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Gene: Tdrp (testis development related protein) Rattus norvegicus

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Symbol:

Tdrp

Name:

testis development related protein

RGD ID:

1559733

Description:

Predicted to be involved in spermatogenesis. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Orthologous to human TDRP (testis development related protein); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC498662; LOC498662; similar to RIKEN cDNA 2610019F03; testis development-related protein; uncharacterized protein C8orf42 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TDRP (testis development related protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tdrp (testis development related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tdrp (testis development related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TDRP (testis development related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TDRP (testis development related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tdrp (testis development related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TDRP (testis development related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TDRP (testis development related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tdrp (testis development related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tdrp (testis development related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TDRP (testis development related protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tdrp (testis development related protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-225h24.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tdrp	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tdrp	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	82,326,837 - 82,354,861 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	82,314,220 - 82,354,861 (+)	Ensembl				GRCr8
mRatBN7.2	16	75,624,047 - 75,652,635 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	75,624,907 - 75,652,420 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	80,902,612 - 80,927,563 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	84,356,152 - 84,381,081 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	79,607,927 - 79,635,349 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	80,729,342 - 80,755,397 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	80,729,400 - 80,755,415 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	80,296,522 - 80,322,806 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	80,461,695 - 80,489,957 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	73,436,077 - 73,461,195 (+)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

Benzo[ghi]perylene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

carmustine (ISO)

chlorpyrifos (ISO)

chrysene (ISO)

cobalt dichloride (EXP)

dibutyl phthalate (ISO)

dichloroacetic acid (ISO)

dicrotophos (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

fulvestrant (ISO)

malathion (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dibromide (ISO)

methamphetamine (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

nickel atom (ISO)

niclosamide (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

panobinostat (ISO)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

tetraphene (ISO)

thiram (ISO)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

spermatogenesis (IBA,IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (IBA,ISO)

mitochondrion (ISO)

nucleus (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:20170638	PMID:34800366

Genomics

Comparative Map Data

Tdrp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	82,326,837 - 82,354,861 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	82,314,220 - 82,354,861 (+)	Ensembl				GRCr8
mRatBN7.2	16	75,624,047 - 75,652,635 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	75,624,907 - 75,652,420 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	80,902,612 - 80,927,563 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	84,356,152 - 84,381,081 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	79,607,927 - 79,635,349 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	80,729,342 - 80,755,397 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	80,729,400 - 80,755,415 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	80,296,522 - 80,322,806 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	80,461,695 - 80,489,957 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	73,436,077 - 73,461,195 (+)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

TDRP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	489,946 - 545,780 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	489,803 - 545,781 (-)	Ensembl			hg38	GRCh38
GRCh37	8	439,946 - 495,780 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	431,646 - 485,331 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	409,563 - 463,346 (-)	NCBI		Celera
Cytogenetic Map	8	p23.3	NCBI
HuRef	8	283,774 - 340,290 (-)	NCBI		HuRef
CHM1_1	8	439,499 - 495,469 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	249,159 - 342,875 (-)	NCBI		T2T-CHM13v2.0

Tdrp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	14,002,008 - 14,025,484 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	14,002,008 - 14,025,032 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	13,952,008 - 13,975,478 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	13,952,008 - 13,975,032 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	13,952,008 - 13,974,777 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	13,951,986 - 13,974,667 (-)	NCBI		MGSCv36	mm8
Celera	8	14,112,393 - 14,134,895 (-)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	6.44	NCBI

Tdrp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	58,699,433 - 58,714,475 (+)	Ensembl
ChiLan1.0	NW_004955403	58,694,134 - 58,714,440 (+)	NCBI	ChiLan1.0	ChiLan1.0

TDRP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	15,170,006 - 15,225,493 (-)	NCBI		NHGRI_mPanPan1-v2
Mhudiblu_PPA_v0	8	6,855,274 - 6,911,647 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	404,649 - 417,914 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	404,649 - 409,450 (-)	Ensembl			panPan2	panpan1.1

TDRP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	37,484,952 - 37,525,672 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	37,485,566 - 37,525,726 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	38,085,683 - 38,089,327 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	37,721,006 - 37,761,465 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	37,721,006 - 37,761,418 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	37,664,221 - 37,704,870 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	37,502,230 - 37,542,948 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	37,677,406 - 37,717,838 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tdrp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	133,909 - 137,880 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936615	135,436 - 137,880 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936615	133,602 - 137,880 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TDRP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	32,408,511 - 32,419,636 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	32,415,443 - 32,476,069 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TDRP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	267,302 - 323,918 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	41,906,135 - 41,964,704 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tdrp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624861	202,879 - 225,758 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624861	201,401 - 224,961 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tdrp
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	69,799,477 - 69,822,736 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tdrp
253 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	467
Count of miRNA genes:	242
Interacting mature miRNAs:	301
Transcripts:	ENSRNOT00000036383
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	44455123	89455123	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	59428714	91442908	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	44455123	89455123	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	41992064	86992064	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	59428714	91442908	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	59428714	91442908	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	49099196	91442908	Rat

Markers in Region

RH129427

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	82,353,663 - 82,354,084 (+)	Marker Load Pipeline
mRatBN7.2	16	75,651,437 - 75,651,858 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,754,200 - 80,754,620	NCBI	Rnor6.0
Rnor_5.0	16	80,321,609 - 80,322,029	UniSTS	Rnor5.0
RGSC_v3.4	16	80,488,974 - 80,489,394	UniSTS	RGSC3.4
Celera	16	73,460,212 - 73,460,632	UniSTS
RH 3.4 Map	16	744.4	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

RH130403

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	75,652,062 - 75,652,265 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,754,825 - 80,755,027	NCBI	Rnor6.0
Rnor_5.0	16	80,322,234 - 80,322,436	UniSTS	Rnor5.0
RGSC_v3.4	16	80,489,599 - 80,489,801	UniSTS	RGSC3.4
Celera	16	73,460,837 - 73,461,039	UniSTS
RH 3.4 Map	16	732.1	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

RH126571

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	75,652,182 - 75,652,414 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,754,945 - 80,755,176	NCBI	Rnor6.0
Rnor_5.0	16	80,322,354 - 80,322,585	UniSTS	Rnor5.0
RGSC_v3.4	16	80,489,719 - 80,489,950	UniSTS	RGSC3.4
Celera	16	73,460,957 - 73,461,188	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	68	59	6	332	168	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC100251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000036383 ⟹ ENSRNOP00000028935

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	82,336,205 - 82,354,861 (+)	Ensembl
mRatBN7.2 Ensembl	16	75,624,907 - 75,652,420 (+)	Ensembl
Rnor_6.0 Ensembl	16	80,729,400 - 80,755,182 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082049 ⟹ ENSRNOP00000069082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	82,314,220 - 82,354,861 (+)	Ensembl
mRatBN7.2 Ensembl	16	75,646,396 - 75,652,420 (+)	Ensembl
Rnor_6.0 Ensembl	16	80,729,959 - 80,755,415 (+)	Ensembl

RefSeq Acc Id:

NM_001100791 ⟹ NP_001094261

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	82,327,133 - 82,354,861 (+)	NCBI
mRatBN7.2	16	75,624,909 - 75,652,635 (+)	NCBI
Rnor_6.0	16	80,729,400 - 80,755,183 (+)	NCBI
Rnor_5.0	16	80,296,522 - 80,322,806 (+)	NCBI
RGSC_v3.4	16	80,461,695 - 80,489,957 (+)	RGD
Celera	16	73,436,077 - 73,461,195 (+)	RGD

Sequence:

show sequence

TGGTGATCCAGGATGGACCACGCCCATCGGGCTGGTCCTCCGCACTGTCCCAGCGCCGCGGCCG
GCCGGGCGTCCTCCCTCAGTCCGGGAGCGACGCTGCGCCGAGCGGACAAGCACCCGAGATGTGG
AAGCTGAGCCGAAGTCGAGTGCTTCTGGACGAGCCCCCCGAGGAAGAGGACGTGCTGCGAGGGG
CATCGCCGGCATCAGCAGCCGCTCAGGCGCCGGGGGCAAGCCTCAGAGGTTGGAAAGAAGCAAC
ATCTCTGTTTAATAAAGATGACGAAGAACGCCTGCTCGAGACTTCCAGATCGTCCAAGTCCAAA
GGAACTAACGTACGACTCAAAGAAGAGCTGAAGGCAGAGAAGAAATCGGGATTTTGGGACGCCT
TGGTTTTGAAACAGAATGTTCAGCCTAAAAAGCCAGATCAGATGGAAGGTTGGGAGCCTCCCAA
GCTCACTGCTGAAGACGTGGCCACCGACCATACCGAGGACGGTATAAGCAGCCTCCCACCCTGG
TCTGCCTGGGAGGACGATACCAAGGGCTCTACCAAGTACACCAGCCTCGCCAGCTCAGCCAGCA
GCTCCCGCTGGAGCCTCCGCTCAGCGGGGAAGCTGGTCAGCATCAGGCGACAGAGCAAAGGCCA
CCTGACAGAGACCTGTGAGGAGGTGGAATGAACTGAAGGGGCTTCACAGGGCACCACATTGCTT
TTACGGTCGGCCAAGCCCGCTGGCCGCCTCCTAGTGCACCATTAATTCCTTGAGCCCTCTCCTA
GCCCAGGGAAGGAACCCACTGAGTTGCTTGTGTTTCGTGCTCAGTGACCCACACACACCATGGC
TTCCTGGTGACATCTGGTCGCCTTGCTGCAGAAACGTCCACCCGCTGGGAGCGTGTATGCTGAA
CGGATGTGTGCATTGTAGACACTGTCCTGTGAGCCAGTCTCCTCTAGGGTTCATGCCAGCCTCA
CTCACCTGAGTTTTTAGGACGTCCCCATCTTGTCCCTGCATGAGACATGAGTGCCGCAGCTAAC
TGAACATGGCCTCTGTGGCGCCCTCTCCCTTTGTCAGAAGCAACTCCCAAAGGTTACAGTAACT
CAGTTTAACAACAGATTCATTTTTCCTTATTAAGTTAAAAGCAAAGCAAAGTCTGGATTCTGGA
AGCAAGGTGGTCTGAGGTAGGGAGTCAGGGCATCTTGAGGGCGCATCTGCTTAGGAGGAGTGGT
CTGCAGTGTGGGCCTGGGGCGGCAACTAGTTCTTTTATGGAATTTTATTTTTACCTTTGAACGT
TTAAATACAGATCTTTATTTTCTTCCAGAACGTGTTGATTTTTAAACTTAAAGACGAAAGAAAT
ACTAGGAATAAATTTTGGTCACCCAATAATCTTTGCTCAGAAAACATTAACTTGCTCACTGTAG
AGTTAAACTGTAGATAAAACACTGAAGTGCCTCGTTTCTATTCTTCTCAGATGATTAGTTTTTC
AAAATGAGAAGCTTTTGTGACTGATGTTAAATCTATAAGAAGTGTGTCTCCCCCTACTCTGCCT
GTCTCACACTGCTGACTGTCCTCGGCTGTGGTCCCTGTATGGCTGTCTGCAGCGCACGTGTGTG
TCTTTGCTCTCCAGTTATAGGACTTGGACAGGGGAGCTGTGTTCCTCTCTGTTTTGGTTAAGAA
TTAAAAGCCTCCCGTCAGTCACACTGTCCTTGAGTCACCACAGTGTGAGCACCGTGCTTTGTGT
GCCCTGATGTCCCTCGCAGTGATCCGTGGTAGGGTTGAGTGGCCGGGTTTACTAGATCCACCAC
CCAGCTAGCCAGCCACCTGTCCACCCGTCCACGCATCACTCTGTCTACCCATAAACCGAGCTGT
TAGTCTTGTAAAAATAGAACAGTAAGTTTGCTTAATGAGCTTTGAGAGGAGGGTTCGAATAAAC
AACGTTAACACCTGGAAGTTGTGGAATTATGGAGATTCTGATTCGTAGTGCAAAGTTGTCATTT
TTGCCATAACATGTGAGTTTGAAAACATTTATCCTCAGGTAAATGGTTGAGTGCATGAGCTCTG
ACTCTCTAGTCTTCAAACCGAGGTAACCGCAGGCTAGGACAGAAGAGCAGGCCCATGCTGACGC
CCACCGCAGGAACCCACTGGTGTGTCTGGCTAACCACCTGTGGCGCAGGAAAACAAACCCAGCC
TTGAGAATGTAGGGAACGAGCTCTTGGACACACAGCCTCTGTCTGTGTTCACTGGGCCTGCGCT
GAGTGCCTATAGCTCACTGTGCCCGTGTGCCTGAGACGCAGTGTTGCGTGTTGACACGGGGACC
TTTACCCCGTCCGTCGCCTCTCAGGAGGTGAAAATGCACTGTAAACCAGAAAGAGTAATTAAAA
ATAATTTTTCCTTCTGTTGTATCAGATTAAAATATCTTGCGTTTGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006253399 ⟹ XP_006253461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	82,327,142 - 82,354,861 (+)	NCBI
mRatBN7.2	16	75,624,918 - 75,652,635 (+)	NCBI
Rnor_6.0	16	80,729,413 - 80,755,397 (+)	NCBI
Rnor_5.0	16	80,296,522 - 80,322,806 (+)	NCBI

Sequence:

show sequence

TGGACCACGCCCATCGGGCTGGGTGAGCGGTGGGCCGGGAGTTGAGGGGCCGCCGGTGTGAAAT
GTCACGTGGGTTTTGTGCGCCCGGGTTCTTGGTCCCTCGTCCTCCGCACTGTCCCAGCGCCGCG
GCCGGCCGGGCGTCCTCCCTCAGTCCGGGAGCGACGCTGCGCCGAGCGGACAAGCACCCGAGAT
GTGGAAGCTGAGCCGAAGTCGAGTGCTTCTGGACGAGCCCCCCGAGGAAGAGGACGTGCTGCGA
GGGGCATCGCCGGCATCAGCAGCCGCTCAGGCGCCGGTGAGGACACGCGTGGGGGCGCAGGGGG
CAAGCCTCAGAGGTTGGAAAGAAGCAACATCTCTGTTTAATAAAGATGACGAAGAACGCCTGCT
CGAGACTTCCAGATCGTCCAAGTCCAAAGGAACTAACGTACGACTCAAAGAAGAGCTGAAGGCA
GAGAAGAAATCGGGATTTTGGGACGCCTTGGTTTTGAAACAGAATGTTCAGCCTAAAAAGCCAG
ATCAGATGGAAGGTTGGGAGCCTCCCAAGCTCACTGCTGAAGACGTGGCCACCGACCATACCGA
GGACGGTATAAGCAGCCTCCCACCCTGGTCTGCCTGGGAGGACGATACCAAGGGCTCTACCAAG
TACACCAGCCTCGCCAGCTCAGCCAGCAGCTCCCGCTGGAGCCTCCGCTCAGCGGGGAAGCTGG
TCAGCATCAGGCGACAGAGCAAAGGCCACCTGACAGAGACCTGTGAGGAGGTGGAATGAACTGA
AGGGGCTTCACAGGGCACCACATTGCTTTTACGGTCGGCCAAGCCCGCTGGCCGCCTCCTAGTG
CACCATTAATTCCTTGAGCCCTCTCCTAGCCCAGGGAAGGAACCCACTGAGTTGCTTGTGTTTC
GTGCTCAGTGACCCACACACACCATGGCTTCCTGGTGACATCTGGTCGCCTTGCTGCAGAAACG
TCCACCCGCTGGGAGCGTGTATGCTGAACGGATGTGTGCATTGTAGACACTGTCCTGTGAGCCA
GTCTCCTCTAGGGTTCATGCCAGCCTCACTCACCTGAGTTTTTAGGACGTCCCCATCTTGTCCC
TGCATGAGACATGAGTGCCGCAGCTAACTGAACATGGCCTCTGTGGCGCCCTCTCCCTTTGTCA
GAAGCAACTCCCAAAGGTTACAGTAACTCAGTTTAACAACAGATTCATTTTTCCTTATTAAGTT
AAAAGCAAAGCAAAGTCTGGATTCTGGAAGCAAGGTGGTCTGAGGTAGGGAGTCAGGGCATCTT
GAGGGCGCATCTGCTTAGGAGGAGTGGTCTGCAGTGTGGGCCTGGGGCGGCAACTAGTTCTTTT
ATGGAATTTTATTTTTACCTTTGAACGTTTAAATACAGATCTTTATTTTCTTCCAGAACGTGTT
GATTTTTAAACTTAAAGACGAAAGAAATACTAGGAATAAATTTTGGTCACCCAATAATCTTTGC
TCAGAAAACATTAACTTGCTCACTGTAGAGTTAAACTGTAGATAAAACACTGAAGTGCCTCGTT
TCTATTCTTCTCAGATGATTAGTTTTTCAAAATGAGAAGCTTTTGTGACTGATGTTAAATCTAT
AAGAAGTGTGTCTCCCCCTACTCTGCCTGTCTCACACTGCTGACTGTCCTCGGCTGTGGTCCCT
GTATGGCTGTCTGCAGCGCACGTGTGTGTCTTTGCTCTCCAGTTATAGGACTTGGACAGGGGAG
CTGTGTTCCTCTCTGTTTTGGTTAAGAATTAAAAGCCTCCCGTCAGTCACACTGTCCTTGAGTC
ACCACAGTGTGAGCACCGTGCTTTGTGTGCCCTGATGTCCCTCGCAGTGATCCGTGGTAGGGTT
GAGTGGCCGGGTTTACTAGATCCACCACCCAGCTAGCCAGCCACCTGTCCACCCGTCCACGCAT
CACTCTGTCTACCCATAAACCGAGCTGTTAGTCTTGTAAAAATAGAACAGTAAGTTTGCTTAAT
GAGCTTTGAGAGGAGGGTTCGAATAAACAACGTTAACACCTGGAAGTTGTGGAATTATGGAGAT
TCTGATTCGTAGTGCAAAGTTGTCATTTTTGCCATAACATGTGAGTTTGAAAACATTTATCCTC
AGGTAAATGGTTGAGTGCATGAGCTCTGACTCTCTAGTCTTCAAACCGAGGTAACCGCAGGCTA
GGACAGAAGAGCAGGCCCATGCTGACGCCCACCGCAGGAACCCACTGGTGTGTCTGGCTAACCA
CCTGTGGCGCAGGAAAACAAACCCAGCCTTGAGAATGTAGGGAACGAGCTCTTGGACACACAGC
CTCTGTCTGTGTTCACTGGGCCTGCGCTGAGTGCCTATAGCTCACTGTGCCCGTGTGCCTGAGA
CGCAGTGTTGCGTGTTGACACGGGGACCTTTACCCCGTCCGTCGCCTCTCAGGAGGTGAAAATG
CACTGTAAACCAGAAAGAGTAATTAAAAATAATTTTTCCTTCTGTTGTATCAGATTAAAATATC
TTGCGTTTGAGACCTTTAGCGTGTATATTTATTGGTATGCTTCCAGGAGAACGTCTCTTCAAAG
GCTTCACATGAACGTGCTCTGCTCAGATGCAGTTCGCGATGTCGCCGTGATTCTGGGGCCGGCA
GAGGGGACCCAATGTCTGTACCTAGAACTCTGTTCTGTGCTTTTCCGGGAGGGGCAGAGTCTTC
CTTAAAGCTAAGGATTAAAGAAAATAAAAGAA

hide sequence

RefSeq Acc Id:

XM_063275650 ⟹ XP_063131720

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	82,326,837 - 82,354,861 (+)	NCBI

RefSeq Acc Id:

XM_063275651 ⟹ XP_063131721

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	82,327,142 - 82,354,861 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094261	(Get FASTA)	NCBI Sequence Viewer
	XP_006253461	(Get FASTA)	NCBI Sequence Viewer
	XP_063131720	(Get FASTA)	NCBI Sequence Viewer
	XP_063131721	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI00252	(Get FASTA)	NCBI Sequence Viewer
	AAI68702	(Get FASTA)	NCBI Sequence Viewer
	EDM08922	(Get FASTA)	NCBI Sequence Viewer
	EDM08923	(Get FASTA)	NCBI Sequence Viewer
	EDM08924	(Get FASTA)	NCBI Sequence Viewer
	EDM08925	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069082
GenBank Protein	Q498E2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001094261 ⟸ NM_001100791
- UniProtKB:	Q498E2 (UniProtKB/Swiss-Prot), B5DEK3 (UniProtKB/TrEMBL), A0A8L2UPG2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWKLSRSRVLLDEPPEEEDVLRGASPASAAAQAPGASLRGWKEATSLFNKDDEERLLETSRSSK SKGTNVRLKEELKAEKKSGFWDALVLKQNVQPKKPDQMEGWEPPKLTAEDVATDHTEDGISSLP PWSAWEDDTKGSTKYTSLASSASSSRWSLRSAGKLVSIRRQSKGHLTETCEEVE hide sequence

RefSeq Acc Id:	XP_006253461 ⟸ XM_006253399
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2QFM2 (UniProtKB/TrEMBL), A6IWE7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWKLSRSRVLLDEPPEEEDVLRGASPASAAAQAPVRTRVGAQGASLRGWKEATSLFNKDDEERL LETSRSSKSKGTNVRLKEELKAEKKSGFWDALVLKQNVQPKKPDQMEGWEPPKLTAEDVATDHT EDGISSLPPWSAWEDDTKGSTKYTSLASSASSSRWSLRSAGKLVSIRRQSKGHLTETCEEVE hide sequence

Ensembl Acc Id:

ENSRNOP00000069082 ⟸ ENSRNOT00000082049

Ensembl Acc Id:

ENSRNOP00000028935 ⟸ ENSRNOT00000036383

RefSeq Acc Id:	XP_063131720 ⟸ XM_063275650
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063131721 ⟸ XM_063275651
- Peptide Label:	isoform X3
- UniProtKB:	Q498E2 (UniProtKB/Swiss-Prot), B5DEK3 (UniProtKB/TrEMBL), A0A8L2UPG2 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q498E2-F1-model_v2	AlphaFold	Q498E2	1-182	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700220

Promoter ID:

EPDNEW_R10744

Type:

initiation region

Name:

Tdrp_2

Description:

testis development related protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R10745

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	80,729,419 - 80,729,479	EPDNEW

RGD ID:

13700229

Promoter ID:

EPDNEW_R10745

Type:

initiation region

Name:

Tdrp_1

Description:

testis development related protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R10744

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	80,730,000 - 80,730,060	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559733	AgrOrtholog
BioCyc Gene	G2FUF-10740	BioCyc
Ensembl Genes	ENSRNOG00000027245	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000082049	ENTREZGENE
IMAGE_CLONE	IMAGE:7454791	IMAGE-MGC_LOAD
InterPro	TDRP	UniProtKB/Swiss-Prot
KEGG Report	rno:498662	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116164	IMAGE-MGC_LOAD
NCBI Gene	498662	ENTREZGENE
PANTHER	TESTIS DEVELOPMENT-RELATED PROTEIN	UniProtKB/Swiss-Prot
	TESTIS DEVELOPMENT-RELATED PROTEIN-RELATED	UniProtKB/Swiss-Prot
Pfam	TDRP	UniProtKB/Swiss-Prot
PhenoGen	Tdrp	PhenoGen
RatGTEx	ENSRNOG00000027245	RatGTEx
UniProt	A0A8L2QFM2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UPG2	ENTREZGENE, UniProtKB/TrEMBL
	A6IWE7	ENTREZGENE, UniProtKB/TrEMBL
	B5DEK3	ENTREZGENE, UniProtKB/TrEMBL
	Q498E2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-06-14	Tdrp	testis development related protein	LOC498662	similar to RIKEN cDNA 2610019F03	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC498662	similar to RIKEN cDNA 2610019F03			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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