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Gene: Fmc1 (formation of mitochondrial complex V assembly factor 1) Rattus norvegicus

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Symbol:

Fmc1

Name:

formation of mitochondrial complex V assembly factor 1

RGD ID:

1559476

Description:

Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within several processes, including dopaminergic neuron differentiation; motor behavior; and regulation of type B pancreatic cell proliferation. Predicted to be active in mitochondrion. Orthologous to several human genes including FMC1 (formation of mitochondrial complex V assembly factor 1 homolog); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

formation of mitochondrial complex V assembly factor 1 homolog; formation of mitochondrial complexes 1 homolog; formation of mitochondrial complexes 1 homolog (S. cerevisiae); MGC112899; similar to RIKEN cDNA 1110001J03; UPF0562 protein C7orf55 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	68,241,009 - 68,249,045 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	68,241,009 - 68,268,534 (+)	Ensembl				GRCr8
mRatBN7.2	4	67,274,104 - 67,282,140 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	67,274,104 - 67,282,140 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	72,215,566 - 72,223,586 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	68,136,667 - 68,144,687 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	66,534,515 - 66,542,606 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	66,276,835 - 66,284,868 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	66,276,835 - 66,284,868 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	66,088,284 - 66,096,317 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	66,107,930 - 66,115,963 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	62,291,732 - 62,299,820 (+)	NCBI		Celera
Cytogenetic Map	4	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Parkinson's Disease, Mitochondrial (ISO)

secondary Parkinson disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

acetamide (EXP)

bafilomycin A1 (ISO)

beauvericin (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

CCCP (ISO)

CGP 52608 (ISO)

cisplatin (EXP,ISO)

clobetasol (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

enniatin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

Mesaconitine (EXP)

N-methyl-4-phenylpyridinium (ISO)

nitrates (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

quercetin (ISO)

rotenone (ISO)

SB 431542 (ISO)

sulfasalazine (ISO)

temozolomide (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

tolcapone (EXP)

toluene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic mitochondrial changes (ISO)

dopaminergic neuron differentiation (ISO)

mitochondrial proton-transporting ATP synthase complex assembly (IEA,ISO,ISS)

mitochondrion organization (ISO)

motor behavior (ISO)

negative regulation of lipid catabolic process (ISO)

regulation of type B pancreatic cell proliferation (ISO)

response to toxic substance (ISO)

Cellular Component

mitochondrion (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:18614015	PMID:25912136	PMID:28719601

Genomics

Comparative Map Data

Fmc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	68,241,009 - 68,249,045 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	68,241,009 - 68,268,534 (+)	Ensembl				GRCr8
mRatBN7.2	4	67,274,104 - 67,282,140 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	67,274,104 - 67,282,140 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	72,215,566 - 72,223,586 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	68,136,667 - 68,144,687 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	66,534,515 - 66,542,606 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	66,276,835 - 66,284,868 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	66,276,835 - 66,284,868 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	66,088,284 - 66,096,317 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	66,107,930 - 66,115,963 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	62,291,732 - 62,299,820 (+)	NCBI		Celera
Cytogenetic Map	4	q23	NCBI

FMC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	139,340,472 - 139,346,328 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	139,339,457 - 139,346,328 (+)	Ensembl			hg38	GRCh38
GRCh37	7	139,025,218 - 139,031,074 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	138,676,615 - 138,681,605 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	133,764,065 - 133,768,709 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI
HuRef	7	133,335,079 - 133,340,948 (+)	NCBI		HuRef
CHM1_1	7	138,958,933 - 138,964,811 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	140,653,753 - 140,659,609 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	138,369,767 - 138,375,635 (+)	NCBI

Fmc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	38,511,796 - 38,516,384 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	38,510,437 - 38,516,384 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	38,534,861 - 38,539,449 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	38,533,502 - 38,539,449 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	38,484,861 - 38,489,449 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	38,464,469 - 38,469,057 (+)	NCBI		MGSCv36	mm8
Celera	6	38,515,810 - 38,520,398 (+)	NCBI		Celera
Cytogenetic Map	6	B1	NCBI
cM Map	6	17.84	NCBI

Fmc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955494	3,722,519 - 3,728,622 (-)	Ensembl
ChiLan1.0	NW_004955494	3,722,359 - 3,730,217 (-)	NCBI	ChiLan1.0	ChiLan1.0

FMC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	176,143,873 - 176,149,116 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	28,153,686 - 28,161,435 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	131,289,119 - 131,295,330 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	143,773,794 - 143,778,431 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

FMC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	9,413,358 - 9,418,791 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	9,413,359 - 9,418,791 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	10,255,427 - 10,260,859 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	9,332,934 - 9,338,367 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	9,328,706 - 9,337,749 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	9,283,433 - 9,288,867 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	9,127,378 - 9,132,811 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	9,198,532 - 9,203,965 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

FMC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	10,346,032 - 10,350,339 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	18	10,346,029 - 10,350,372 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	10,742,530 - 10,746,881 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FMC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	108,087,824 - 108,092,337 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	108,087,781 - 108,092,384 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666072	4,913,729 - 4,918,730 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fmc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	19,768,212 - 19,771,138 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624765	19,767,361 - 19,784,527 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fmc1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	101,256,229 - 101,264,057 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fmc1
32 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	406
Count of miRNA genes:	241
Interacting mature miRNAs:	282
Transcripts:	ENSRNOT00000007544
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
5685012	Bmd87	Bone mineral density QTL 87	5.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	4	35113290	80113290	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	59753119	104753119	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	41400577	86400577	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	57613242	102613242	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	40490442	75726188	Rat
634311	Sach7	Saccharin preference QTL 7			taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	58079875	82597589	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	58817672	103817672	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
61336	Bp21	Blood pressure QTL 21	4.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58080146	80212111	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	59836842	104836842	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	37269577	82269577	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	61041057	94638356	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	40471453	75939996	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	41400603	86400603	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	30448961	82336920	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	64209744	109209744	Rat
2317577	Eae24	Experimental allergic encephalomyelitis QTL 24			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	4	67960112	73752811	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	41400577	86400577	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58079875	92690793	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63224393	108224393	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	63900458	88813920	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	57613242	102613242	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	57613242	102613242	Rat
631671	Iddm11	Insulin dependent diabetes mellitus QTL 11	3.6	0.0012	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	59603319	80216952	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	355	191	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC098843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007544 ⟹ ENSRNOP00000007544

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	68,241,009 - 68,249,045 (+)	Ensembl
mRatBN7.2 Ensembl	4	67,274,104 - 67,282,140 (+)	Ensembl
Rnor_6.0 Ensembl	4	66,276,835 - 66,284,868 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167526 ⟹ ENSRNOP00000099566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	68,241,009 - 68,268,534 (+)	Ensembl

RefSeq Acc Id:

NM_001037795 ⟹ NP_001032884

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	68,241,009 - 68,249,045 (+)	NCBI
mRatBN7.2	4	67,274,104 - 67,282,140 (+)	NCBI
Rnor_6.0	4	66,276,835 - 66,284,868 (+)	NCBI
Rnor_5.0	4	66,088,284 - 66,096,317 (+)	NCBI
RGSC_v3.4	4	66,107,930 - 66,115,963 (+)	RGD
Celera	4	62,291,732 - 62,299,820 (+)	RGD

Sequence:

show sequence

GCGAGGGCGCCAGAGGCTGTTAGGGACCAGGTTCGCCAAGGACAGGAAAATGGCGGCCTTGGGG
TCGCCGGCGCGCACTCTGCGAGGCCTTCTGCGGGAGCTGCGCTACCTGAACGCGGCCACCGGGC
GACCATACCGCGACACAGCAGCCTACCGGTACCTGGTTAAGGCTTTCCGAGCACATCGGGTCAC
CAGTGAGAAGTTGTGCAGAGCCCAACACGAGCTTCACTTCCAAGCTGCCACCTATCTCTGCCTC
TTGCGTAGTATCCGGCAACATGTAGCCCTTCATCAGGAATTTCATGGCAAGGGTGAGCGCTCAG
TGGAGGAGTCTGCTGGTTTGGTGGGCCTCCAGTTGCCCCATCAGCCTGGAGGGAAGGGCTGGGA
GCCATGATGCAGAAAGTCCTCAGATGTTTCTTCATTCAAGAATTTAACCATTTCTACCAATATG
TATTTATCATTAAATCTTTTTTAAAGTGTAGTTTTGGTTTTTGTTTGCTTTTCTGTGTTTTTTG
TTGACTGAATAGTTAGGGAAATAAAATTGAAGTGAATCTGCTGAACTTTTTAACATTGGGTTCA
CTGATGTTCTTAAAGATTTATTTATTGTATATAAATACACTGTAGCTGTCTTCAGACACCCCAG
AAGAGGGCATCAGATCTTATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACT
CAGGACCTCAGGAAGAGCAGTCAGTGCTCTTACCACTGATCCATCTCTCCAGCCCTCATTGATG
TTATGTGTCAGTGCTCTTGCACATGAAGGTTCATGTGGAGACCAGAGTTTGGCAAAGGGATGCC
TTTCTCAAGTACTTCTCTGCCTTGTTTCTTGACAGTGTCTCTCACTGAACTTGGAGCTCACTGT
TTTGGGTTCAGTGACTAACTAGGAAGTGTCCAGGATCTATTTGTCTTGGCTCTCCAGCTCTGGG
GTTAGAAACATGAACTGCAGTGACTATGTATGTGGGTGTTTGGGATTCAAACTCAGGCCCTTAC
GTGTGCACACTGTATCCAGTGAGCCTGCTCCCTAGTCCCTGATGTATTTGACTTAACTTTTAAA
ACTTAGGGCTTTTGTTGTTGTTGGTTTTGGTCATAAATGGAGAGATGGGCTTAGTGGTCAAGTG
TGTGTGTGTTACTCTTGCAGAGGTTCTGAGGTTGGTTTCCAGCACCCATGTCAGGTAGCTAACA
ACCATCTTTTGTAACTTGTTACAGAGATCCCAGACCTCTAGTCTGTACAGGTACCTACACTCAT
GTGCACATACATATATACATATACATAATTAAAAATAAAATTTTGTTTTGCTGTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001032884	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98843	(Get FASTA)	NCBI Sequence Viewer
	EDM15362	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007544
	ENSRNOP00000007544.2
GenBank Protein	Q4G012	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001032884 ⟸ NM_001037795
- UniProtKB:	Q4G012 (UniProtKB/Swiss-Prot), A6IES4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAALGSPARTLRGLLRELRYLNAATGRPYRDTAAYRYLVKAFRAHRVTSEKLCRAQHELHFQAA TYLCLLRSIRQHVALHQEFHGKGERSVEESAGLVGLQLPHQPGGKGWEP hide sequence

Ensembl Acc Id:

ENSRNOP00000007544 ⟸ ENSRNOT00000007544

Ensembl Acc Id:

ENSRNOP00000099566 ⟸ ENSRNOT00000167526

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4G012-F1-model_v2	AlphaFold	Q4G012	1-113	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692973

Promoter ID:

EPDNEW_R3497

Type:

multiple initiation site

Name:

Fmc1_1

Description:

formation of mitochondrial complex V assembly factor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	66,276,863 - 66,276,923	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559476	AgrOrtholog
BioCyc Gene	G2FUF-45208	BioCyc
Ensembl Genes	ENSRNOG00000005618	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007544	ENTREZGENE
	ENSRNOT00000007544.4	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7379283	IMAGE-MGC_LOAD
InterPro	FMC1_homologue	UniProtKB/Swiss-Prot
KEGG Report	rno:500087	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:112899	IMAGE-MGC_LOAD
NCBI Gene	500087	ENTREZGENE
PANTHER	PROTEIN FMC1 HOMOLOG	UniProtKB/Swiss-Prot
	PTHR31716	UniProtKB/Swiss-Prot
Pfam	Complex1_LYR_2	UniProtKB/Swiss-Prot
PhenoGen	Fmc1	PhenoGen
RatGTEx	ENSRNOG00000005618	RatGTEx
UniProt	A0ABK0LAB5_RAT	UniProtKB/TrEMBL
	A6IES4	ENTREZGENE, UniProtKB/TrEMBL
	FMC1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-22	Fmc1	formation of mitochondrial complex V assembly factor 1	Fmc1	formation of mitochondrial complexes 1 homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-11-11	Fmc1	formation of mitochondrial complexes 1 homolog (S. cerevisiae)	MGC112899	similar to RIKEN cDNA 1110001J03	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	MGC112899	similar to RIKEN cDNA 1110001J03			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD