci. 2016 Aug 11.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Plekhs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81265,500,524 - 265,533,352 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1265,500,830 - 265,533,350 (+)EnsemblGRCr8
mRatBN7.21255,495,634 - 255,525,353 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1255,495,634 - 255,525,353 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1263,705,127 - 263,735,141 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01270,411,166 - 270,441,179 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01263,057,573 - 263,087,651 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01277,261,493 - 277,294,194 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1277,261,681 - 277,291,370 (+)Ensemblrn6Rnor6.0
Rnor_5.01284,642,569 - 284,675,151 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41262,740,491 - 262,770,180 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1251,194,966 - 251,224,961 (+)NCBICelera
Cytogenetic Map1q55NCBI
PLEKHS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810113,751,682 - 113,783,429 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10113,751,262 - 113,783,429 (+)Ensemblhg38GRCh38
GRCh3710115,511,441 - 115,543,188 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610115,501,203 - 115,532,181 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3410115,501,202 - 115,532,181NCBI
Celera10109,238,565 - 109,269,575 (+)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10109,139,023 - 109,169,611 (+)NCBIHuRef
CHM1_110115,793,257 - 115,824,244 (+)NCBICHM1_1
T2T-CHM13v2.010114,643,537 - 114,675,061 (+)NCBIT2T-CHM13v2.0
Plekhs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391956,445,705 - 56,475,161 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1956,450,072 - 56,475,184 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381956,457,275 - 56,486,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1956,461,640 - 56,486,752 (+)Ensemblmm10GRCm38
MGSCv371956,536,127 - 56,561,219 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361956,514,890 - 56,539,975 (+)NCBIMGSCv36mm8
Celera1958,649,118 - 58,674,285 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.86NCBI
Plekhs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543118,745,791 - 18,770,112 (+)Ensembl
ChiLan1.0NW_00495543118,745,990 - 18,798,517 (+)NCBIChiLan1.0ChiLan1.0
PLEKHS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28125,651,317 - 125,664,713 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110125,656,653 - 125,670,049 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010110,350,571 - 110,382,677 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110113,784,348 - 113,813,542 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10113,784,348 - 113,813,542 (+)EnsemblpanPan2panpan1.1
PLEKHS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12824,643,803 - 24,685,947 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2824,644,330 - 24,664,807 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2824,795,150 - 24,837,272 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02825,175,603 - 25,217,742 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2825,176,136 - 25,197,227 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12824,732,939 - 24,775,037 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02824,741,107 - 24,789,753 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02824,947,047 - 24,982,622 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Plekhs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721321,402,316 - 21,427,464 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364864,130,463 - 4,159,710 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364864,130,916 - 4,159,110 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLEKHS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14124,068,263 - 124,103,909 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114124,068,099 - 124,104,042 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PLEKHS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19106,641,332 - 106,654,595 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604867,842,331 - 67,873,135 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plekhs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473732,810,212 - 32,835,258 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473732,810,663 - 32,835,211 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Plekhs1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1259,680,700 - 59,706,155 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:105
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000022724
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1263946994269633915Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1578775Iddm21Insulin dependent diabetes mellitus QTL 214.13blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1245782829270518180Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1248619887269633915Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1247133834270518180Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1600390Niddm64Non-insulin dependent diabetes mellitus QTL 640.003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1257624997270518180Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1237995023269633915Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1255849111270518180Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1241569529269633915Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1243953669270518180Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1228180370266453608Rat

Markers in Region
RH134652  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21255,518,592 - 255,518,783 (+)MAPPERmRatBN7.2
Rnor_6.01277,284,612 - 277,284,802NCBIRnor6.0
Rnor_5.01284,665,569 - 284,665,759UniSTSRnor5.0
RGSC_v3.41262,763,422 - 262,763,612UniSTSRGSC3.4
Celera1251,218,203 - 251,218,393UniSTS
RH 3.4 Map11682.1UniSTS
Cytogenetic Map1q55UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 53 127 91 90 59 54 59 6 293 137 8 103 73 92 31 3 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000022724   ⟹   ENSRNOP00000022724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1255,495,634 - 255,525,353 (+)Ensembl
Rnor_6.0 Ensembl1277,261,681 - 277,291,370 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148722   ⟹   ENSRNOP00000103699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1265,500,830 - 265,533,350 (+)Ensembl
RefSeq Acc Id: NM_001134613   ⟹   NP_001128085
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81265,500,838 - 265,530,528 (+)NCBI
mRatBN7.21255,495,634 - 255,525,353 (+)NCBI
Rnor_6.01277,261,681 - 277,291,370 (+)NCBI
Rnor_5.01284,642,569 - 284,675,151 (+)NCBI
RGSC_v3.41262,740,491 - 262,770,180 (+)RGD
Celera1251,194,966 - 251,224,961 (+)RGD
Sequence:
RefSeq Acc Id: XM_063271784   ⟹   XP_063127854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81265,500,524 - 265,533,352 (+)NCBI
RefSeq Acc Id: XM_063271786   ⟹   XP_063127856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81265,500,524 - 265,533,352 (+)NCBI
RefSeq Acc Id: XM_063271787   ⟹   XP_063127857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81265,500,524 - 265,533,352 (+)NCBI
RefSeq Acc Id: XM_063271788   ⟹   XP_063127858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81265,500,524 - 265,533,352 (+)NCBI
RefSeq Acc Id: XM_063271789   ⟹   XP_063127859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81265,500,524 - 265,533,352 (+)NCBI
RefSeq Acc Id: XM_063271790   ⟹   XP_063127860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81265,500,524 - 265,533,352 (+)NCBI
RefSeq Acc Id: XM_063271791   ⟹   XP_063127861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81265,500,524 - 265,533,352 (+)NCBI
RefSeq Acc Id: NP_001128085   ⟸   NM_001134613
- UniProtKB: A6JI23 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022724   ⟸   ENSRNOT00000022724
RefSeq Acc Id: XP_063127854   ⟸   XM_063271784
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127859   ⟸   XM_063271789
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127856   ⟸   XM_063271786
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127860   ⟸   XM_063271790
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063127857   ⟸   XM_063271787
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063127858   ⟸   XM_063271788
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063127861   ⟸   XM_063271791
- Peptide Label: isoform X7
Ensembl Acc Id: ENSRNOP00000103699   ⟸   ENSRNOT00000148722
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZM82-F1-model_v2 AlphaFold D3ZM82 1-469 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559884 AgrOrtholog
BioCyc Gene G2FUF-55324 BioCyc
Ensembl Genes ENSRNOG00000016926 Ensembl
  ENSRNOG00000072172 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000148722 ENTREZGENE
  ENSRNOT00000148722.1 UniProtKB/TrEMBL
Gene3D-CATH Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  PLEKHS1 UniProtKB/TrEMBL
KEGG Report rno:499377 UniProtKB/TrEMBL
NCBI Gene 499377 ENTREZGENE
PANTHER PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY S MEMBER 1 UniProtKB/TrEMBL
  PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY S MEMBER 1 UniProtKB/TrEMBL
PhenoGen Plekhs1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016926 RatGTEx
  ENSRNOG00000072172 RatGTEx
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0ABK0L3J5_RAT UniProtKB/TrEMBL
  A6JI23 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Plekhs1  pleckstrin homology domain containing S1  Plekhs1  pleckstrin homology domain containing, family S member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-11 Plekhs1  pleckstrin homology domain containing, family S member 1  RGD1559884  similar to RIKEN cDNA 9930023K05  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1559884  similar to RIKEN cDNA 9930023K05   RGD1559884_predicted  similar to RIKEN cDNA 9930023K05 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559884_predicted  similar to RIKEN cDNA 9930023K05 (predicted)  LOC499377  similar to RIKEN cDNA 9930023K05  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499377  similar to RIKEN cDNA 9930023K05      Symbol and Name status set to provisional 70820 PROVISIONAL