Advanced Search (OLGA)

Gene: Ociad1 (OCIA domain containing 1) Rattus norvegicus

Analyze

Symbol:

Ociad1

Name:

OCIA domain containing 1

RGD ID:

1359549

Description:

Predicted to be involved in regulation of stem cell differentiation. Predicted to be active in endosome. Orthologous to human OCIAD1 (OCIA domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

OCIA domain-containing protein 1; ovarian carcinoma immunoreactive antigen

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OCIAD1 (OCIA domain containing 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ociad1 (OCIA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ociad1 (OCIA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OCIAD1 (OCIA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OCIAD1 (OCIA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ociad1 (OCIA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OCIAD1 (OCIA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OCIAD1 (OCIA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ociad1 (OCIA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ociad1 (OCIA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	OCIAD1 (OCIA domain containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ociad1 (OCIA domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ociad1 (OCIA domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ociad1 (OCIA domain containing 1)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	asrij	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ociad1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ociad1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	35,251,891 - 35,269,440 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	35,251,333 - 35,269,283 (-)	Ensembl				GRCr8
mRatBN7.2	14	34,897,851 - 34,915,291 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	34,897,847 - 34,915,286 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	35,262,363 - 35,279,725 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	36,567,122 - 36,584,484 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	35,055,447 - 35,072,810 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	37,458,023 - 37,475,485 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	37,458,029 - 37,475,418 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	37,276,455 - 37,293,910 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	37,301,310 - 37,318,693 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	34,156,121 - 34,173,877 (-)	NCBI		Celera
RGSC_v3.1	14	37,303,745 - 37,321,128 (-)	NCBI
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

acrolein (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (EXP)

caffeine (ISO)

chloropicrin (ISO)

corosolic acid (ISO)

crocidolite asbestos (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fipronil (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

ketoconazole (ISO)

lithium atom (ISO)

lithium hydride (ISO)

Mesaconitine (EXP)

methidathion (ISO)

methylparaben (ISO)

nitrates (ISO)

ozone (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

testosterone (ISO)

theophylline (ISO)

thimerosal (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of stem cell differentiation (IEA,ISO,ISS)

Cellular Component

endosome (IBA,IEA,ISO,ISS)

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Embryonic stem cell and tissue-specific expression of a novel conserved gene, asrij.	Mukhopadhyay A, etal., Dev Dyn 2003 Aug;227(4):578-86.
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:18614015	PMID:19946888	PMID:23972987	PMID:34800366

Genomics

Comparative Map Data

Ociad1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	35,251,891 - 35,269,440 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	35,251,333 - 35,269,283 (-)	Ensembl				GRCr8
mRatBN7.2	14	34,897,851 - 34,915,291 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	34,897,847 - 34,915,286 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	35,262,363 - 35,279,725 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	36,567,122 - 36,584,484 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	35,055,447 - 35,072,810 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	37,458,023 - 37,475,485 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	37,458,029 - 37,475,418 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	37,276,455 - 37,293,910 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	37,301,310 - 37,318,693 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	34,156,121 - 34,173,877 (-)	NCBI		Celera
RGSC_v3.1	14	37,303,745 - 37,321,128 (-)	NCBI
Cytogenetic Map	14	p11	NCBI

OCIAD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	48,805,156 - 48,861,815 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	48,805,141 - 48,862,342 (+)	Ensembl			hg38	GRCh38
GRCh37	4	48,833,105 - 48,863,832 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	48,527,772 - 48,558,589 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	48,674,032 - 48,704,191	NCBI
Celera	4	49,281,441 - 49,312,217 (+)	NCBI		Celera
Cytogenetic Map	4	p11	NCBI
HuRef	4	48,152,833 - 48,183,618 (+)	NCBI		HuRef
CHM1_1	4	48,832,196 - 48,862,985 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	48,797,241 - 48,828,402 (+)	NCBI		T2T-CHM13v2.0

Ociad1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	73,450,093 - 73,471,420 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	73,450,127 - 73,471,412 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	73,292,769 - 73,314,077 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	73,292,784 - 73,314,069 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	73,684,033 - 73,705,316 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	73,571,959 - 73,593,219 (+)	NCBI		MGSCv36	mm8
Celera	5	70,547,592 - 70,568,648 (+)	NCBI		Celera
Cytogenetic Map	5	C3.2	NCBI
cM Map	5	38.44	NCBI

Ociad1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955447	18,844,270 - 18,870,368 (-)	Ensembl
ChiLan1.0	NW_004955447	18,844,270 - 18,870,368 (-)	NCBI	ChiLan1.0	ChiLan1.0

OCIAD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	79,004,731 - 79,034,657 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	79,266,388 - 79,296,271 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	73,293,733 - 73,323,889 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	84,022,714 - 84,052,802 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	84,022,716 - 84,052,739 (-)	Ensembl			panPan2	panpan1.1

OCIAD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	44,608,474 - 44,634,665 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	44,565,044 - 44,634,263 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	44,560,897 - 44,587,081 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	45,211,167 - 45,237,366 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	45,211,132 - 45,237,484 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	44,886,280 - 44,912,850 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	44,421,306 - 44,447,489 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	45,300,618 - 45,326,814 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ociad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	31,492,528 - 31,517,951 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	14,780,326 - 14,807,182 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	14,780,284 - 14,805,718 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OCIAD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	38,745,338 - 38,769,253 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	38,745,415 - 38,769,255 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	40,854,812 - 40,876,447 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OCIAD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	1,394,512 - 1,424,286 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	1,391,852 - 1,424,270 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	47,384,844 - 47,414,633 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ociad1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624761	18,144,270 - 18,171,205 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ociad1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	30,098,512 - 30,115,782 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ociad1
83 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	137
Count of miRNA genes:	107
Interacting mature miRNAs:	118
Transcripts:	ENSRNOT00000002996
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631528	Scl11	Serum cholesterol level QTL 11	4.9		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	14	17875645	36079022	Rat
7411573	Bw139	Body weight QTL 139	4.7	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	14	1	40068101	Rat
9589814	Gluco67	Glucose level QTL 67	4.54	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	40068101	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9393298	39411170	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	31238080	72970315	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30674469	85041098	Rat
2324617	Coatc2	Coat color QTL 2		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	14	31121333	39507682	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	33424686	102238540	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18915454	42433608	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22521517	67521517	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18895192	63895192	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17906726	54251504	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41415516	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat

Markers in Region

AW557942

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	34,897,899 - 34,898,008 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	37,458,072 - 37,458,180	NCBI	Rnor6.0
Rnor_5.0	14	37,276,504 - 37,276,612	UniSTS	Rnor5.0
RGSC_v3.4	14	37,301,354 - 37,301,462	UniSTS	RGSC3.4
Celera	14	34,156,165 - 34,156,273	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH132629

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	34,897,876 - 34,898,067 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	37,458,049 - 37,458,239	NCBI	Rnor6.0
Rnor_5.0	14	37,276,481 - 37,276,671	UniSTS	Rnor5.0
RGSC_v3.4	14	37,301,331 - 37,301,521	UniSTS	RGSC3.4
Celera	14	34,156,142 - 34,156,332	UniSTS
Cytogenetic Map	14	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002996 ⟹ ENSRNOP00000002996

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	35,251,892 - 35,269,274 (-)	Ensembl
mRatBN7.2 Ensembl	14	34,897,870 - 34,915,286 (-)	Ensembl
Rnor_6.0 Ensembl	14	37,458,029 - 37,475,418 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094276 ⟹ ENSRNOP00000097451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	35,254,842 - 35,269,283 (-)	Ensembl
mRatBN7.2 Ensembl	14	34,900,807 - 34,915,276 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108569 ⟹ ENSRNOP00000083306

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	35,252,372 - 35,269,283 (-)	Ensembl
mRatBN7.2 Ensembl	14	34,897,907 - 34,914,927 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114537 ⟹ ENSRNOP00000079989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	35,251,333 - 35,267,782 (-)	Ensembl
mRatBN7.2 Ensembl	14	34,897,847 - 34,913,747 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119596 ⟹ ENSRNOP00000080906

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	35,252,338 - 35,267,782 (-)	Ensembl
mRatBN7.2 Ensembl	14	34,898,303 - 34,913,747 (-)	Ensembl

RefSeq Acc Id:

NM_001013874 ⟹ NP_001013896

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	35,251,891 - 35,269,274 (-)	NCBI
mRatBN7.2	14	34,897,856 - 34,915,239 (-)	NCBI
Rnor_6.0	14	37,458,028 - 37,475,418 (-)	NCBI
Rnor_5.0	14	37,276,455 - 37,293,910 (-)	NCBI
RGSC_v3.4	14	37,301,310 - 37,318,693 (-)	RGD
Celera	14	34,156,121 - 34,173,877 (-)	RGD

Sequence:

show sequence

GCTGGCGCTTGTGTCTAGGTGACATCTTGGCGAGCCCTTTGAAGCTGCCCTCTTTCCCCTCCCC
GTTTCCCGCGTTGTCCTCCGTGCCTGTCTTTGGGGTCCTCTCCTGGCCTGTACCCCGGGTCTTG
CTCCCCGCGTTGCCGCCTCCTTCGTGAGGAACTATGAATGGGAGGGCAGATTTTCGGGAGCCGA
ATGCACAAGTGTCAAGACCAATTCCTGACATAGGGGGCGGCTACATTCCAACAGAAGAAGAGTG
GAGGCTCTTTGCAGAGTGCCATGAAGAGTGCTTCTGGTTCAGATCTGTGCCGTTGGCTGCTACA
AGTATGTTGATTACTCAAGGACTAATCAGTAAAGGAATACTGTCAAGTCATCCAAAATATGGTT
CCATTCCTAAACTTATATTTGCTTGTATCGTGGGATACTTTGCTGGAAAGCTTTCTTATGTGAA
AACTTGCCAAGAAAAGTTCAAGAAGCTTGAAAATTCTCCCCTTGGAGAAGCACTGCGGTCAGGC
GAGTTGCGGCGCTCTTTGCCACCTGGGCACTATACTCAAAAGCCTAAATATGACTCAAATGTGA
GTGGTCAGTCCTCCTTTGGGACATCTCCAGCAGCAGACAACATAGAAAAGGAGACGCTTCCTCG
TTACGAGCCAATTCCATTTAGTGCTTCTATGAATGAATCCACTCCCACTGGTATTACTGACCAT
ATTGCCCAAGGACCTGATCCCAACCTTGAAGACAGTCCCAAAAGGAAAAGTGTTACATATGAGG
AGTTAAGGAATAAGAACAGAGAGTCATATGGAGTAACCCTGTCACACAAGACTGACCCCTCAGT
CAGGCCTATGCAGGAAAGAGGGCCCCAAAAAGAAGTCAAAGTAAACAAATATGGAGATACTTGG
GACGAGTGAAAGACTCCGCCATTGGACCTACTGAAGGCCTTCCATATCCAGCTTCATCAGGTGG
TCGTGTGTCCTACATGCTTGGACTCAGCAGCAGATTTCATAAATACATTTAAAACGAAATCCTG
GTTTGTGTGATTTAACAATGCTTTACGGACTCAGATTTTAATGTTTACTATGGTGTAGATGTAC
CAACCTGGTCGCCGAGAATGGTGATACTCTGCCATAGTTGCGTGCACTCGGTGAAATTGTTTCT
GCTACAGGAGACAGACTCATGAAACTCGACTGTGACTCTTGATCAGCCCATGTGACGATAGCTG
CATGCTGAAGGGGGGGTGGGGGGAGCGAGCACATGCCCAGGGTTCCGCTTCGCATCAGTTATTA
AAAGGCCTTTCTCCAGCATTTACTCGAGCATCTTAGTGTCTGTGGTGAATAAAGTGTACACACA
GTGAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039091697 ⟹ XP_038947625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	35,251,891 - 35,269,440 (-)	NCBI
mRatBN7.2	14	34,897,851 - 34,915,286 (-)	NCBI

RefSeq Acc Id:

XM_039091700 ⟹ XP_038947628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	35,255,383 - 35,269,440 (-)	NCBI
mRatBN7.2	14	34,901,368 - 34,915,286 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013896	(Get FASTA)	NCBI Sequence Viewer
	XP_038947625	(Get FASTA)	NCBI Sequence Viewer
	XP_038947628	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83718	(Get FASTA)	NCBI Sequence Viewer
	EDL89962	(Get FASTA)	NCBI Sequence Viewer
	EDL89963	(Get FASTA)	NCBI Sequence Viewer
	EDL89964	(Get FASTA)	NCBI Sequence Viewer
	EDL89965	(Get FASTA)	NCBI Sequence Viewer
	EDL89966	(Get FASTA)	NCBI Sequence Viewer
	EDL89967	(Get FASTA)	NCBI Sequence Viewer
	EDL89968	(Get FASTA)	NCBI Sequence Viewer
	EDL89969	(Get FASTA)	NCBI Sequence Viewer
	EDL89970	(Get FASTA)	NCBI Sequence Viewer
	EDL89971	(Get FASTA)	NCBI Sequence Viewer
	EDL89972	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002996
	ENSRNOP00000079989
GenBank Protein	Q5XIG4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013896 ⟸ NM_001013874

- UniProtKB:

Q5XIG4 (UniProtKB/Swiss-Prot), A0A8L2Q028 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNGRADFREPNAQVSRPIPDIGGGYIPTEEEWRLFAECHEECFWFRSVPLAATSMLITQGLISK
GILSSHPKYGSIPKLIFACIVGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGELRRSLPPGHY
TQKPKYDSNVSGQSSFGTSPAADNIEKETLPRYEPIPFSASMNESTPTGITDHIAQGPDPNLED
SPKRKSVTYEELRNKNRESYGVTLSHKTDPSVRPMQERGPQKEVKVNKYGDTWDE

hide sequence

Ensembl Acc Id:

ENSRNOP00000002996 ⟸ ENSRNOT00000002996

RefSeq Acc Id:	XP_038947625 ⟸ XM_039091697
- Peptide Label:	isoform X1
- UniProtKB:	A6JD40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947628 ⟸ XM_039091700
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZNM9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000083306 ⟸ ENSRNOT00000108569

Ensembl Acc Id:

ENSRNOP00000097451 ⟸ ENSRNOT00000094276

Ensembl Acc Id:

ENSRNOP00000079989 ⟸ ENSRNOT00000114537

Ensembl Acc Id:

ENSRNOP00000080906 ⟸ ENSRNOT00000119596

Protein Domains

OCIA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIG4-F1-model_v2	AlphaFold	Q5XIG4	1-247	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699294

Promoter ID:

EPDNEW_R9819

Type:

initiation region

Name:

Ociad1_1

Description:

OCIA domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	37,475,408 - 37,475,468	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359549	AgrOrtholog
BioCyc Gene	G2FUF-15863	BioCyc
Ensembl Genes	ENSRNOG00000002205	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000002996	ENTREZGENE
	ENSRNOT00000114537	ENTREZGENE
IMAGE_CLONE	IMAGE:7190773	IMAGE-MGC_LOAD
InterPro	OCAD1/2	UniProtKB/Swiss-Prot
	OCIA_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:289590	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94612	IMAGE-MGC_LOAD
NCBI Gene	289590	ENTREZGENE
PANTHER	OCIA DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
	PTHR13336	UniProtKB/Swiss-Prot
Pfam	OCIA	UniProtKB/Swiss-Prot
PhenoGen	Ociad1	PhenoGen
RatGTEx	ENSRNOG00000002205	RatGTEx
UniProt	A0A8I5ZNM9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZQT6_RAT	UniProtKB/TrEMBL
	A0A8I5ZWR4_RAT	UniProtKB/TrEMBL
	A0A8I6GM27_RAT	UniProtKB/TrEMBL
	A0A8L2Q028	ENTREZGENE
	A6JD40	ENTREZGENE, UniProtKB/TrEMBL
	A6JD42_RAT	UniProtKB/TrEMBL
	A6JD43_RAT	UniProtKB/TrEMBL
	A6JD44_RAT	UniProtKB/TrEMBL
	A6JD45_RAT	UniProtKB/TrEMBL
	A6JD46_RAT	UniProtKB/TrEMBL
	A6JD50_RAT	UniProtKB/TrEMBL
	OCAD1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Ociad1	OCIA domain containing 1			Symbol and Name status set to approved	1299863	APPROVED
2005-07-29	Ociad1	OCIA domain containing 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD