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Gene: Nectin4 (nectin cell adhesion molecule 4) Rattus norvegicus

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Symbol:

Nectin4

Name:

nectin cell adhesion molecule 4

RGD ID:

1559826

Description:

Predicted to enable cell adhesion mediator activity; identical protein binding activity; and receptor ligand activity. Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within negative regulation of natural killer cell mediated cytotoxicity. Predicted to be located in anchoring junction and membrane. Predicted to be active in adherens junction and plasma membrane. Orthologous to human NECTIN4 (nectin cell adhesion molecule 4); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC498281; nectin-4; poliovirus receptor-related 4; poliovirus receptor-related protein 4; Pvrl4; RGD1559826; similar to nectin 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NECTIN4 (nectin cell adhesion molecule 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Nectin4 (nectin cell adhesion molecule 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nectin4 (nectin cell adhesion molecule 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NECTIN4 (nectin cell adhesion molecule 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NECTIN4 (nectin cell adhesion molecule 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nectin4 (nectin cell adhesion molecule 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NECTIN4 (nectin cell adhesion molecule 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NECTIN4 (nectin cell adhesion molecule 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nectin4 (nectin cell adhesion molecule 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Nectin4 (nectin cell adhesion molecule 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NECTIN4 (nectin cell adhesion molecule 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nectin4 (nectin cell adhesion molecule 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nectin4a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nectin4b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	nectin4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Fas3	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	Fas3	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,335,027 - 86,354,152 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	86,335,831 - 86,353,967 (+)	Ensembl				GRCr8
mRatBN7.2	13	83,802,589 - 83,821,711 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,803,184 - 83,821,709 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	86,308,949 - 86,327,473 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,707,160 - 87,725,681 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,942,920 - 84,961,475 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,755,665 - 89,774,185 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,755,845 - 89,774,378 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	94,383,248 - 94,402,000 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	87,275,975 - 87,294,493 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	83,433,644 - 83,452,162 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ectodermal Dysplasia-Syndactyly Syndrome 1 (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

2-hydroxypropanoic acid (ISO)

3-chloropropane-1,2-diol (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clothianidin (ISO)

copper(II) chloride (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dibenzo[a,l]pyrene (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

furan (EXP)

gentamycin (EXP)

glyphosate (EXP)

ivermectin (ISO)

kojic acid (ISO)

Lasiocarpine (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-Nitrosopyrrolidine (ISO)

nitrogen dioxide (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

ouabain (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

PCB138 (EXP,ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

propanal (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

urethane (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA)

heterophilic cell-cell adhesion (IBA)

homophilic cell-cell adhesion (IBA)

negative regulation of natural killer cell mediated cytotoxicity (IEA,ISO)

signal transduction (IEA)

symbiont entry into host cell (IEA)

Cellular Component

adherens junction (IBA,IEA,ISO)

plasma membrane (IBA,IEA,ISO)

Molecular Function

cell adhesion mediator activity (IBA)

identical protein binding (IEA,ISO)

protein binding (ISO)

receptor ligand activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22902367	PMID:23376485	PMID:23533145	PMID:25468996

Genomics

Comparative Map Data

Nectin4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,335,027 - 86,354,152 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	86,335,831 - 86,353,967 (+)	Ensembl				GRCr8
mRatBN7.2	13	83,802,589 - 83,821,711 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,803,184 - 83,821,709 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	86,308,949 - 86,327,473 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,707,160 - 87,725,681 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,942,920 - 84,961,475 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,755,665 - 89,774,185 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,755,845 - 89,774,378 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	94,383,248 - 94,402,000 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	87,275,975 - 87,294,493 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	83,433,644 - 83,452,162 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

NECTIN4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	161,070,998 - 161,089,558 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	161,070,988 - 161,090,045 (-)	Ensembl			hg38	GRCh38
GRCh37	1	161,040,788 - 161,059,348 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	159,308,120 - 159,325,966 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	157,854,568 - 157,872,415	NCBI
Celera	1	134,107,964 - 134,126,560 (-)	NCBI		Celera
Cytogenetic Map	1	q23.3	NCBI
HuRef	1	132,398,195 - 132,416,810 (-)	NCBI		HuRef
CHM1_1	1	162,437,025 - 162,455,629 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	160,208,489 - 160,227,037 (-)	NCBI		T2T-CHM13v2.0

Nectin4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	171,197,741 - 171,215,855 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	171,197,667 - 171,216,166 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	171,370,173 - 171,388,287 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	171,370,099 - 171,388,598 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	173,300,304 - 173,318,418 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	173,207,073 - 173,225,273 (+)	NCBI		MGSCv36	mm8
Celera	1	173,821,772 - 173,839,427 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.37	NCBI

Nectin4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	12,841,369 - 12,858,329 (-)	Ensembl
ChiLan1.0	NW_004955468	12,841,369 - 12,858,331 (-)	NCBI	ChiLan1.0	ChiLan1.0

NECTIN4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	88,762,669 - 88,781,005 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	88,452,726 - 88,471,340 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	136,484,235 - 136,502,478 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	140,396,347 - 140,415,606 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	140,397,817 - 140,414,897 (-)	Ensembl			panPan2	panpan1.1

NECTIN4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,378,144 - 21,392,419 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,375,556 - 21,392,632 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	21,452,164 - 21,466,905 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	21,487,177 - 21,512,187 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	21,490,338 - 21,512,183 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,384,036 - 21,398,772 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	21,798,014 - 21,812,724 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	22,207,287 - 22,222,026 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Nectin4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	7,171,818 - 7,189,734 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936903	381,424 - 398,350 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936903	381,383 - 398,339 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NECTIN4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,355,407 - 89,374,358 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	89,356,935 - 89,374,358 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	97,211,258 - 97,227,217 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NECTIN4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	2,890,082 - 2,910,271 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	2,891,603 - 2,919,915 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	1,938,908 - 1,957,897 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nectin4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	281,675 - 299,324 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	281,769 - 299,240 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Nectin4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	50,541,041 - 50,557,856 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Nectin4
75 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	215
Count of miRNA genes:	141
Interacting mature miRNAs:	174
Transcripts:	ENSRNOT00000005550
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	9	56	155	78	80	49	67	49	6	301	148	9	135	80	92	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005550 ⟹ ENSRNOP00000005550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	86,335,839 - 86,353,870 (+)	Ensembl
mRatBN7.2 Ensembl	13	83,803,184 - 83,821,709 (+)	Ensembl
Rnor_6.0 Ensembl	13	89,755,845 - 89,774,378 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101973 ⟹ ENSRNOP00000077279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	86,335,839 - 86,353,967 (+)	Ensembl
mRatBN7.2 Ensembl	13	83,803,184 - 83,821,443 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110850 ⟹ ENSRNOP00000076530

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	86,335,831 - 86,353,869 (+)	Ensembl
mRatBN7.2 Ensembl	13	83,803,184 - 83,821,427 (+)	Ensembl

RefSeq Acc Id:

NM_001109076 ⟹ NP_001102546

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,335,628 - 86,354,152 (+)	NCBI
mRatBN7.2	13	83,803,184 - 83,821,709 (+)	NCBI
Rnor_6.0	13	89,755,665 - 89,774,183 (+)	NCBI
Rnor_5.0	13	94,383,248 - 94,402,000 (+)	NCBI
RGSC_v3.4	13	87,275,975 - 87,294,493 (+)	RGD
Celera	13	83,433,644 - 83,452,162 (+)	RGD

Sequence:

show sequence

ACAGTCAGGCCCATGCTCTCACAGGTAAAACCCCTGTTGAGGATAAGATCCCACTGCCTGCACC
CAGATCCTTTCCTTCTTCCCTCCCTCTCTGGCGCCCATTAGCTAGCCCAGGCCGTGGGGGCGGT
GGCTGCGAAGTCTCCTCTCTGTGCCAGGCCCGGCCCCCGGAGACGCACCTGTTCTGACCTGCTT
AGCAGGTTCCCAGGTTTCTGCCTTCGTTGTTGGCCACGGCGTGGGAAGCAGCTCTGGGGGAGCT
CAGGGCTCCCGATTACGGCTTCTCCAGGGTAGCCACGGCTGGGTGGGTAGAACTGGGGTCTGGG
TCCCTTAGTGGAGACCCAAGTGGGATAGGCAGGTTCGTCAGTGCCTGACTTCCTGCCTTCTGGG
TCAGAGCCTTACACAGCTCCAGAACCGGCTCCCAGGGAGAACTCCGTGGAACTCCAGAATCACT
GGGCAGGTCTGCCTTTCAGCCAATGCCCCTGTCCCTGGGAGCCGAGATGTGGGGCCCTGAAGCC
TGGCTGCTGCTGCTGTTCCTGGCATCATTTACAGGCCGATACTCCGCGGGTGAGCTGGAGACCT
CGGACTTAGTGACAGTGGTGCTGGGCCAGGACGCAAAACTGCCCTGCTTCTACCGAGGGGATCC
CGATGAACAGGTGGGGCAGGTGGCATGGGCTCGAGTGGACCCAAACGAAGGCACCCGGGAGCTG
GCCCTGCTGCACTCCAAATACGGGCTTCATGTGAGCCCTGCCTATGAGGACCGCGTGGAGCAAC
CACCACCCCCACGAGACCCTCTAGACGGCTCCATCCTCCTGCGCAATGCTGTGCAAGCAGATGA
GGGCGAGTACGAATGCAGAGTCAGCACCTTCCCAGCCGGCAGCTTTCAGGCACGGATGCGGCTT
CGTGTTCTGGTGCCTCCCCTGCCTTCCCTGAATCCTGGTCCACCACTAGAAGAAGGCCAGGGCC
TGACGTTGGCAGCCTCTTGCACTGCTGAGGGCAGCCCAGCTCCCAGTGTGACCTGGGACACAGA
GGTCAAAGGCACACAGTCCAGCCGCTCTTTCAAGCACTCCCGCTCAGCTGCCGTCACTTCAGAG
TTTCATCTGGTGCCCAGCCGAAGCATGAATGGGCAGCCACTGACCTGTGTGGTGTCTCACCCTG
GCCTGCTCCAGGACCAAAGAATCACCCACACCCTCCAAGTGGCCTTCCTTGCGGAAGCCTCTGT
GAGGGGCCTTGAGGACCAAAACTTATGGCATGTTGGCCGAGAAGGAGCCACACTCAAATGCCTG
AGTGAAGGACAGCCCCCTCCCAAATACAACTGGACACGGCTGGATGGACCTCTGCCTAGTGGGG
TGCGAGTGAAAGGGGACACTCTGGGCTTCCCCCCACTGACTACTGAGCACAGTGGTGTCTACGT
CTGCCACGTCAGCAACGAACTTTCTTCGAGGGCTTCTCAAGTCACTGTAGAAGTTCTTGACCCT
GAGGATCCAGGAAAGCAGGTGGATCTGGTGTCTGCGTCAGTGGTCGTAGTGGGTGTGATTGCTG
CACTCCTGTTCTGTCTCCTGGTGGTGGTGGTGGTGCTCATGTCCCGATATCATCGCCGCAAAGC
CCAGCAGATGACCCAGAAATACGAGGAGGAGCTGACTTTGACCAGGGAGAACTCCATCCGGAGG
CTGCACTCTCACCACACGGACCCTAGGAGCCAGCCGGAGGAGAGTGTAGGGCTGAGAGCGGAGG
GCCACCCTGATAGTCTCAAGGACAACAGTAGCTGCTCTGTGATGAGTGAAGAGCCAGAGGGCCG
CAGCTACTCCACGTTGACCACAGTGAGAGAGATCGAAACACAGACTGAACTGCTCTCCCCAGGC
TCGGGGCGGACAGAGGAGGAGGACGATCAGGATGAAGGCATCAAACAGGCCATGAACCATTTTG
TTCAGGAAAATGGGACCCTGAGGGCCAAACCTACAGGCAATGGTATCTACATCAACGGGCGAGG
GCACTTGGTCTGACCCAGGCCTGCCTCCCTCCCTGAGGCCTGGCTCTTCTGCTTCCATGGGGGA
ACTTCAGCTCTTCTTAGGGCAAACACCCTTAAATGCCTGCATTTCTTTAGGAAGGTACTTCCCA
CCCTACTGACTGCTCCACTTTTACCTCCAATCCTGCTGTTCATCAGGAGGGCTCCGCTGGTTGA
GTGCCTCCCACCATTGAGTGTAGGTCATTCCGTGTGTGTGTGTGTGTGTGTGAACATTCATGGA
CTGTATGTGCATGAAGGGGTGACTGTCCATCCTATGCACCATCCTGTCATGGTAAGAGTCCAAG
TGAATGATATATGTGTGCCACAGGATCTGTGGCTGTGTGCCGAGAGCGTTACTAGGGTGTGGTT
TGTGAGTAGTGTGCCTTACGTGTGACCCCTGCCTGCAGAGGCAGGGATATTCCTCAGACCCCAG
AGCAGTATTAGCGAGGCAGAGGTTAGAAGTGAGAGGTGGAGACTGTCGCCAGATCCAGGTGTGC
GGGCATAACTGGAGCTAGAATCTGACCTCCAACGTGTGGGATCTGTGTTCCCACCCCTTGGGAA
TAAGTGTAAAGCAGACATCCAGGGGTCTGCCAGAGGCCAGAACTGTTACAGAAGCCCTCTGCCC
TCTGGTGGTCTGTGGGCCTGCTCCATGGACATACCTTCTGTAAACTCAACTCCAAGGGAGCTTC
CTGAGTTCTGCTCAGACTCCCTTAATAAGAGAAAAAGAAAATTTAGAACAAACAAACAAAAAGC
TTTATTGATTTATGTGCATTTTTTTGTTGTTTGTTTGTTTGTTTTAAAACTGGGCTTTAAACAG
CAAGGCCAGCCCACACAGGCATTCAAGAAAACCGTTTAGCAGACCCCCACAGCAGAGATTAATG
CCTGTGGTTCTGGAAAGTTCTCTTCCAAGGATGCCTTCACCCAGAGAGGTTCTGGGGAAGGAGC
TGACAGCTGAAGGAGCCTGGAGCTTGGGGTGTGAAGTACAAACACTGGATAGGAGGTTAGGGAT
AAGGTGCTTGACTCCCATGGTTCCTCAGATCTTGTCCTAGCTGTGTCTACAGAGGTTTGTGCCT
TCACGGAGTTGGGACTTGGTGTCAAGGGCTCCTGGTTCAGTTGTGTTGAGGGCAGAGGGTAGTG
GGAAGGTGGAAGTTCAGGTGAGGAGAAAGGGGTGTCATGGGTGAGGGTGAGAACAGGTCCTTCC
CCAGGGGTTTCTGAGTCAGTCATTTGGGGCTCTCTGGCACTTTGTACGTGTGGGACCTGGGGTT
AGATGTTAGGGTTTTGTTTTGTTTTTTTTAGCCCAAACGTTTGCAGCCAGAATACGGAGATTTA
GTATCCAAACCTTGTGTGGCCTGAAATCTGCTGGTCTGAAGGAGAAGCTCTCATTTCATCCCCA
AGTAACCCAGGACTTATGGACCCCAAGGATCTGGGGTCTTAGTGTGTATATTTCATGTAAATAT
ATGTATATTTGTACATAAAATGATATTCTGTTTTTAAATAAACAGATAAAACCCTTTTTGTCTG
ATTTCTGTCTTGCCCCTTGAACTGGGTAAGTCACAAGTGCTATGTATGTACTGAGTTTCTCTGT
GATCCCTTCTTTGCTCCCAGGCAAGGACCCAGATACTTAGAGCTCTGAGAGCCCTCAGGTAGGG
CAGTGTGGTTATAACCTCCTTTAGGGGAAGCCAGTGCCTTAGTTTGCAAAGTGTTTCTAATTTG
ACTGTACTGGAAACTTCCAGCAGCTGTGTGGCGTGGACAGCCGTGTACCCTTTTACAGACAAAG
AAACTGAAACTCAAAAGT

hide sequence

RefSeq Acc Id:

XM_006250256 ⟹ XP_006250318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,335,033 - 86,353,868 (+)	NCBI
mRatBN7.2	13	83,802,593 - 83,821,429 (+)	NCBI
Rnor_6.0	13	89,755,697 - 89,774,185 (+)	NCBI
Rnor_5.0	13	94,383,248 - 94,402,000 (+)	NCBI

Sequence:

show sequence

CCTGTTGAGGATAAGATCCCACTGCCTGCACCCAGATCCTTTCCTTCTTCCCTCCCTCTCTGGC
GCCCATTAGCTAGCCCAGGCCGTGGGGGCGGTGGCTGCGAAGTCTCCTCTCTGTGCCAGGCCCG
GCCCCCGGAGACGCACCTGTTCTGACCTGCTTAGCAGGTTCCCAGGTTTCTGCCTTCGTTGTTG
GCCACGGCGTGGGAAGCAGCTCTGGGGGAGCTCAGGGCTCCCGATTACGGCTTCTCCAGGGTAG
CCACGGCTGGGTGGGTAGAACTGGGGTCTGGGTCCCTTAGTGGAGACCCAAGTGGGATAGGCAG
GTTCGTCAGTGCCTGACTTCCTGCCTTCTGGGTCAGAGCCTTACACAGCTCCAGAACCGGCTCC
CAGGGAGAACTCCGTGGAACTCCAGAATCACTGGGCAGGTCTGCCTTTCAGCCAATGCCCCTGT
CCCTGGGAGCCGAGATGTGGGGCCCTGAAGCCTGGCTGCTGCTGCTGTTCCTGGCATCATTTAC
AGGCCGATACTCCGCGGGTGAGCTGGAGACCTCGGACTTAGTGACAGTGGTGCTGGGCCAGGAC
GCAAAACTGCCCTGCTTCTACCGAGGGGATCCCGATGAACAGGTGGGGCAGGTGGCATGGGCTC
GAGTGGACCCAAACGAAGGCACCCGGGAGCTGGCCCTGCTGCACTCCAAATACGGGCTTCATGT
GAGCCCTGCCTATGAGGACCGCGTGGAGCAACCACCACCCCCACGAGACCCTCTAGACGGCTCC
ATCCTCCTGCGCAATGCTGTGCAAGCAGATGAGGGCGAGTACGAATGCAGAGTCAGCACCTTCC
CAGCCGGCAGCTTTCAGGCACGGATGCGGCTTCGTGTTCTGGTGCCTCCCCTGCCTTCCCTGAA
TCCTGGTCCACCACTAGAAGAAGGCCAGGGCCTGACGTTGGCAGCCTCTTGCACTGCTGAGGGC
AGCCCAGCTCCCAGTGTGACCTGGGACACAGAGGTCAAAGGCACACAGTCCAGCCGCTCTTTCA
AGCACTCCCGCTCAGCTGCCGTCACTTCAGAGTTTCATCTGGTGCCCAGCCGAAGCATGAATGG
GCAGCCACTGACCTGTGTGGTGTCTCACCCTGGCCTGCTCCAGGACCAAAGAATCACCCACACC
CTCCAAGTGGCCTTCCTTGCGGAAGCCTCTGTGAGGGGCCTTGAGGACCAAAACTTATGGCATG
TTGGCCGAGAAGGAGCCACACTCAAATGCCTGAGTGAAGGACAGCCCCCTCCCAAATACAACTG
GACACGGCTGGATGGACCTCTGCCTAGTGGGGTGCGAGTGAAAGGGGACACTCTGGGCTTCCCC
CCACTGACTACTGAGCACAGTGGTGTCTACGTCTGCCACGTCAGCAACGAACTTTCTTCGAGGG
CTTCTCAAGTCACTGTAGAAGTTCTTGACCCTGAGGATCCAGGAAAGCAGGTGGATCTGGTGTC
TGCGTCAGTGGTCGTAGTGGGTGTGATTGCTGCACTCCTGTTCTGTCTCCTGGTGGTGGTGGTG
GTGCTCATGTCCCGATATCATCGCCGCAAAGCCCAGCAGATGACCCAGAAATACGAGGAGGAGC
TGACTTTGACCAGGGAGAACTCCATCCGGAGGCTGCACTCTCACCACACGGACCCTAGGAGCCA
GAGTGAAGAGCCAGAGGGCCGCAGCTACTCCACGTTGACCACAGTGAGAGAGATCGAAACACAG
ACTGAACTGCTCTCCCCAGGCTCGGGGCGGACAGAGGAGGAGGACGATCAGGATGAAGGCATCA
AACAGGCCATGAACCATTTTGTTCAGGAAAATGGGACCCTGAGGGCCAAACCTACAGGCAATGG
TATCTACATCAACGGGCGAGGGCACTTGGTCTGACCCAGGCCTGCCTCCCTCCCTGAGGCCTGG
CTCTTCTGCTTCCATGGGGGAACTTCAGCTCTTCTTAGGGCAAACACCCTTAAATGCCTGCATT
TCTTTAGGAAGGTACTTCCCACCCTACTGACTGCTCCACTTTTACCTCCAATCCTGCTGTTCAT
CAGGAGGGCTCCGCTGGTTGAGTGCCTCCCACCATTGAGTGTAGGTCATTCCGTGTGTGTGTGT
GTGTGTGTGAACATTCATGGACTGTATGTGCATGAAGGGGTGACTGTCCATCCTATGCACCATC
CTGTCATGGTAAGAGTCCAAGTGAATGATATATGTGTGCCACAGGATCTGTGGCTGTGTGCCGA
GAGCGTTACTAGGGTGTGGTTTGTGAGTAGTGTGCCTTACGTGTGACCCCTGCCTGCAGAGGCA
GGGATATTCCTCAGACCCCAGAGCAGTATTAGCGAGGCAGAGGTTAGAAGTGAGAGGTGGAGAC
TGTCGCCAGATCCAGGTGTGCGGGCATAACTGGAGCTAGAATCTGACCTCCAACGTGTGGGATC
TGTGTTCCCACCCCTTGGGAATAAGTGTAAAGCAGACATCCAGGGGTCTGCCAGAGGCCAGAAC
TGTTACAGAAGCCCTCTGCCCTCTGGTGGTCTGTGGGCCTGCTCCATGGACATACCTTCTGTAA
ACTCAACTCCAAGGGAGCTTCCTGAGTTCTGCTCAGACTCCCTTAATAAGAGAAAAAGAAAATT
TAGAACAAACAAACAAAAAGCTTTATTGATTTATGTGCATTTTTTTGTTGTTTGTTTGTTTGTT
TTAAAACTGGGCTTTAAACAGCAAGGCCAGCCCACACAGGCATTCAAGAAAACCGTTTAGCAGA
CCCCCACAGCAGAGATTAATGCCTGTGGTTCTGGAAAGTTCTCTTCCAAGGATGCCTTCACCCA
GAGAGGTTCTGGGGAAGGAGCTGACAGCTGAAGGAGCCTGGAGCTTGGGGTGTGAAGTACAAAC
ACTGGATAGGAGGTTAGGGATAAGGTGCTTGACTCCCATGGTTCCTCAGATCTTGTCCTAGCTG
TGTCTACAGAGGTTTGTGCCTTCACGGAGTTGGGACTTGGTGTCAAGGGCTCCTGGTTCAGTTG
TGTTGAGGGCAGAGGGTAGTGGGAAGGTGGAAGTTCAGGTGAGGAGAAAGGGGTGTCATGGGTG
AGGGTGAGAACAGGTCCTTCCCCAGGGGTTTCTGAGTCAGTCATTTGGGGCTCTCTGGCACTTT
GTACGTGTGGGACCTGGGGTTAGATGTTAGGGTTTTGTTTTGTTTTTTTTAGCCCAAACGTTTG
CAGCCAGAATACGGAGATTTAGTATCCAAACCTTGTGTGGCCTGAAATCTGCTGGTCTGAAGGA
GAAGCTCTCATTTCATCCCCAAGTAACCCAGGACTTATGGACCCCAAGGATCTGGGGTCTTAGT
GTGTATATTTCATGTAAATATATGTATATTTGTACATAAAATGATATTCTGTTTTTAAATAAAC
AGATAAAACCCTTTTTGTCTGATTTCTGTCTTGCCCCTTGAACTGGGTAAGTCACAAGTGCTAT
GTATGTACTGAGTTTCTCTGTGATCCCTTCTTTGCTCCCAGGCAAGGACCCAGATACTTAGAGC
TCTGAGAGCCCTCAGGTAGGGCAGTGTGGTTATAACCTCCTTTAGGGGAAGCCAGTGCCTTAGT
TTGCAAAGTGTTTCTAATTTGACTGTACTGGAAACTTCCAGCAGCTGTGTGGCGTGGACAGCCG
TGTACCCTTTTACAGACAAAGAAACTGAAACTCAAAAGTCA

hide sequence

RefSeq Acc Id:

XM_017598898 ⟹ XP_017454387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,335,028 - 86,353,868 (+)	NCBI
mRatBN7.2	13	83,802,590 - 83,821,711 (+)	NCBI
Rnor_6.0	13	89,755,697 - 89,774,185 (+)	NCBI

Sequence:

show sequence

CCTGTTGAGGATAAGATCCCACTGCCTGCACCCAGATCCTTTCCTTCTTCCCTCCCTCTCTGGC
GCCCATTAGCTAGCCCAGGCCGTGGGGGCGGTGGCTGCGAAGTCTCCTCTCTGTGCCAGGCCCG
GCCCCCGGAGACGCACCTGTTCTGACCTGCTTAGCAGGTTCCCAGGTTTCTGCCTTCGTTGTTG
GCCACGGCGTGGGAAGCAGCTCTGGGGGAGCTCAGGGCTCCCGATTACGGCTTCTCCAGGGTAG
CCACGGCTGGGTGGGTAGAACTGGGGTCTGGGTCCCTTAGTGGAGACCCAAGTGGGATAGGCAG
GTTCGTCAGTGCCTGACTTCCTGCCTTCTGGGTCAGAGCCTTACACAGCTCCAGAACCGGCTCC
CAGGGAGAACTCCGTGGAACTCCAGAATCACTGGGCAGGTCTGCCTTTCAGCCAATGCCCCTGT
CCCTGGGAGCCGAGATGTGGGGCCCTGAAGCCTGGCTGCTGCTGCTGTTCCTGGCATCATTTAC
AGGCCGATACTCCGCGGGTGAGCTGGAGACCTCGGACTTAGTGACAGTGGTGCTGGGCCAGGAC
GCAAAACTGCCCTGCTTCTACCGAGGGGATCCCGATGAACAGGTGGGGCAGGTGGCATGGGCTC
GAGTGGACCCAAACGAAGGCACCCGGGAGCTGGCCCTGCTGCACTCCAAATACGGGCTTCATGT
GAGCCCTGCCTATGAGGACCGCGTGGAGCAACCACCACCCCCACGAGACCCTCTAGACGGCTCC
ATCCTCCTGCGCAATGCTGTGCAAGCAGATGAGGGCGAGTACGAATGCAGAGTCAGCACCTTCC
CAGCCGGCAGCTTTCAGGCACGGATGCGGCTTCGTGTTCTGGTGCCTCCCCTGCCTTCCCTGAA
TCCTGGTCCACCACTAGAAGAAGGCCAGGGCCTGACGTTGGCAGCCTCTTGCACTGCTGAGGGC
AGCCCAGCTCCCAGTGTGACCTGGGACACAGAGGTCAAAGGCACACAGTCCAGCCGCTCTTTCA
AGCACTCCCGCTCAGCTGCCGTCACTTCAGAGTTTCATCTGGTGCCCAGCCGAAGCATGAATGG
GCAGCCACTGACCTGTGTGGTGTCTCACCCTGGCCTGCTCCAGGACCAAAGAATCACCCACACC
CTCCAAGTGGCCTTCCTTGCGGAAGCCTCTGTGAGGGGCCTTGAGGACCAAAACTTATGGCATG
TTGGCCGAGAAGGAGCCACACTCAAATGCCTGAGTGAAGGACAGCCCCCTCCCAAATACAACTG
GACACGGCTGGATGGACCTCTGCCTAGTGGGGTGCGAGTGAAAGGGGACACTCTGGGCTTCCCC
CCACTGACTACTGAGCACAGTGGTGTCTACGTCTGCCACGTCAGCAACGAACTTTCTTCGAGGG
CTTCTCAAGTCACTGTAGAAGTTCTTGCAGACCCTGAGGATCCAGGAAAGCAGGTGGATCTGGT
GTCTGCGTCAGTGGTCGTAGTGGGTGTGATTGCTGCACTCCTGTTCTGTCTCCTGGTGGTGGTG
GTGGTGCTCATGTCCCGATATCATCGCCGCAAAGCCCAGCAGATGACCCAGAAATACGAGGAGG
AGCTGACTTTGACCAGGGAGAACTCCATCCGGAGGCTGCACTCTCACCACACGGACCCTAGGAG
CCAGCCGGAGGAGAGTGTAGGGCTGAGAGCGGAGGGCCACCCTGATAGTCTCAAGGACAACAGT
AGCTGCTCTGTGATGAGTGAAGAGCCAGAGGGCCGCAGCTACTCCACGTTGACCACAGTGAGAG
AGATCGAAACACAGACTGAACTGCTCTCCCCAGGCTCGGGGCGGACAGAGGAGGAGGACGATCA
GGATGAAGGCATCAAACAGGCCATGAACCATTTTGTTCAGGAAAATGGGACCCTGAGGGCCAAA
CCTACAGGCAATGGTATCTACATCAACGGGCGAGGGCACTTGGTCTGACCCAGGCCTGCCTCCC
TCCCTGAGGCCTGGCTCTTCTGCTTCCATGGGGGAACTTCAGCTCTTCTTAGGGCAAACACCCT
TAAATGCCTGCATTTCTTTAGGAAGGTACTTCCCACCCTACTGACTGCTCCACTTTTACCTCCA
ATCCTGCTGTTCATCAGGAGGGCTCCGCTGGTTGAGTGCCTCCCACCATTGAGTGTAGGTCATT
CCGTGTGTGTGTGTGTGTGTGTGAACATTCATGGACTGTATGTGCATGAAGGGGTGACTGTCCA
TCCTATGCACCATCCTGTCATGGTAAGAGTCCAAGTGAATGATATATGTGTGCCACAGGATCTG
TGGCTGTGTGCCGAGAGCGTTACTAGGGTGTGGTTTGTGAGTAGTGTGCCTTACGTGTGACCCC
TGCCTGCAGAGGCAGGGATATTCCTCAGACCCCAGAGCAGTATTAGCGAGGCAGAGGTTAGAAG
TGAGAGGTGGAGACTGTCGCCAGATCCAGGTGTGCGGGCATAACTGGAGCTAGAATCTGACCTC
CAACGTGTGGGATCTGTGTTCCCACCCCTTGGGAATAAGTGTAAAGCAGACATCCAGGGGTCTG
CCAGAGGCCAGAACTGTTACAGAAGCCCTCTGCCCTCTGGTGGTCTGTGGGCCTGCTCCATGGA
CATACCTTCTGTAAACTCAACTCCAAGGGAGCTTCCTGAGTTCTGCTCAGACTCCCTTAATAAG
AGAAAAAGAAAATTTAGAACAAACAAACAAAAAGCTTTATTGATTTATGTGCATTTTTTTGTTG
TTTGTTTGTTTGTTTTAAAACTGGGCTTTAAACAGCAAGGCCAGCCCACACAGGCATTCAAGAA
AACCGTTTAGCAGACCCCCACAGCAGAGATTAATGCCTGTGGTTCTGGAAAGTTCTCTTCCAAG
GATGCCTTCACCCAGAGAGGTTCTGGGGAAGGAGCTGACAGCTGAAGGAGCCTGGAGCTTGGGG
TGTGAAGTACAAACACTGGATAGGAGGTTAGGGATAAGGTGCTTGACTCCCATGGTTCCTCAGA
TCTTGTCCTAGCTGTGTCTACAGAGGTTTGTGCCTTCACGGAGTTGGGACTTGGTGTCAAGGGC
TCCTGGTTCAGTTGTGTTGAGGGCAGAGGGTAGTGGGAAGGTGGAAGTTCAGGTGAGGAGAAAG
GGGTGTCATGGGTGAGGGTGAGAACAGGTCCTTCCCCAGGGGTTTCTGAGTCAGTCATTTGGGG
CTCTCTGGCACTTTGTACGTGTGGGACCTGGGGTTAGATGTTAGGGTTTTGTTTTGTTTTTTTT
AGCCCAAACGTTTGCAGCCAGAATACGGAGATTTAGTATCCAAACCTTGTGTGGCCTGAAATCT
GCTGGTCTGAAGGAGAAGCTCTCATTTCATCCCCAAGTAACCCAGGACTTATGGACCCCAAGGA
TCTGGGGTCTTAGTGTGTATATTTCATGTAAATATATGTATATTTGTACATAAAATGATATTCT
GTTTTTAAATAAACAGATAAAACCCTTTTTGTCTGATTTCTGTCTTGCCCCTTGAACTGGGTAA
GTCACAAGTGCTATGTATGTACTGAGTTTCTCTGTGATCCCTTCTTTGCTCCCAGGCAAGGACC
CAGATACTTAGAGCTCTGAGAGCCCTCAGGTAGGGCAGTGTGGTTATAACCTCCTTTAGGGGAA
GCCAGTGCCTTAGTTTGCAAAGTGTTTCTAATTTGACTGTACTGGAAACTTCCAGCAGCTGTGT
GGCGTGGACAGCCGTGTACCCTTTTACAGACAAAGAAACTGAAACTCAAAAGTCA

hide sequence

RefSeq Acc Id:

XM_039090982 ⟹ XP_038946910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,335,028 - 86,353,868 (+)	NCBI
mRatBN7.2	13	83,802,590 - 83,821,711 (+)	NCBI

RefSeq Acc Id:

XM_039090983 ⟹ XP_038946911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,335,027 - 86,353,868 (+)	NCBI
mRatBN7.2	13	83,802,589 - 83,821,711 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102546	(Get FASTA)	NCBI Sequence Viewer
	NP_001416736	(Get FASTA)	NCBI Sequence Viewer
	NP_001416737	(Get FASTA)	NCBI Sequence Viewer
	NP_001416738	(Get FASTA)	NCBI Sequence Viewer
	XP_006250318	(Get FASTA)	NCBI Sequence Viewer
	XP_017454387	(Get FASTA)	NCBI Sequence Viewer
	XP_038946910	(Get FASTA)	NCBI Sequence Viewer
	XP_038946911	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94645	(Get FASTA)	NCBI Sequence Viewer
	EDL94646	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005550
	ENSRNOP00000005550.4
	ENSRNOP00000076530
	ENSRNOP00000076530.1
	ENSRNOP00000077279
	ENSRNOP00000077279.1

RefSeq Acc Id:	NP_001102546 ⟸ NM_001109076
- Peptide Label:	precursor
- UniProtKB:	A6JFY9 (UniProtKB/TrEMBL), A0A8I5YBQ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLSLGAEMWGPEAWLLLLFLASFTGRYSAGELETSDLVTVVLGQDAKLPCFYRGDPDEQVGQV AWARVDPNEGTRELALLHSKYGLHVSPAYEDRVEQPPPPRDPLDGSILLRNAVQADEGEYECRV STFPAGSFQARMRLRVLVPPLPSLNPGPPLEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTQSS RSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHTLQVAFLAEASVRGLEDQN LWHVGREGATLKCLSEGQPPPKYNWTRLDGPLPSGVRVKGDTLGFPPLTTEHSGVYVCHVSNEL SSRASQVTVEVLDPEDPGKQVDLVSASVVVVGVIAALLFCLLVVVVVLMSRYHRRKAQQMTQKY EEELTLTRENSIRRLHSHHTDPRSQPEESVGLRAEGHPDSLKDNSSCSVMSEEPEGRSYSTLTT VREIETQTELLSPGSGRTEEEDDQDEGIKQAMNHFVQENGTLRAKPTGNGIYINGRGHLV hide sequence

RefSeq Acc Id:

XP_006250318 ⟸ XM_006250256

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPLSLGAEMWGPEAWLLLLFLASFTGRYSAGELETSDLVTVVLGQDAKLPCFYRGDPDEQVGQV
AWARVDPNEGTRELALLHSKYGLHVSPAYEDRVEQPPPPRDPLDGSILLRNAVQADEGEYECRV
STFPAGSFQARMRLRVLVPPLPSLNPGPPLEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTQSS
RSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHTLQVAFLAEASVRGLEDQN
LWHVGREGATLKCLSEGQPPPKYNWTRLDGPLPSGVRVKGDTLGFPPLTTEHSGVYVCHVSNEL
SSRASQVTVEVLDPEDPGKQVDLVSASVVVVGVIAALLFCLLVVVVVLMSRYHRRKAQQMTQKY
EEELTLTRENSIRRLHSHHTDPRSQSEEPEGRSYSTLTTVREIETQTELLSPGSGRTEEEDDQD
EGIKQAMNHFVQENGTLRAKPTGNGIYINGRGHLV

hide sequence

RefSeq Acc Id:

XP_017454387 ⟸ XM_017598898

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPLSLGAEMWGPEAWLLLLFLASFTGRYSAGELETSDLVTVVLGQDAKLPCFYRGDPDEQVGQV
AWARVDPNEGTRELALLHSKYGLHVSPAYEDRVEQPPPPRDPLDGSILLRNAVQADEGEYECRV
STFPAGSFQARMRLRVLVPPLPSLNPGPPLEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTQSS
RSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHTLQVAFLAEASVRGLEDQN
LWHVGREGATLKCLSEGQPPPKYNWTRLDGPLPSGVRVKGDTLGFPPLTTEHSGVYVCHVSNEL
SSRASQVTVEVLADPEDPGKQVDLVSASVVVVGVIAALLFCLLVVVVVLMSRYHRRKAQQMTQK
YEEELTLTRENSIRRLHSHHTDPRSQPEESVGLRAEGHPDSLKDNSSCSVMSEEPEGRSYSTLT
TVREIETQTELLSPGSGRTEEEDDQDEGIKQAMNHFVQENGTLRAKPTGNGIYINGRGHLV

hide sequence

Ensembl Acc Id:

ENSRNOP00000005550 ⟸ ENSRNOT00000005550

RefSeq Acc Id:	XP_038946911 ⟸ XM_039090983
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5Y5A1 (UniProtKB/TrEMBL), A0A8I5YBQ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946910 ⟸ XM_039090982
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000076530 ⟸ ENSRNOT00000110850

Ensembl Acc Id:

ENSRNOP00000077279 ⟸ ENSRNOT00000101973

Protein Domains

Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZET1-F1-model_v2	AlphaFold	D3ZET1	1-508	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559826	AgrOrtholog
BioCyc Gene	G2FUF-17370	BioCyc
Ensembl Genes	ENSRNOG00000004029	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005550	ENTREZGENE
	ENSRNOT00000005550.8	UniProtKB/TrEMBL
	ENSRNOT00000101973	ENTREZGENE
	ENSRNOT00000101973.2	UniProtKB/TrEMBL
	ENSRNOT00000110850	ENTREZGENE
	ENSRNOT00000110850.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	CD80_C2-set	UniProtKB/TrEMBL
	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
	IgC1_2_Nectin-3-4-like	UniProtKB/TrEMBL
	Nectin/Nectin-like	UniProtKB/TrEMBL
KEGG Report	rno:498281	UniProtKB/TrEMBL
NCBI Gene	498281	ENTREZGENE
PANTHER	NECTIN-RELATED	UniProtKB/TrEMBL
	PTHR23277:SF11	UniProtKB/TrEMBL
Pfam	C2-set_2	UniProtKB/TrEMBL
	Ig_3	UniProtKB/TrEMBL
	V-set	UniProtKB/TrEMBL
PhenoGen	Nectin4	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004029	RatGTEx
SMART	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A8I5Y5A1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5YBQ6	ENTREZGENE, UniProtKB/TrEMBL
	A6JFY9	ENTREZGENE, UniProtKB/TrEMBL
	A6JFZ0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZET1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Nectin4	nectin cell adhesion molecule 4	Pvrl4	poliovirus receptor-related 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-28	Pvrl4	poliovirus receptor-related 4	RGD1559826_predicted	similar to nectin 4 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1559826_predicted	similar to nectin 4 (predicted)	LOC498281	similar to nectin 4	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498281	similar to nectin 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM