Chchd10 (coiled-coil-helix-coiled-coil-helix domain containing 10) - Rat Genome Database

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Gene: Chchd10 (coiled-coil-helix-coiled-coil-helix domain containing 10) Rattus norvegicus
Analyze
Symbol: Chchd10
Name: coiled-coil-helix-coiled-coil-helix domain containing 10
RGD ID: 1359417
Description: Predicted to be involved in inner mitochondrial membrane organization. Predicted to be located in mitochondrial intermembrane space. Predicted to be part of MICOS complex. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in frontotemporal dementia and/or amyotrophic lateral sclerosis 2; isolated mitochondrial myopathy; and spinal muscular atrophy, Jokela type. Orthologous to human CHCHD10 (coiled-coil-helix-coiled-coil-helix domain containing 10); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial; LOC103694872; MGC105647; Ndg2; Nur77 downstream gene 2; similar to Nur77 downstream protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,725,274 - 12,730,295 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2012,725,277 - 12,745,677 (-)EnsemblGRCr8
mRatBN7.22012,725,839 - 12,727,638 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,725,842 - 12,732,763 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2013,432,473 - 13,434,272 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02012,793,393 - 12,795,192 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,265,186 - 13,266,985 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,665,046 - 13,666,845 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,665,031 - 13,667,333 (-)Ensemblrn6Rnor6.0
Rnor_5.02015,820,609 - 15,822,408 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42013,124,662 - 13,126,461 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2014,217,149 - 14,218,873 (-)NCBICelera
RGSC_v3.12013,124,889 - 13,126,688 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antimycin A  (ISO)
atrazine  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diquat  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hydralazine  (ISO)
imidacloprid  (EXP)
L-methionine  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
nitrofen  (EXP)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
Tesaglitazar  (EXP)
tetrachloromethane  (ISO)
thiabendazole  (EXP)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (EXP)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14551195   PMID:18614015   PMID:20888800   PMID:24934289   PMID:26666268   PMID:28585542   PMID:30092269  


Genomics

Comparative Map Data
Chchd10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,725,274 - 12,730,295 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2012,725,277 - 12,745,677 (-)EnsemblGRCr8
mRatBN7.22012,725,839 - 12,727,638 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,725,842 - 12,732,763 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2013,432,473 - 13,434,272 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02012,793,393 - 12,795,192 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,265,186 - 13,266,985 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,665,046 - 13,666,845 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,665,031 - 13,667,333 (-)Ensemblrn6Rnor6.0
Rnor_5.02015,820,609 - 15,822,408 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42013,124,662 - 13,126,461 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2014,217,149 - 14,218,873 (-)NCBICelera
RGSC_v3.12013,124,889 - 13,126,688 (-)NCBI
Cytogenetic Map20p12NCBI
CHCHD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382223,765,834 - 23,767,972 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2223,765,834 - 23,767,982 (-)Ensemblhg38GRCh38
GRCh372224,108,021 - 24,110,159 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362222,438,021 - 22,440,141 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342222,432,575 - 22,434,695NCBI
Celera227,947,114 - 7,949,233 (-)NCBICelera
Cytogenetic Map22q11.23NCBI
HuRef227,096,091 - 7,098,209 (-)NCBIHuRef
CHM1_12224,120,261 - 24,122,381 (-)NCBICHM1_1
T2T-CHM13v2.02224,213,028 - 24,215,165 (-)NCBIT2T-CHM13v2.0
Chchd10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,768,964 - 75,773,584 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1075,768,964 - 75,773,581 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381075,933,130 - 75,937,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1075,933,130 - 75,937,747 (+)Ensemblmm10GRCm38
MGSCv371075,398,318 - 75,400,479 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361075,379,289 - 75,381,450 (+)NCBIMGSCv36mm8
Celera1076,980,258 - 76,982,419 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.62NCBI
Chchd10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,472,833 - 8,479,129 (+)Ensembl
ChiLan1.0NW_0049554558,472,833 - 8,474,745 (+)NCBIChiLan1.0ChiLan1.0
CHCHD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22333,497,453 - 33,500,112 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12236,233,958 - 36,236,617 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0224,521,604 - 4,523,740 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12222,606,921 - 22,608,605 (-)NCBIPanPan1.1PanPan1.1panPan2
CHCHD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12628,742,466 - 28,744,370 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2628,742,526 - 28,744,369 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2627,815,913 - 27,817,710 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02630,147,725 - 30,149,550 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2630,146,627 - 30,149,549 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12628,228,867 - 28,230,698 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02627,846,836 - 27,848,631 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02628,834,674 - 28,836,505 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Chchd10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118141,428,540 - 141,430,468 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366191,323,246 - 1,325,522 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366191,323,247 - 1,325,520 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHCHD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1449,921,595 - 49,923,526 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11449,921,600 - 49,923,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,363,915 - 53,365,840 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHCHD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,882,007 - 6,884,176 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,878,662 - 6,884,655 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666100488,809 - 490,973 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chchd10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474710,412,012 - 10,413,969 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474710,411,933 - 10,413,969 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Chchd10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11811,509,939 - 11,511,799 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Chchd10
26 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:87
Interacting mature miRNAs:88
Transcripts:ENSRNOT00000031472
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804392015089182Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
AI267078  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82012,725,310 - 12,725,659 (+)Marker Load Pipeline
mRatBN7.22012,725,870 - 12,726,219 (+)MAPPERmRatBN7.2
Rnor_6.02013,665,078 - 13,665,426NCBIRnor6.0
Rnor_5.02015,820,641 - 15,820,989UniSTSRnor5.0
RGSC_v3.42013,124,694 - 13,125,042UniSTSRGSC3.4
Celera2014,217,181 - 14,217,529UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
7 5 55 71 6 7 1 69 1 222 142 11 65 71 62 6 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001007008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000031472   ⟹   ENSRNOP00000031008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2012,725,277 - 12,745,677 (-)Ensembl
mRatBN7.2 Ensembl2012,725,842 - 12,732,763 (-)Ensembl
Rnor_6.0 Ensembl2013,665,031 - 13,667,333 (-)Ensembl
RefSeq Acc Id: NM_001007008   ⟹   NP_001007009
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,279 - 12,727,078 (-)NCBI
mRatBN7.22012,725,839 - 12,727,638 (-)NCBI
Rnor_6.02013,665,046 - 13,666,845 (-)NCBI
Rnor_5.02015,820,609 - 15,822,408 (-)NCBI
RGSC_v3.42013,124,662 - 13,126,461 (-)RGD
Celera2014,217,149 - 14,218,873 (-)RGD
Sequence:
RefSeq Acc Id: XM_063279234   ⟹   XP_063135304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,295 (-)NCBI
RefSeq Acc Id: XM_063279235   ⟹   XP_063135305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,151 (-)NCBI
RefSeq Acc Id: XM_063279236   ⟹   XP_063135306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,170 (-)NCBI
RefSeq Acc Id: XM_063279237   ⟹   XP_063135307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,295 (-)NCBI
RefSeq Acc Id: XM_063279238   ⟹   XP_063135308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,142 (-)NCBI
RefSeq Acc Id: XM_063279239   ⟹   XP_063135309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,213 (-)NCBI
RefSeq Acc Id: XM_063279240   ⟹   XP_063135310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,165 (-)NCBI
RefSeq Acc Id: XM_063279241   ⟹   XP_063135311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,182 (-)NCBI
RefSeq Acc Id: XM_063279242   ⟹   XP_063135312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,194 (-)NCBI
RefSeq Acc Id: XM_063279243   ⟹   XP_063135313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,142 (-)NCBI
RefSeq Acc Id: XM_063279244   ⟹   XP_063135314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,725,274 - 12,730,182 (-)NCBI
RefSeq Acc Id: NP_001007009   ⟸   NM_001007008
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000031008   ⟸   ENSRNOT00000031472
RefSeq Acc Id: XP_063135307   ⟸   XM_063279237
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135304   ⟸   XM_063279234
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135309   ⟸   XM_063279239
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135312   ⟸   XM_063279242
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135311   ⟸   XM_063279241
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135314   ⟸   XM_063279244
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135306   ⟸   XM_063279236
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135310   ⟸   XM_063279240
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135305   ⟸   XM_063279235
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135313   ⟸   XM_063279243
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135308   ⟸   XM_063279238
- Peptide Label: isoform X1
- UniProtKB: Q63ZY8 (UniProtKB/TrEMBL)
Protein Domains
CHCH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63ZY8-F1-model_v2 AlphaFold Q63ZY8 1-138 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701527
Promoter ID:EPDNEW_R12051
Type:initiation region
Name:LOC103694872_1
Description:coiled-coil-helix-coiled-coil-helix domain-containing protein10, mitochondrial
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02013,666,860 - 13,666,920EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359417 AgrOrtholog
BioCyc Gene G2FUF-4167 BioCyc
Ensembl Genes ENSRNOG00000028356 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031472.7 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7300825 IMAGE-MGC_LOAD
InterPro CHCH UniProtKB/TrEMBL
  CHCHD2/10-like UniProtKB/TrEMBL
KEGG Report rno:361824 UniProtKB/TrEMBL
MGC_CLONE MGC:105647 IMAGE-MGC_LOAD
NCBI Gene 361824 ENTREZGENE
PANTHER COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 UniProtKB/TrEMBL
  COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN-CONTAINING PROTEIN 10, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam CHCH UniProtKB/TrEMBL
PhenoGen Chchd10 PhenoGen
PROSITE CHCH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000028356 RatGTEx
UniProt F7EXD9_RAT UniProtKB/TrEMBL
  Q63ZY8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Chchd10  coiled-coil-helix-coiled-coil-helix domain containing 10  LOC103694872  coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial  Data merged from RGD:9377836 737654 PROVISIONAL
2014-08-25 LOC103694872  coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-09 Chchd10  coiled-coil-helix-coiled-coil-helix domain containing 10  Ndg2  Nur77 downstream gene 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Ndg2  Nur77 downstream gene 2  MGC105647  similar to Nur77 downstream protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 MGC105647  similar to Nur77 downstream protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL