Qrsl1 (glutaminyl-tRNA amidotransferase subunit QRSL1) - Rat Genome Database

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Pathways
Gene: Qrsl1 (glutaminyl-tRNA amidotransferase subunit QRSL1) Rattus norvegicus
Analyze
Symbol: Qrsl1
Name: glutaminyl-tRNA amidotransferase subunit QRSL1
RGD ID: 1359490
Description: Predicted to enable ATP binding activity and carbon-nitrogen ligase activity, with glutamine as amido-N-donor. Predicted to contribute to glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Predicted to be involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Predicted to act upstream of or within regulation of protein stability. Predicted to be part of glutamyl-tRNA(Gln) amidotransferase complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 40. Orthologous to human QRSL1 (glutaminyl-tRNA amidotransferase subunit QRSL1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: glu-AdT subunit A; glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1; glutaminyl-tRNA synthase-like protein 1; glutamyl-tRNA(Gln) amidotransferase subunit A homolog; glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; LOC309911; MGC105526; QRSL1, glutaminyl-tRNA amidotransferase subunit A; similar to glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,939,858 - 48,964,812 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2048,939,858 - 48,964,812 (-)EnsemblGRCr8
mRatBN7.22047,357,206 - 47,382,160 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2047,357,216 - 47,382,135 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2049,081,037 - 49,105,743 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,730,907 - 48,755,617 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02049,412,778 - 49,437,714 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02048,855,839 - 48,881,112 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,855,914 - 48,881,119 (-)Ensemblrn6Rnor6.0
Rnor_5.02050,498,355 - 50,523,543 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42047,793,416 - 47,818,351 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2052,611,574 - 52,635,840 (+)NCBICelera
RGSC_v3.12047,822,112 - 47,847,048 (-)NCBI
Cytogenetic Map20q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19805282   PMID:24579914  


Genomics

Comparative Map Data
Qrsl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,939,858 - 48,964,812 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2048,939,858 - 48,964,812 (-)EnsemblGRCr8
mRatBN7.22047,357,206 - 47,382,160 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2047,357,216 - 47,382,135 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2049,081,037 - 49,105,743 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,730,907 - 48,755,617 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02049,412,778 - 49,437,714 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02048,855,839 - 48,881,112 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,855,914 - 48,881,119 (-)Ensemblrn6Rnor6.0
Rnor_5.02050,498,355 - 50,523,543 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42047,793,416 - 47,818,351 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2052,611,574 - 52,635,840 (+)NCBICelera
RGSC_v3.12047,822,112 - 47,847,048 (-)NCBI
Cytogenetic Map20q13NCBI
QRSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386106,629,578 - 106,668,417 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6106,629,572 - 106,668,417 (+)Ensemblhg38GRCh38
GRCh376107,077,453 - 107,116,292 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366107,184,146 - 107,222,103 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346107,184,145 - 107,222,103NCBI
Celera6107,698,355 - 107,737,185 (+)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6104,524,550 - 104,563,384 (+)NCBIHuRef
CHM1_16107,340,205 - 107,379,052 (+)NCBICHM1_1
T2T-CHM13v2.06107,806,065 - 107,844,870 (+)NCBIT2T-CHM13v2.0
Qrsl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,750,184 - 43,777,742 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1043,750,184 - 43,777,741 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381043,874,188 - 43,901,742 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,874,188 - 43,901,745 (-)Ensemblmm10GRCm38
MGSCv371043,593,996 - 43,621,542 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361043,562,501 - 43,590,154 (-)NCBIMGSCv36mm8
Celera1044,746,059 - 44,773,667 (-)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1023.11NCBI
Qrsl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541131,950,828 - 31,981,468 (+)Ensembl
ChiLan1.0NW_00495541131,950,727 - 31,981,522 (+)NCBIChiLan1.0ChiLan1.0
QRSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25126,650,256 - 126,687,359 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16124,537,486 - 124,576,429 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06104,444,646 - 104,481,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16108,315,270 - 108,353,505 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6108,315,270 - 108,353,505 (+)EnsemblpanPan2panpan1.1
QRSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11263,972,423 - 64,003,506 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1263,759,642 - 63,792,333 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01264,815,666 - 64,848,426 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1264,815,691 - 64,848,416 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11264,176,598 - 64,208,991 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01264,019,223 - 64,051,741 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01264,293,008 - 64,325,953 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Qrsl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494698,874,322 - 98,904,602 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365643,149,278 - 3,179,415 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365643,149,154 - 3,179,514 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
QRSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl172,815,613 - 72,844,843 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1172,815,601 - 72,846,871 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,112,141 - 82,145,804 (+)NCBISscrofa10.2Sscrofa10.2susScr3
QRSL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11367,153,372 - 67,188,775 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1367,151,437 - 67,189,662 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604039,487,556 - 39,525,430 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Qrsl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478015,628,678 - 15,664,651 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478015,629,167 - 15,664,787 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Qrsl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11843,576,266 - 43,601,273 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Qrsl1
170 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:187
Count of miRNA genes:133
Interacting mature miRNAs:148
Transcripts:ENSRNOT00000018892
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
RH129971  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82048,944,202 - 48,944,880 (+)Marker Load Pipeline
mRatBN7.22047,361,550 - 47,362,228 (+)MAPPERmRatBN7.2
Rnor_6.02048,860,313 - 48,860,990NCBIRnor6.0
Rnor_5.02050,502,748 - 50,503,425UniSTSRnor5.0
RGSC_v3.42047,797,756 - 47,798,433UniSTSRGSC3.4
Celera2052,631,485 - 52,632,162UniSTS
RH 3.4 Map20495.42UniSTS
Cytogenetic Map20q13UniSTS
RH133719  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22047,357,281 - 47,357,492 (-)MAPPERmRatBN7.2
mRatBN7.22047,357,281 - 47,357,492 (+)MAPPERmRatBN7.2
Rnor_6.02048,856,044 - 48,856,254NCBIRnor6.0
Rnor_6.01134,697,493 - 34,697,703NCBIRnor6.0
Rnor_5.02050,498,479 - 50,498,689UniSTSRnor5.0
Rnor_5.01138,288,899 - 38,289,109UniSTSRnor5.0
RGSC_v3.42047,793,487 - 47,793,697UniSTSRGSC3.4
Celera2052,635,559 - 52,635,769UniSTS
RH 3.4 Map20494.82UniSTS
Cytogenetic Map11q11UniSTS
Cytogenetic Map20q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 91 59 6 355 191 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000018892   ⟹   ENSRNOP00000018891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2048,939,858 - 48,964,812 (-)Ensembl
mRatBN7.2 Ensembl2047,357,216 - 47,382,135 (-)Ensembl
Rnor_6.0 Ensembl2048,855,914 - 48,881,119 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101938   ⟹   ENSRNOP00000080547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2048,939,858 - 48,959,950 (-)Ensembl
mRatBN7.2 Ensembl2047,357,216 - 47,377,299 (-)Ensembl
RefSeq Acc Id: NM_001014034   ⟹   NP_001014056
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,939,858 - 48,964,812 (-)NCBI
mRatBN7.22047,357,206 - 47,382,160 (-)NCBI
Rnor_6.02048,855,973 - 48,881,071 (-)NCBI
Rnor_5.02050,498,355 - 50,523,543 (-)NCBI
RGSC_v3.42047,793,416 - 47,818,351 (-)RGD
Celera2052,611,574 - 52,635,840 (+)RGD
Sequence:
RefSeq Acc Id: XM_063279187   ⟹   XP_063135257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,939,858 - 48,950,576 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001014056 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135257 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89213 (Get FASTA)   NCBI Sequence Viewer  
  EDL99683 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018891
  ENSRNOP00000018891.5
GenBank Protein Q5FWT5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001014056   ⟸   NM_001014034
- UniProtKB: Q5FWT5 (UniProtKB/Swiss-Prot),   A0A8I5ZPV2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018891   ⟸   ENSRNOT00000018892
Ensembl Acc Id: ENSRNOP00000080547   ⟸   ENSRNOT00000101938
RefSeq Acc Id: XP_063135257   ⟸   XM_063279187
- Peptide Label: isoform X1
Protein Domains
Amidase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FWT5-F1-model_v2 AlphaFold Q5FWT5 1-525 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701680
Promoter ID:EPDNEW_R12204
Type:multiple initiation site
Name:Qrsl1_1
Description:glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02048,881,083 - 48,881,143EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359490 AgrOrtholog
BioCyc Gene G2FUF-3309 BioCyc
BioCyc Pathway CITRULBIO-PWY [L-citrulline biosynthesis] BioCyc
  GLUTAMINDEG-PWY [L-glutamine degradation I] BioCyc
  PWY-5921 [glutaminyl-tRNAgln biosynthesis via transamidation] BioCyc
BioCyc Pathway Image CITRULBIO-PWY BioCyc
  GLUTAMINDEG-PWY BioCyc
  PWY-5921 BioCyc
Ensembl Genes ENSRNOG00000026049 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000018892 ENTREZGENE
  ENSRNOT00000018892.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.1300.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7302358 IMAGE-MGC_LOAD
InterPro Amidase UniProtKB/Swiss-Prot
  Amidase_dom UniProtKB/Swiss-Prot
  AS_sf UniProtKB/Swiss-Prot
  GatA UniProtKB/Swiss-Prot
KEGG Report rno:309911 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105526 IMAGE-MGC_LOAD
NCBI Gene 309911 ENTREZGENE
PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR11895 UniProtKB/Swiss-Prot
Pfam Amidase UniProtKB/Swiss-Prot
PhenoGen Qrsl1 PhenoGen
RatGTEx ENSRNOG00000026049 RatGTEx
Superfamily-SCOP SSF75304 UniProtKB/Swiss-Prot
UniProt A0A8I5ZPV2 ENTREZGENE, UniProtKB/TrEMBL
  A6K6W4_RAT UniProtKB/TrEMBL
  GATA_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-03 Qrsl1  glutaminyl-tRNA amidotransferase subunit QRSL1  Qrsl1  QRSL1, glutaminyl-tRNA amidotransferase subunit A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-07-26 Qrsl1  QRSL1, glutaminyl-tRNA amidotransferase subunit A  Qrsl1  glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Qrsl1  glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1  LOC309911  similar to glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1  Symbol and Name updated 1299863 APPROVED
2005-07-29 LOC309911  similar to glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL