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Gene: Uba1 (ubiquitin-like modifier activating enzyme 1) Rattus norvegicus

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Symbol:

Uba1

Name:

ubiquitin-like modifier activating enzyme 1

RGD ID:

1359327

Description:

Predicted to enable ubiquitin activating enzyme activity. Predicted to be involved in DNA damage response; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in several cellular components, including bounding membrane of organelle; desmosome; and heterochromatin. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in VEXAS syndrome and X-linked spinal muscular atrophy 2. Orthologous to human UBA1 (ubiquitin like modifier activating enzyme 1); PARTICIPATES IN Parkinson's disease pathway; ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,5-hexanedione; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC314432; similar to ubiquitin-protein ligase (EC 6.3.2.19) E1 - mouse; Ube1x; ubiquitin-activating enzyme E1, Chr X; ubiquitin-like modifier-activating enzyme 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	4,062,216 - 4,084,192 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	4,062,182 - 4,084,246 (-)	Ensembl				GRCr8
mRatBN7.2	X	1,508,700 - 1,530,677 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	1,508,666 - 1,530,636 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	1,542,708 - 1,561,181 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	5,018,410 - 5,036,883 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	1,333,715 - 1,352,202 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	1,723,135 - 1,745,147 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	1,723,174 - 1,741,701 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	2,516,602 - 2,538,602 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	12,926,049 - 12,944,522 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	2,072,832 - 2,091,181 (-)	NCBI		Celera
RGSC_v3.1	X	12,931,605 - 12,950,078 (-)	NCBI
Cytogenetic Map	X	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

squamous cell carcinoma (ISO)

VEXAS syndrome (ISO)

X-linked spinal muscular atrophy 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17beta-estradiol (ISO)

2,2,2-tetramine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,5-hexanedione (EXP)

2,6-dimethoxyphenol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxynon-2-enal (ISO)

4-phenylbutyric acid (EXP)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benomyl (ISO)

Benoxacor (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

copper(II) chloride (ISO)

coumarin (ISO)

CU-O LINKAGE (ISO)

Cuprizon (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

diethyldithiocarbamic acid (EXP,ISO)

dimethyldithiocarbamate (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

FR900359 (ISO)

furan (EXP)

furfural (ISO)

glafenine (EXP)

indometacin (ISO)

inulin (ISO)

isoniazide (ISO)

isoprenaline (EXP)

ivermectin (ISO)

lead(0) (ISO)

lead(II) chloride (ISO)

maneb (ISO)

manganese(II) chloride (ISO)

metam (ISO)

methamphetamine (EXP)

methimazole (EXP)

methotrexate (ISO)

methylmercury chloride (ISO)

molinate (ISO)

Monobutylphthalate (ISO)

N-nitrosodiethylamine (ISO)

Nutlin-3 (ISO)

ochratoxin A (ISO)

okadaic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

PhIP (EXP)

potassium dichromate (ISO)

propiconazole (EXP)

prostaglandin A1 (ISO)

pyrrolidine dithiocarbamate (ISO)

quercetin (ISO)

rotenone (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

SKF 38393 (EXP)

sodium arsenite (ISO)

sodium chloride (ISO)

streptozocin (EXP)

sulfadimethoxine (EXP)

temozolomide (ISO)

thapsigargin (EXP)

theophylline (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (ISO)

Tributyltin oxide (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

zearalenone (ISO)

zinc atom (ISO)

zinc dichloride (ISO)

zinc(0) (ISO)

ziram (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (IBA,IEA,ISO)

protein ubiquitination (IBA,IEA)

ubiquitin-dependent protein catabolic process (IBA)

Cellular Component

cytoplasm (IBA,IEA,ISO,ISS)

cytosol (IEA,ISO)

desmosome (IEA,ISO)

endosome membrane (IEA,ISO)

heterochromatin (IEA,ISO)

lysosomal membrane (IEA,ISO)

mitochondrion (IEA,ISO,ISS)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO,ISS)

rough endoplasmic reticulum membrane (IEA,ISO)

Molecular Function

ATP binding (IEA)

ligase activity (IEA)

nucleotide binding (IEA)

protein binding (IPI,ISO)

ubiquitin activating enzyme activity (IBA,IEA,ISO)

ubiquitin-like modifier activating enzyme activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Parkinson's disease pathway (IEA)

ubiquitin/proteasome degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Gigaxonin-controlled degradation of MAP1B light chain is critical to neuronal survival.	Allen E, etal., Nature. 2005 Nov 10;438(7065):224-8. doi: 10.1038/nature04256. Epub 2005 Oct 16.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:1376922	PMID:1511901	PMID:12629039	PMID:18818210	PMID:19056867	PMID:19199708	PMID:20448150	PMID:20458337	PMID:21630459	PMID:21685362	PMID:22082260	PMID:22456334
PMID:22658674	PMID:22681889	PMID:22871113	PMID:23376485	PMID:23533145	PMID:26919560	PMID:28131823	PMID:33450132

Genomics

Comparative Map Data

Uba1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	4,062,216 - 4,084,192 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	4,062,182 - 4,084,246 (-)	Ensembl				GRCr8
mRatBN7.2	X	1,508,700 - 1,530,677 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	1,508,666 - 1,530,636 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	1,542,708 - 1,561,181 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	5,018,410 - 5,036,883 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	1,333,715 - 1,352,202 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	1,723,135 - 1,745,147 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	1,723,174 - 1,741,701 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	2,516,602 - 2,538,602 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	12,926,049 - 12,944,522 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	2,072,832 - 2,091,181 (-)	NCBI		Celera
RGSC_v3.1	X	12,931,605 - 12,950,078 (-)	NCBI
Cytogenetic Map	X	q11	NCBI

UBA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	47,190,847 - 47,215,128 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	47,190,713 - 47,215,173 (+)	Ensembl			hg38	GRCh38
GRCh37	X	47,050,246 - 47,074,527 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	46,935,204 - 46,959,471 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	X	51,245,489 - 51,269,819 (+)	NCBI		Celera
Cytogenetic Map	X	p11.3	NCBI
HuRef	X	44,761,319 - 44,784,789 (+)	NCBI		HuRef
CHM1_1	X	47,081,686 - 47,106,022 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	46,600,543 - 46,624,827 (+)	NCBI		T2T-CHM13v2.0

Uba1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	20,524,660 - 20,549,420 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	20,524,565 - 20,549,418 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	20,658,302 - 20,683,179 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	20,658,326 - 20,683,179 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	20,235,547 - 20,260,305 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	19,815,380 - 19,840,138 (+)	NCBI		MGSCv36	mm8
Celera	X	18,792,750 - 18,813,110 (+)	NCBI		Celera
Cytogenetic Map	X	A1.3	NCBI
cM Map	X	16.15	NCBI

Uba1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955516	876,354 - 891,206 (-)	Ensembl
ChiLan1.0	NW_004955516	876,542 - 898,763 (-)	NCBI	ChiLan1.0	ChiLan1.0

UBA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	48,818,274 - 48,842,554 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	48,821,657 - 48,845,930 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	39,627,753 - 39,652,023 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	47,485,374 - 47,509,654 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	47,493,331 - 47,509,654 (+)	Ensembl			panPan2	panpan1.1

UBA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	40,784,240 - 40,807,072 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	40,783,809 - 40,807,069 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	15,159,372 - 15,182,235 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	40,918,209 - 40,941,099 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	40,918,225 - 40,941,097 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	40,905,897 - 40,928,783 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	40,893,780 - 40,916,640 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	40,986,880 - 41,009,744 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Uba1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	33,120,490 - 33,143,491 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	12,969,145 - 12,984,238 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	12,961,236 - 12,984,235 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	41,814,101 - 41,832,812 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	41,810,726 - 41,832,818 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	46,779,768 - 46,793,857 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	44,377,765 - 44,402,378 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	44,385,940 - 44,405,051 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666076	9,636,110 - 9,660,878 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Uba1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624887	3,963,871 - 3,984,243 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624887	3,961,699 - 3,983,772 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Uba1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	3,162,579 - 3,183,986 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Uba1
78 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	152
Count of miRNA genes:	108
Interacting mature miRNAs:	111
Transcripts:	ENSRNOT00000031115
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
70166	Bp65	Blood pressure QTL 65	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	14046933	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	4001493	24470521	Rat

Markers in Region

RH129666

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	1,508,722 - 1,508,912 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	1,723,194 - 1,723,383	NCBI	Rnor6.0
Rnor_5.0	X	2,516,625 - 2,516,814	UniSTS	Rnor5.0
RGSC_v3.4	X	12,926,072 - 12,926,261	UniSTS	RGSC3.4
Celera	X	2,072,855 - 2,073,044	UniSTS
Cytogenetic Map	X	q12	UniSTS

AA989744

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	1,508,832 - 1,508,932 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	1,723,304 - 1,723,403	NCBI	Rnor6.0
Rnor_5.0	X	2,516,735 - 2,516,834	UniSTS	Rnor5.0
RGSC_v3.4	X	12,926,182 - 12,926,281	UniSTS	RGSC3.4
Celera	X	2,072,965 - 2,073,064	UniSTS
Cytogenetic Map	X	q12	UniSTS

Ube1x

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	1,512,821 - 1,512,893 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	1,727,293 - 1,727,364	NCBI	Rnor6.0
Rnor_5.0	X	2,520,724 - 2,520,795	UniSTS	Rnor5.0
RGSC_v3.4	X	12,930,171 - 12,930,242	UniSTS	RGSC3.4
Celera	X	2,076,954 - 2,077,025	UniSTS
Cytogenetic Map	X	q12	UniSTS

UniSTS:256410

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	1,508,928 - 1,509,874 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	1,723,400 - 1,724,345	NCBI	Rnor6.0
Rnor_5.0	X	2,516,831 - 2,517,776	UniSTS	Rnor5.0
RGSC_v3.4	X	12,926,278 - 12,927,223	UniSTS	RGSC3.4
Celera	X	2,073,061 - 2,074,006	UniSTS
Cytogenetic Map	X	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U09055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031115 ⟹ ENSRNOP00000033950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	4,062,182 - 4,076,152 (-)	Ensembl
mRatBN7.2 Ensembl	X	1,508,666 - 1,522,637 (-)	Ensembl
Rnor_6.0 Ensembl	X	1,723,174 - 1,741,701 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085338 ⟹ ENSRNOP00000084488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	4,062,182 - 4,084,246 (-)	Ensembl
mRatBN7.2 Ensembl	X	1,508,702 - 1,530,636 (-)	Ensembl

RefSeq Acc Id:

NM_001014080 ⟹ NP_001014102

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	4,062,216 - 4,080,689 (-)	NCBI
mRatBN7.2	X	1,508,700 - 1,527,174 (-)	NCBI
Rnor_6.0	X	1,723,171 - 1,741,644 (-)	NCBI
Rnor_5.0	X	2,516,602 - 2,538,602 (-)	NCBI
RGSC_v3.4	X	12,926,049 - 12,944,522 (-)	RGD
Celera	X	2,072,832 - 2,091,181 (-)	RGD

Sequence:

show sequence

TGAAGGAGGGTGTCAAGGAAGACCACAACCACCGCGGTCGGGGGAGGAGAAGGCGACAGTGATC
CTAGCTGGCCCAGGCGGCAGGGAGGAGAAGGAGAAAGAGGAGGGTGGCGGCCGAGCTTGACTTC
GGCTCCTTGAGGAGTTGGCGGCGGCACGACCCGGGGAACCGGCATTGATGTCCAGCTCGCCGCT
GTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCAGGTTCTAACTGCTCCTCTGCACAG
TCAGTGCTGTCCGAAGTGTCTTCAGTGCCAACCAACGGAATGGCGAAGAACGGCAGTGAAGCAG
ACATAGACGAGAGCCTTTACTCCCGGCAGCTGTACGTTTTGGGCCATGAGGCAATGAAAATGCT
CCAGACATCCAGTGTCCTCGTCTCAGGCTTGCGGGGCTTAGGTGTCGAGATTGCTAAGAACATC
ATCCTTGGTGGGGTCAAGGCTGTCACCCTACATGACCAAGGCACTACACAGTGGGCTGATCTCT
CCTCCCAGTTTTACCTTCGGGAGGAGGACATTGGTAAAAATCGAGCTGAGGTATCCCAGCCCCG
ACTTGCTGAACTCAACAGCTATGTACCTGTTACTGCCTACACTGGGCCTCTTGTTGAAGACTTC
CTTAGTGGTTTCCAGGTGGTGGTCCTTACCAACAGCCCCCTGGAAGAACAGCTTCGAGTGGGTG
AGTTCTGTCATAGCCGTGGCATCAAGCTAGTGGTGGCAGATACAAGAGGCCTATTTGGGCAACT
TTTCTGTGATTTTGGAGAGGAAATGGTTCTCACAGATTCCAATGGGGAGCAGCCACTCAGTGCT
ATGGTTTCAATGGTCACCAAGGACAACCCCGGTGTGGTTACCTGCCTTGATGAGGCCCGACATG
GCTTTGAGACTGGTGACTTCGTCTCATTCTCAGAAGTACAGGGCATGGTCCAACTCAATGGATG
TCAGCCCATAGAGATCAAAGTGCTGGGTCCTTATACTTTTAGTATCTGTGACACCTCCAACTTC
TCTGACTACATCCGTGGAGGCATCGTCAGCCAGGTCAAAGTACCTAAAAAGATTAGCTTTAAAT
CCTTGCCAGCATCACTGGCAGAGCCTGACTTTGTGATGACTGACTTTGCCAAGTATTCTCGCCC
TGCCCAACTGCACATTGGCTTTCAAGCTCTGCACCAATTCTGTGCTCAGCACAACCGACCACCT
CGACCACGAAATGAGGAAGATGCAACAGAACTGGTGACCCTAGCTCAGGCTGTGAATGCTCGGT
CCCCACCTGCAGTACAACAGGACAACGTGGATGAAGACCTTATTCGGAAGCTAGCTTATGTTGC
TGCTGGGGACCTGGCACCTATAAATGCTTTCATTGGGGGCCTCGCTGCCCAGGAAGTCATGAAG
GCCTGTTCTGGAAAGTTTATGCCCATCATGCAGTGGTTGTACTTTGATGCTCTTGAATGTCTCC
CAGAGGACAAAGAGGCTCTGACAGAGGACAAGTGCCTCCCACGTCAGAACCGTTATGATGGGCA
GGTAGCTGTATTTGGCTCAGACCTTCAAGAGAAGCTGGGCAAGCAAAAGTACTTCCTGGTGGGT
GCAGGGGCCATTGGCTGTGAATTGCTCAAGAACTTTGCCATGATTGGGTTAGGCTGTGGAGAGG
GTGGAGAGGTCGTGGTCACAGACATGGACACCATTGAGAAATCGAATCTGAACCGACAGTTTCT
TTTCCGGCCCTGGGATGTCACGAAGTTAAAGTCTGACACGGCCGCTGCAGCTGTGCGACAGATG
AATCCTTACATCCAGGTGACAAGCCACCAGAACCGTGTAGGCCCTGACACGGAGCGCATCTATG
ATGATGATTTTTTCCAAAATTTGGATGGTGTGGCCAATGCACTGGACAATGTAGATGCCCGGAT
GTACATGGATCGCCGCTGTGTGTACTATCGGAAGCCACTGCTAGAGTCTGGCACACTGGGCACA
AAGGGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAATCATACAGCTCTAGCCAGGACCCAC
CAGAGAAATCCATCCCCATTTGTACCCTGAAAAACTTTCCCAATGCCATCGAACACACTCTACA
GTGGGCCCGGGATGAATTTGAAGGCCTTTTCAAGCAGCCAGCAGAAAATGTTAATCAGTACCTC
ACAGACTCCAAATTTGTGGAGCGGACATTGCGGCTGGCGGGTACCCAGCCATTGGAGGTGCTGG
AGGCTGTGCAGCGCAGCCTGGTGCTGCAGCGACCACAGACTTGGGGCGACTGTGTGACCTGGGC
CTGCCACCACTGGCACACCCAGTACTGTAACAACATACGGCAGCTGCTGCACAACTTTCCTCCC
GACCAGCTCACCAGCTCAGGGGCCCCTTTCTGGTCTGGACCCAAACGATGTCCACACCCACTTA
CTTTTGATGTTAACAATACATTGCATCTGGATTATGTGATGGCTGCTGCCAACCTTTTTGCCCA
GACCTATGGGTTGACTGGCTCCCAAGACCGAGCTGCTGTGGCCTCACTCCTACAGTCAGTACAA
GTTCCAGAGTTCACCCCCAAGTCTGGTGTCAAGATCCATGTTTCTGACCAGGAGTTGCAGAGCG
CCAATGCCTCTGTTGATGACAGCCGTCTCGAGGAGCTCAAAGCCACACTGCCGAGCCCAGACAA
GTTACCTGGATTTAAGATGTACCCCATTGATTTTGAAAAGGACGATGACAGCAATTTCCACATG
GATTTCATTGTGGCTGCATCTAATCTTCGGGCCGAAAACTATGATATTTCCCCTGCAGACCGGC
ACAAGAGCAAGCTGATCGCAGGGAAGATCATCCCAGCTATCGCCACAACCACAGCTGCTGTGGT
TGGCCTTGTGTGTCTGGAACTCTACAAGGTAGTTCAGGGGCACCAACAACTTGATTCCTACAAA
AATGGTTTCCTGAATTTGGCCCTGCCCTTCTTTGGGTTTTCGGAACCTCTTGCTGCGCCTCGTC
ACCAGTACTATAATCAAGAGTGGACATTGTGGGATCGCTTTGAAGTACAAGGGCTACAGCCTAA
TGGTGAGGAGATGACTCTCAAGCAGTTCCTTGATTACTTTAAGACGGAGCACAAATTAGAGATC
ACCATGCTGTCCCAGGGTGTGTCCATGCTCTATTCTTTCTTCATGCCAGCTGCTAAGCTCAAGG
AACGGTTGGATCAGCCGATGACAGAGATTGTGAGCCGAGTGTCAAAGAGAAAGCTGGGCCGCCA
TGTGCGTGCACTGGTGCTTGAGCTGTGCTGCAACGATGAAAGTGGCGAGGACGTCGAGGTCCCC
TATGTACGATATACAATTCGCTGATCTCCATGAATTCCCCTAAGCCCTAGTCCCCCTACCCCCC
AGATCCTTTCCAGTCCTGGTTTCCATTTGGCCTCAGGCAGTGGTCCATCTAGCCAAGCCTGGAC
TTCCCTTATCACCCAGCAACCTCAAGATCCTCTCACCACTGCTTTGTACCTTGTTTGGAACCTA
AATCCCAATAAAAAAAAGATAACCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256612 ⟹ XP_006256674

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	4,062,216 - 4,084,161 (-)	NCBI
mRatBN7.2	X	1,508,700 - 1,530,634 (-)	NCBI
Rnor_6.0	X	1,723,135 - 1,745,070 (-)	NCBI
Rnor_5.0	X	2,516,602 - 2,538,602 (-)	NCBI

Sequence:

show sequence

TGCTCTTCCGTTGCCCTGTGGCTTCGGCTTGTCTCCAGAAGGAAGGCGAGGCTTCCGCCCAGCA
CTGGGGGGGGCGGATCAGCGTGCGGAAGGGGCGTGTTGACGGGGTATCCCGAAGTCTGCCTCAC
AATCTAGAGTTTATTGATAACCTATACAATAATCTGTGAAGATGTCCAGCTCGCCGCTGTCCAA
GAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCAGGTTCTAACTGCTCCTCTGCACAGTCAGTG
CTGTCCGAAGTGTCTTCAGTGCCAACCAACGGAATGGCGAAGAACGGCAGTGAAGCAGACATAG
ACGAGAGCCTTTACTCCCGGCAGCTGTACGTTTTGGGCCATGAGGCAATGAAAATGCTCCAGAC
ATCCAGTGTCCTCGTCTCAGGCTTGCGGGGCTTAGGTGTCGAGATTGCTAAGAACATCATCCTT
GGTGGGGTCAAGGCTGTCACCCTACATGACCAAGGCACTACACAGTGGGCTGATCTCTCCTCCC
AGTTTTACCTTCGGGAGGAGGACATTGGTAAAAATCGAGCTGAGGTATCCCAGCCCCGACTTGC
TGAACTCAACAGCTATGTACCTGTTACTGCCTACACTGGGCCTCTTGTTGAAGACTTCCTTAGT
GGTTTCCAGGTGGTGGTCCTTACCAACAGCCCCCTGGAAGAACAGCTTCGAGTGGGTGAGTTCT
GTCATAGCCGTGGCATCAAGCTAGTGGTGGCAGATACAAGAGGCCTATTTGGGCAACTTTTCTG
TGATTTTGGAGAGGAAATGGTTCTCACAGATTCCAATGGGGAGCAGCCACTCAGTGCTATGGTT
TCAATGGTCACCAAGGACAACCCCGGTGTGGTTACCTGCCTTGATGAGGCCCGACATGGCTTTG
AGACTGGTGACTTCGTCTCATTCTCAGAAGTACAGGGCATGGTCCAACTCAATGGATGTCAGCC
CATAGAGATCAAAGTGCTGGGTCCTTATACTTTTAGTATCTGTGACACCTCCAACTTCTCTGAC
TACATCCGTGGAGGCATCGTCAGCCAGGTCAAAGTACCTAAAAAGATTAGCTTTAAATCCTTGC
CAGCATCACTGGCAGAGCCTGACTTTGTGATGACTGACTTTGCCAAGTATTCTCGCCCTGCCCA
ACTGCACATTGGCTTTCAAGCTCTGCACCAATTCTGTGCTCAGCACAACCGACCACCTCGACCA
CGAAATGAGGAAGATGCAACAGAACTGGTGACCCTAGCTCAGGCTGTGAATGCTCGGTCCCCAC
CTGCAGTACAACAGGACAACGTGGATGAAGACCTTATTCGGAAGCTAGCTTATGTTGCTGCTGG
GGACCTGGCACCTATAAATGCTTTCATTGGGGGCCTCGCTGCCCAGGAAGTCATGAAGGCCTGT
TCTGGAAAGTTTATGCCCATCATGCAGTGGTTGTACTTTGATGCTCTTGAATGTCTCCCAGAGG
ACAAAGAGGCTCTGACAGAGGACAAGTGCCTCCCACGTCAGAACCGTTATGATGGGCAGGTAGC
TGTATTTGGCTCAGACCTTCAAGAGAAGCTGGGCAAGCAAAAGTACTTCCTGGTGGGTGCAGGG
GCCATTGGCTGTGAATTGCTCAAGAACTTTGCCATGATTGGGTTAGGCTGTGGAGAGGGTGGAG
AGGTCGTGGTCACAGACATGGACACCATTGAGAAATCGAATCTGAACCGACAGTTTCTTTTCCG
GCCCTGGGATGTCACGAAGTTAAAGTCTGACACGGCCGCTGCAGCTGTGCGACAGATGAATCCT
TACATCCAGGTGACAAGCCACCAGAACCGTGTAGGCCCTGACACGGAGCGCATCTATGATGATG
ATTTTTTCCAAAATTTGGATGGTGTGGCCAATGCACTGGACAATGTAGATGCCCGGATGTACAT
GGATCGCCGCTGTGTGTACTATCGGAAGCCACTGCTAGAGTCTGGCACACTGGGCACAAAGGGC
AATGTGCAGGTGGTGATCCCCTTCCTGACAGAATCATACAGCTCTAGCCAGGACCCACCAGAGA
AATCCATCCCCATTTGTACCCTGAAAAACTTTCCCAATGCCATCGAACACACTCTACAGTGGGC
CCGGGATGAATTTGAAGGCCTTTTCAAGCAGCCAGCAGAAAATGTTAATCAGTACCTCACAGAC
TCCAAATTTGTGGAGCGGACATTGCGGCTGGCGGGTACCCAGCCATTGGAGGTGCTGGAGGCTG
TGCAGCGCAGCCTGGTGCTGCAGCGACCACAGACTTGGGGCGACTGTGTGACCTGGGCCTGCCA
CCACTGGCACACCCAGTACTGTAACAACATACGGCAGCTGCTGCACAACTTTCCTCCCGACCAG
CTCACCAGCTCAGGGGCCCCTTTCTGGTCTGGACCCAAACGATGTCCACACCCACTTACTTTTG
ATGTTAACAATACATTGCATCTGGATTATGTGATGGCTGCTGCCAACCTTTTTGCCCAGACCTA
TGGGTTGACTGGCTCCCAAGACCGAGCTGCTGTGGCCTCACTCCTACAGTCAGTACAAGTTCCA
GAGTTCACCCCCAAGTCTGGTGTCAAGATCCATGTTTCTGACCAGGAGTTGCAGAGCGCCAATG
CCTCTGTTGATGACAGCCGTCTCGAGGAGCTCAAAGCCACACTGCCGAGCCCAGACAAGTTACC
TGGATTTAAGATGTACCCCATTGATTTTGAAAAGGACGATGACAGCAATTTCCACATGGATTTC
ATTGTGGCTGCATCTAATCTTCGGGCCGAAAACTATGATATTTCCCCTGCAGACCGGCACAAGA
GCAAGCTGATCGCAGGGAAGATCATCCCAGCTATCGCCACAACCACAGCTGCTGTGGTTGGCCT
TGTGTGTCTGGAACTCTACAAGGTAGTTCAGGGGCACCAACAACTTGATTCCTACAAAAATGGT
TTCCTGAATTTGGCCCTGCCCTTCTTTGGGTTTTCGGAACCTCTTGCTGCGCCTCGTCACCAGT
ACTATAATCAAGAGTGGACATTGTGGGATCGCTTTGAAGTACAAGGGCTACAGCCTAATGGTGA
GGAGATGACTCTCAAGCAGTTCCTTGATTACTTTAAGACGGAGCACAAATTAGAGATCACCATG
CTGTCCCAGGGTGTGTCCATGCTCTATTCTTTCTTCATGCCAGCTGCTAAGCTCAAGGAACGGT
TGGATCAGCCGATGACAGAGATTGTGAGCCGAGTGTCAAAGAGAAAGCTGGGCCGCCATGTGCG
TGCACTGGTGCTTGAGCTGTGCTGCAACGATGAAAGTGGCGAGGACGTCGAGGTCCCCTATGTA
CGATATACAATTCGCTGATCTCCATGAATTCCCCTAAGCCCTAGTCCCCCTACCCCCCAGATCC
TTTCCAGTCCTGGTTTCCATTTGGCCTCAGGCAGTGGTCCATCTAGCCAAGCCTGGACTTCCCT
TATCACCCAGCAACCTCAAGATCCTCTCACCACTGCTTTGTACCTTGTTTGGAACCTAAATCCC
AATAAAAAAAAGATAACCCAGATATAGCCATCTTGGCTGTCTCCAGGGAAGGAAGGAA

hide sequence

RefSeq Acc Id:

XM_006256613 ⟹ XP_006256675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	4,062,216 - 4,084,192 (-)	NCBI
mRatBN7.2	X	1,508,700 - 1,530,677 (-)	NCBI
Rnor_6.0	X	1,723,135 - 1,745,147 (-)	NCBI
Rnor_5.0	X	2,516,602 - 2,538,602 (-)	NCBI

Sequence:

show sequence

CAGACCCGGCCCTCTAAGGCCCCCGCGCTTCCGAGCTCCGCGCAAACTCTGGTTCTTTTTGCAC
GACCGAGGTGGTTTGCTCTTCCGTTGCCCTGTGGCTTCGGCTTGTCTCCAGAAGGAAGGCGAGG
CTTCCGCCCAGCACTGGGGATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCT
GATCCAAAGCCAGGTTCTAACTGCTCCTCTGCACAGTCAGTGCTGTCCGAAGTGTCTTCAGTGC
CAACCAACGGAATGGCGAAGAACGGCAGTGAAGCAGACATAGACGAGAGCCTTTACTCCCGGCA
GCTGTACGTTTTGGGCCATGAGGCAATGAAAATGCTCCAGACATCCAGTGTCCTCGTCTCAGGC
TTGCGGGGCTTAGGTGTCGAGATTGCTAAGAACATCATCCTTGGTGGGGTCAAGGCTGTCACCC
TACATGACCAAGGCACTACACAGTGGGCTGATCTCTCCTCCCAGTTTTACCTTCGGGAGGAGGA
CATTGGTAAAAATCGAGCTGAGGTATCCCAGCCCCGACTTGCTGAACTCAACAGCTATGTACCT
GTTACTGCCTACACTGGGCCTCTTGTTGAAGACTTCCTTAGTGGTTTCCAGGTGGTGGTCCTTA
CCAACAGCCCCCTGGAAGAACAGCTTCGAGTGGGTGAGTTCTGTCATAGCCGTGGCATCAAGCT
AGTGGTGGCAGATACAAGAGGCCTATTTGGGCAACTTTTCTGTGATTTTGGAGAGGAAATGGTT
CTCACAGATTCCAATGGGGAGCAGCCACTCAGTGCTATGGTTTCAATGGTCACCAAGGACAACC
CCGGTGTGGTTACCTGCCTTGATGAGGCCCGACATGGCTTTGAGACTGGTGACTTCGTCTCATT
CTCAGAAGTACAGGGCATGGTCCAACTCAATGGATGTCAGCCCATAGAGATCAAAGTGCTGGGT
CCTTATACTTTTAGTATCTGTGACACCTCCAACTTCTCTGACTACATCCGTGGAGGCATCGTCA
GCCAGGTCAAAGTACCTAAAAAGATTAGCTTTAAATCCTTGCCAGCATCACTGGCAGAGCCTGA
CTTTGTGATGACTGACTTTGCCAAGTATTCTCGCCCTGCCCAACTGCACATTGGCTTTCAAGCT
CTGCACCAATTCTGTGCTCAGCACAACCGACCACCTCGACCACGAAATGAGGAAGATGCAACAG
AACTGGTGACCCTAGCTCAGGCTGTGAATGCTCGGTCCCCACCTGCAGTACAACAGGACAACGT
GGATGAAGACCTTATTCGGAAGCTAGCTTATGTTGCTGCTGGGGACCTGGCACCTATAAATGCT
TTCATTGGGGGCCTCGCTGCCCAGGAAGTCATGAAGGCCTGTTCTGGAAAGTTTATGCCCATCA
TGCAGTGGTTGTACTTTGATGCTCTTGAATGTCTCCCAGAGGACAAAGAGGCTCTGACAGAGGA
CAAGTGCCTCCCACGTCAGAACCGTTATGATGGGCAGGTAGCTGTATTTGGCTCAGACCTTCAA
GAGAAGCTGGGCAAGCAAAAGTACTTCCTGGTGGGTGCAGGGGCCATTGGCTGTGAATTGCTCA
AGAACTTTGCCATGATTGGGTTAGGCTGTGGAGAGGGTGGAGAGGTCGTGGTCACAGACATGGA
CACCATTGAGAAATCGAATCTGAACCGACAGTTTCTTTTCCGGCCCTGGGATGTCACGAAGTTA
AAGTCTGACACGGCCGCTGCAGCTGTGCGACAGATGAATCCTTACATCCAGGTGACAAGCCACC
AGAACCGTGTAGGCCCTGACACGGAGCGCATCTATGATGATGATTTTTTCCAAAATTTGGATGG
TGTGGCCAATGCACTGGACAATGTAGATGCCCGGATGTACATGGATCGCCGCTGTGTGTACTAT
CGGAAGCCACTGCTAGAGTCTGGCACACTGGGCACAAAGGGCAATGTGCAGGTGGTGATCCCCT
TCCTGACAGAATCATACAGCTCTAGCCAGGACCCACCAGAGAAATCCATCCCCATTTGTACCCT
GAAAAACTTTCCCAATGCCATCGAACACACTCTACAGTGGGCCCGGGATGAATTTGAAGGCCTT
TTCAAGCAGCCAGCAGAAAATGTTAATCAGTACCTCACAGACTCCAAATTTGTGGAGCGGACAT
TGCGGCTGGCGGGTACCCAGCCATTGGAGGTGCTGGAGGCTGTGCAGCGCAGCCTGGTGCTGCA
GCGACCACAGACTTGGGGCGACTGTGTGACCTGGGCCTGCCACCACTGGCACACCCAGTACTGT
AACAACATACGGCAGCTGCTGCACAACTTTCCTCCCGACCAGCTCACCAGCTCAGGGGCCCCTT
TCTGGTCTGGACCCAAACGATGTCCACACCCACTTACTTTTGATGTTAACAATACATTGCATCT
GGATTATGTGATGGCTGCTGCCAACCTTTTTGCCCAGACCTATGGGTTGACTGGCTCCCAAGAC
CGAGCTGCTGTGGCCTCACTCCTACAGTCAGTACAAGTTCCAGAGTTCACCCCCAAGTCTGGTG
TCAAGATCCATGTTTCTGACCAGGAGTTGCAGAGCGCCAATGCCTCTGTTGATGACAGCCGTCT
CGAGGAGCTCAAAGCCACACTGCCGAGCCCAGACAAGTTACCTGGATTTAAGATGTACCCCATT
GATTTTGAAAAGGACGATGACAGCAATTTCCACATGGATTTCATTGTGGCTGCATCTAATCTTC
GGGCCGAAAACTATGATATTTCCCCTGCAGACCGGCACAAGAGCAAGCTGATCGCAGGGAAGAT
CATCCCAGCTATCGCCACAACCACAGCTGCTGTGGTTGGCCTTGTGTGTCTGGAACTCTACAAG
GTAGTTCAGGGGCACCAACAACTTGATTCCTACAAAAATGGTTTCCTGAATTTGGCCCTGCCCT
TCTTTGGGTTTTCGGAACCTCTTGCTGCGCCTCGTCACCAGTACTATAATCAAGAGTGGACATT
GTGGGATCGCTTTGAAGTACAAGGGCTACAGCCTAATGGTGAGGAGATGACTCTCAAGCAGTTC
CTTGATTACTTTAAGACGGAGCACAAATTAGAGATCACCATGCTGTCCCAGGGTGTGTCCATGC
TCTATTCTTTCTTCATGCCAGCTGCTAAGCTCAAGGAACGGTTGGATCAGCCGATGACAGAGAT
TGTGAGCCGAGTGTCAAAGAGAAAGCTGGGCCGCCATGTGCGTGCACTGGTGCTTGAGCTGTGC
TGCAACGATGAAAGTGGCGAGGACGTCGAGGTCCCCTATGTACGATATACAATTCGCTGATCTC
CATGAATTCCCCTAAGCCCTAGTCCCCCTACCCCCCAGATCCTTTCCAGTCCTGGTTTCCATTT
GGCCTCAGGCAGTGGTCCATCTAGCCAAGCCTGGACTTCCCTTATCACCCAGCAACCTCAAGAT
CCTCTCACCACTGCTTTGTACCTTGTTTGGAACCTAAATCCCAATAAAAAAAAGATAACCCAGA
TATAGCCATCTTGGCTGTCTCCAGGGAAGGAAGGAA

hide sequence

RefSeq Acc Id:

XM_063280005 ⟹ XP_063136075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	4,062,216 - 4,084,036 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014102	(Get FASTA)	NCBI Sequence Viewer
	XP_006256674	(Get FASTA)	NCBI Sequence Viewer
	XP_006256675	(Get FASTA)	NCBI Sequence Viewer
	XP_063136075	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52171	(Get FASTA)	NCBI Sequence Viewer
	AAH85791	(Get FASTA)	NCBI Sequence Viewer
	EDL97701	(Get FASTA)	NCBI Sequence Viewer
	EDL97702	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000084488
GenBank Protein	Q5U300	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014102 ⟸ NM_001014080

- UniProtKB:

Q5U300 (UniProtKB/Swiss-Prot), A0A8L2QII5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSSPLSKKRRVSGPDPKPGSNCSSAQSVLSEVSSVPTNGMAKNGSEADIDESLYSRQLYVLGH
EAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTTQWADLSSQFYLREEDIGKNRA
EVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNSPLEEQLRVGEFCHSRGIKLVVADTR
GLFGQLFCDFGEEMVLTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSFSEVQGM
VQLNGCQPIEIKVLGPYTFSICDTSNFSDYIRGGIVSQVKVPKKISFKSLPASLAEPDFVMTDF
AKYSRPAQLHIGFQALHQFCAQHNRPPRPRNEEDATELVTLAQAVNARSPPAVQQDNVDEDLIR
KLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFMPIMQWLYFDALECLPEDKEALTEDKCLPRQ
NRYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEVVVTDMDTIEKSN
LNRQFLFRPWDVTKLKSDTAAAAVRQMNPYIQVTSHQNRVGPDTERIYDDDFFQNLDGVANALD
NVDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNFPNA
IEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQTWG
DCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAA
ANLFAQTYGLTGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDSRLEELKAT
LPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIPAIAT
TTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEV
QGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSK
RKLGRHVRALVLELCCNDESGEDVEVPYVRYTIR

hide sequence

RefSeq Acc Id:	XP_006256675 ⟸ XM_006256613
- Peptide Label:	isoform X1
- UniProtKB:	Q5U300 (UniProtKB/Swiss-Prot), A0A8L2QII5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSSPLSKKRRVSGPDPKPGSNCSSAQSVLSEVSSVPTNGMAKNGSEADIDESLYSRQLYVLGH EAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTTQWADLSSQFYLREEDIGKNRA EVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNSPLEEQLRVGEFCHSRGIKLVVADTR GLFGQLFCDFGEEMVLTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSFSEVQGM VQLNGCQPIEIKVLGPYTFSICDTSNFSDYIRGGIVSQVKVPKKISFKSLPASLAEPDFVMTDF AKYSRPAQLHIGFQALHQFCAQHNRPPRPRNEEDATELVTLAQAVNARSPPAVQQDNVDEDLIR KLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFMPIMQWLYFDALECLPEDKEALTEDKCLPRQ NRYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEVVVTDMDTIEKSN LNRQFLFRPWDVTKLKSDTAAAAVRQMNPYIQVTSHQNRVGPDTERIYDDDFFQNLDGVANALD NVDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNFPNA IEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQTWG DCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAA ANLFAQTYGLTGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDSRLEELKAT LPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIPAIAT TTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEV QGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSK RKLGRHVRALVLELCCNDESGEDVEVPYVRYTIR hide sequence

RefSeq Acc Id:	XP_006256674 ⟸ XM_006256612
- Peptide Label:	isoform X1
- UniProtKB:	Q5U300 (UniProtKB/Swiss-Prot), A0A8L2QII5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSSPLSKKRRVSGPDPKPGSNCSSAQSVLSEVSSVPTNGMAKNGSEADIDESLYSRQLYVLGH EAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTTQWADLSSQFYLREEDIGKNRA EVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNSPLEEQLRVGEFCHSRGIKLVVADTR GLFGQLFCDFGEEMVLTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSFSEVQGM VQLNGCQPIEIKVLGPYTFSICDTSNFSDYIRGGIVSQVKVPKKISFKSLPASLAEPDFVMTDF AKYSRPAQLHIGFQALHQFCAQHNRPPRPRNEEDATELVTLAQAVNARSPPAVQQDNVDEDLIR KLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFMPIMQWLYFDALECLPEDKEALTEDKCLPRQ NRYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEVVVTDMDTIEKSN LNRQFLFRPWDVTKLKSDTAAAAVRQMNPYIQVTSHQNRVGPDTERIYDDDFFQNLDGVANALD NVDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNFPNA IEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQTWG DCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAA ANLFAQTYGLTGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDSRLEELKAT LPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIPAIAT TTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEV QGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSK RKLGRHVRALVLELCCNDESGEDVEVPYVRYTIR hide sequence

Ensembl Acc Id:

ENSRNOP00000033950 ⟸ ENSRNOT00000031115

Ensembl Acc Id:

ENSRNOP00000084488 ⟸ ENSRNOT00000085338

RefSeq Acc Id:	XP_063136075 ⟸ XM_063280005
- Peptide Label:	isoform X1
- UniProtKB:	Q5U300 (UniProtKB/Swiss-Prot), A0A8L2QII5 (UniProtKB/TrEMBL)

Protein Domains

Ubiquitin-activating enzyme E1 C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U300-F1-model_v2	AlphaFold	Q5U300	1-1058	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701695

Promoter ID:

EPDNEW_R12219

Type:

multiple initiation site

Name:

Uba1_1

Description:

ubiquitin-like modifier activating enzyme 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	1,741,665 - 1,741,725	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359327	AgrOrtholog
BioCyc Gene	G2FUF-3188	BioCyc
BioCyc Pathway	PWY-7511 [protein ubiquitination]	BioCyc
BioCyc Pathway Image	PWY-7511	BioCyc
Ensembl Genes	ENSRNOG00000019164	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000085338	ENTREZGENE
Gene3D-CATH	1.10.10.2660	UniProtKB/Swiss-Prot
	2.40.30.180	UniProtKB/Swiss-Prot
	3.10.290.60	UniProtKB/Swiss-Prot
	3.50.50.80	UniProtKB/Swiss-Prot
	NAD(P)-binding Rossmann-like Domain	UniProtKB/Swiss-Prot
	Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7109118	IMAGE-MGC_LOAD
InterPro	E1_4HB	UniProtKB/Swiss-Prot
	E1_FCCH	UniProtKB/Swiss-Prot
	E1_FCCH_sf	UniProtKB/Swiss-Prot
	ThiF/MoeB/HesA	UniProtKB/Swiss-Prot
	ThiF_NAD_FAD-bd	UniProtKB/Swiss-Prot
	Ub-activating_enz_E1_C	UniProtKB/Swiss-Prot
	Ub-E1_IAD_1	UniProtKB/Swiss-Prot
	UBA_E1_C_sf	UniProtKB/Swiss-Prot
	UBA_E1_Cys	UniProtKB/Swiss-Prot
	Ubi_acti_E1_SCCH	UniProtKB/Swiss-Prot
	Ubiquitin-activating_enz	UniProtKB/Swiss-Prot
	UBQ-activ_enz_E1	UniProtKB/Swiss-Prot
	UBQ-activ_enz_E1_CS	UniProtKB/Swiss-Prot
	UBQ-activ_enz_E1_Cys_AS	UniProtKB/Swiss-Prot
	UBQ/SUMO-activ_enz_E1-like	UniProtKB/Swiss-Prot
KEGG Report	rno:314432	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93773	IMAGE-MGC_LOAD
NCBI Gene	314432	ENTREZGENE
PANTHER	PTHR10953	UniProtKB/Swiss-Prot
	UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 1	UniProtKB/Swiss-Prot
Pfam	E1_4HB	UniProtKB/Swiss-Prot
	E1_FCCH	UniProtKB/Swiss-Prot
	E1_UFD	UniProtKB/Swiss-Prot
	ThiF	UniProtKB/Swiss-Prot
	UBA_e1_thiolCys	UniProtKB/Swiss-Prot
PhenoGen	Uba1	PhenoGen
PRINTS	UBIQUITINACT	UniProtKB/Swiss-Prot
PROSITE	UBIQUITIN_ACTIVAT_1	UniProtKB/Swiss-Prot
	UBIQUITIN_ACTIVAT_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000019164	RatGTEx
SMART	UBA_e1_C	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF69572	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZY80_RAT	UniProtKB/TrEMBL
	A0A8L2QII5	ENTREZGENE, UniProtKB/TrEMBL
	Q5U300	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-06-27			Uba1	ubiquitin-like modifier activating enzyme 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Uba1	ubiquitin-like modifier activating enzyme 1	Ube1x	ubiquitin-activating enzyme E1, Chr X	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2007-09-11	Ube1x	ubiquitin-activating enzyme E1, Chr X	LOC314432	similar to ubiquitin-protein ligase (EC 6.3.2.19) E1 - mouse	Symbol and Name updated to reflect Human and Mouse nomenclature	1299863	APPROVED
2005-07-29	LOC314432	similar to ubiquitin-protein ligase (EC 6.3.2.19) E1 - mouse			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways