Nudt9 (nudix hydrolase 9) - Rat Genome Database

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Gene: Nudt9 (nudix hydrolase 9) Rattus norvegicus
Analyze
Symbol: Nudt9
Name: nudix hydrolase 9
RGD ID: 1359522
Description: Predicted to enable ADP-ribose diphosphatase activity. Predicted to act upstream of or within ADP catabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol and mitochondrion. Orthologous to human NUDT9 (nudix hydrolase 9); PARTICIPATES IN purine metabolic pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: adenosine diphosphoribose pyrophosphatase; ADP-ribose diphosphatase; ADP-ribose phosphohydrolase; ADP-ribose pyrophosphatase, mitochondrial; ADPR-PPase; MGC94618; nucleoside diphosphate-linked moiety X motif 9; nudix (nucleoside diphosphate linked moiety X)-type motif 9; nudix -type motif 9; nudix motif 9; nudix-type motif 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8145,980,042 - 5,997,998 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl145,980,043 - 6,005,783 (-)EnsemblGRCr8
mRatBN7.2145,675,376 - 5,693,332 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl145,675,382 - 5,693,142 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx145,644,314 - 5,661,936 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0146,944,545 - 6,962,167 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0145,643,229 - 5,660,738 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,036,809 - 7,054,739 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,036,820 - 7,054,548 (-)Ensemblrn6Rnor6.0
Rnor_5.0147,027,805 - 7,045,650 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4146,809,091 - 6,840,664 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera145,814,249 - 5,831,921 (-)NCBICelera
RGSC_v3.1146,809,090 - 6,840,664 (-)NCBI
Cytogenetic Map14p22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO,ISS)
cytosol  (IEA,ISO)
mitochondrion  (IBA,IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cloning, expression and characterisation of a human Nudix hydrolase specific for adenosine 5'-diphosphoribose (ADP-ribose). Lin S, etal., Biochim Biophys Acta 2002 Jan 31;1594(1):127-35.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. NUDT9, a member of the Nudix hydrolase family, is an evolutionarily conserved mitochondrial ADP-ribose pyrophosphatase. Perraud AL, etal., J Biol Chem 2003 Jan 17;278(3):1794-801. Epub 2002 Nov 8.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12948489   PMID:14651853   PMID:15489334   PMID:19199708  


Genomics

Comparative Map Data
Nudt9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8145,980,042 - 5,997,998 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl145,980,043 - 6,005,783 (-)EnsemblGRCr8
mRatBN7.2145,675,376 - 5,693,332 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl145,675,382 - 5,693,142 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx145,644,314 - 5,661,936 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0146,944,545 - 6,962,167 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0145,643,229 - 5,660,738 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,036,809 - 7,054,739 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,036,820 - 7,054,548 (-)Ensemblrn6Rnor6.0
Rnor_5.0147,027,805 - 7,045,650 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4146,809,091 - 6,840,664 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera145,814,249 - 5,831,921 (-)NCBICelera
RGSC_v3.1146,809,090 - 6,840,664 (-)NCBI
Cytogenetic Map14p22NCBI
NUDT9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38487,422,573 - 87,459,455 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl487,422,573 - 87,459,455 (+)Ensemblhg38GRCh38
GRCh37488,343,725 - 88,380,607 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36488,562,759 - 88,598,523 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34488,700,913 - 88,736,676NCBI
Celera485,632,851 - 85,668,688 (+)NCBICelera
Cytogenetic Map4q22.1NCBI
HuRef484,089,445 - 84,126,567 (+)NCBIHuRef
CHM1_1488,320,565 - 88,357,444 (+)NCBICHM1_1
T2T-CHM13v2.0490,749,045 - 90,788,493 (+)NCBIT2T-CHM13v2.0
Nudt9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395104,193,407 - 104,213,244 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5104,194,172 - 104,213,245 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385104,045,538 - 104,065,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,046,306 - 104,065,379 (+)Ensemblmm10GRCm38
MGSCv375104,476,030 - 104,494,386 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365104,287,313 - 104,305,669 (+)NCBIMGSCv36mm8
Celera5101,357,378 - 101,372,169 (+)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.54NCBI
Nudt9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554742,397,665 - 2,438,048 (-)Ensembl
ChiLan1.0NW_0049554742,402,400 - 2,438,145 (-)NCBIChiLan1.0ChiLan1.0
NUDT9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2385,429,644 - 85,467,991 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1485,691,998 - 85,731,452 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0479,718,294 - 79,755,238 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1490,444,772 - 90,480,786 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl490,444,772 - 90,480,786 (+)EnsemblpanPan2panpan1.1
NUDT9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13210,862,532 - 10,887,162 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3210,862,527 - 10,886,863 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3231,067,073 - 31,091,840 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03210,915,072 - 10,939,887 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3210,915,086 - 10,941,964 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13210,995,646 - 11,020,459 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03210,824,276 - 10,849,032 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03229,106,577 - 29,131,379 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nudt9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052852,165,296 - 2,196,735 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936905584,558 - 616,508 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936905586,160 - 616,490 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDT9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8131,443,997 - 131,472,696 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.18131,436,245 - 131,472,984 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28140,656,077 - 140,685,012 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUDT9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1735,807,679 - 35,843,543 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl735,807,702 - 35,847,101 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603714,507,259 - 14,543,140 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nudt9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248723,928,146 - 3,962,030 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248723,928,078 - 3,962,030 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nudt9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11114,112,316 - 14,131,239 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nudt9
223 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:109
Interacting mature miRNAs:120
Transcripts:ENSRNOT00000002973
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14395787821572472Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14395787824886169Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14395787818558812Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1439578789393298Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14395787831121464Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14111334906Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14117877928Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat

Markers in Region
AI105432  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2145,689,566 - 5,689,702 (+)MAPPERmRatBN7.2
Rnor_6.0147,051,010 - 7,051,145NCBIRnor6.0
Rnor_5.0147,041,998 - 7,042,133UniSTSRnor5.0
RGSC_v3.4146,837,126 - 6,837,261UniSTSRGSC3.4
Celera145,828,383 - 5,828,518UniSTS
RH 3.4 Map14114.4UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002973   ⟹   ENSRNOP00000002973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl145,980,043 - 5,997,771 (-)Ensembl
mRatBN7.2 Ensembl145,675,382 - 5,693,142 (-)Ensembl
Rnor_6.0 Ensembl147,036,820 - 7,054,548 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000155501   ⟹   ENSRNOP00000105881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl145,980,043 - 6,005,783 (-)Ensembl
RefSeq Acc Id: NM_001006991   ⟹   NP_001006992
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8145,980,042 - 5,997,771 (-)NCBI
mRatBN7.2145,675,376 - 5,693,105 (-)NCBI
Rnor_6.0147,036,819 - 7,054,548 (-)NCBI
Rnor_5.0147,027,805 - 7,045,650 (-)NCBI
RGSC_v3.4146,809,091 - 6,840,664 (-)RGD
Celera145,814,249 - 5,831,921 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250630   ⟹   XP_006250692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8145,980,042 - 5,997,998 (-)NCBI
mRatBN7.2145,675,376 - 5,693,332 (-)NCBI
Rnor_6.0147,036,809 - 7,054,739 (-)NCBI
Rnor_5.0147,027,805 - 7,045,650 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250631   ⟹   XP_006250693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8145,980,042 - 5,997,924 (-)NCBI
mRatBN7.2145,675,376 - 5,693,196 (-)NCBI
Rnor_6.0147,036,809 - 7,054,640 (-)NCBI
Rnor_5.0147,027,805 - 7,045,650 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599163   ⟹   XP_017454652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8145,980,042 - 5,997,848 (-)NCBI
mRatBN7.2145,675,376 - 5,693,167 (-)NCBI
Rnor_6.0147,036,809 - 7,054,610 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001006992   ⟸   NM_001006991
- UniProtKB: Q5XIG0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250692   ⟸   XM_006250630
- Peptide Label: isoform X1
- UniProtKB: A6K5T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250693   ⟸   XM_006250631
- Peptide Label: isoform X1
- UniProtKB: A6K5T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454652   ⟸   XM_017599163
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000002973   ⟸   ENSRNOT00000002973
Ensembl Acc Id: ENSRNOP00000105881   ⟸   ENSRNOT00000155501
Protein Domains
Nudix hydrolase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIG0-F1-model_v2 AlphaFold Q5XIG0 1-350 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699176
Promoter ID:EPDNEW_R9701
Type:initiation region
Name:Nudt9_1
Description:nudix hydrolase 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0147,054,551 - 7,054,611EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359522 AgrOrtholog
BioCyc Gene G2FUF-16497 BioCyc
Ensembl Genes ENSRNOG00000002186 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000002973 ENTREZGENE
  ENSRNOT00000002973.5 UniProtKB/Swiss-Prot
  ENSRNOT00000155501 ENTREZGENE
Gene3D-CATH Nucleoside Triphosphate Pyrophosphohydrolase UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7190984 IMAGE-MGC_LOAD
InterPro NUDIX_hydrolase-like_dom_sf UniProtKB/Swiss-Prot
  NUDIX_hydrolase_dom UniProtKB/Swiss-Prot
  NUDT9 UniProtKB/Swiss-Prot
KEGG Report rno:305149 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94618 IMAGE-MGC_LOAD
NCBI Gene 305149 ENTREZGENE
PANTHER ADP-RIBOSE PYROPHOSPHATASE, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR13030 UniProtKB/Swiss-Prot
Pfam NUDIX UniProtKB/Swiss-Prot
PhenoGen Nudt9 PhenoGen
PROSITE NUDIX UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002186 RatGTEx
Superfamily-SCOP SSF55811 UniProtKB/Swiss-Prot
UniProt A0ABK0L789_RAT UniProtKB/TrEMBL
  A6K5T5 ENTREZGENE, UniProtKB/TrEMBL
  A6K5T6_RAT UniProtKB/TrEMBL
  A6K5T7_RAT UniProtKB/TrEMBL
  NUDT9_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-10 Nudt9  nudix hydrolase 9  Nudt9  nudix (nucleoside diphosphate linked moiety X)-type motif 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Nudt9  nudix (nucleoside diphosphate linked moiety X)-type motif 9    nudix -type motif 9  Name updated 1299863 APPROVED
2005-07-29 Nudt9  nudix -type motif 9      Symbol and Name status set to provisional 70820 PROVISIONAL