Gmcl1 (germ cell-less 1, spermatogenesis associated) - Rat Genome Database

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Gene: Gmcl1 (germ cell-less 1, spermatogenesis associated) Rattus norvegicus
Analyze
Symbol: Gmcl1
Name: germ cell-less 1, spermatogenesis associated
RGD ID: 1359265
Description: Predicted to enable identical protein binding activity. Predicted to be involved in germ cell development and spermatogenesis. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be located in nuclear envelope and nuclear matrix. Predicted to be active in nucleus. Orthologous to several human genes including GMCL1 (germ cell-less 1, spermatogenesis associated); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Gcl; germ cell-less homolog 1; germ cell-less homolog 1 (Drosophila); germ cell-less protein; germ cell-less protein-like 1; germ cell-less, spermatogenesis associated 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gmcl1-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,697,976 - 120,737,267 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4120,697,976 - 120,737,257 (-)EnsemblGRCr8
mRatBN7.24119,140,598 - 119,179,891 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,140,598 - 119,179,881 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4124,613,320 - 124,652,539 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,388,053 - 120,427,272 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04119,012,316 - 119,051,537 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,494,997 - 118,534,301 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,478,075 - 118,534,280 (-)Ensemblrn6Rnor6.0
Rnor_5.04183,065,011 - 183,104,417 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44120,845,606 - 120,885,122 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4108,110,660 - 108,149,940 (-)NCBICelera
RGSC_v3.14121,095,689 - 121,129,398 (-)NCBI
Cytogenetic Map4q34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear envelope  (IEA,ISO)
nuclear matrix  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Mouse germ cell-less as an essential component for nuclear integrity. Kimura T, etal., Mol Cell Biol 2003 Feb;23(4):1304-15.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10727854   PMID:11591818   PMID:12927808   PMID:12954656   PMID:15700541   PMID:27107012  


Genomics

Comparative Map Data
Gmcl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,697,976 - 120,737,267 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4120,697,976 - 120,737,257 (-)EnsemblGRCr8
mRatBN7.24119,140,598 - 119,179,891 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,140,598 - 119,179,881 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4124,613,320 - 124,652,539 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,388,053 - 120,427,272 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04119,012,316 - 119,051,537 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,494,997 - 118,534,301 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,478,075 - 118,534,280 (-)Ensemblrn6Rnor6.0
Rnor_5.04183,065,011 - 183,104,417 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44120,845,606 - 120,885,122 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4108,110,660 - 108,149,940 (-)NCBICelera
RGSC_v3.14121,095,689 - 121,129,398 (-)NCBI
Cytogenetic Map4q34NCBI
GMCL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38269,829,660 - 69,881,384 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl269,829,646 - 69,881,384 (+)Ensemblhg38GRCh38
GRCh37270,056,792 - 70,108,516 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36269,910,322 - 69,960,231 (+)NCBIBuild 36Build 36hg18NCBI36
Celera269,907,998 - 69,957,903 (+)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef269,792,818 - 69,842,714 (+)NCBIHuRef
CHM1_1269,986,447 - 70,036,380 (+)NCBICHM1_1
T2T-CHM13v2.0269,841,928 - 69,893,666 (+)NCBIT2T-CHM13v2.0
Gmcl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,668,750 - 86,710,377 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl686,668,750 - 86,710,365 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38686,691,768 - 86,733,395 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,691,768 - 86,733,383 (-)Ensemblmm10GRCm38
MGSCv37686,641,762 - 86,683,372 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36686,657,404 - 86,698,988 (-)NCBIMGSCv36mm8
Celera688,630,051 - 88,672,978 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.75NCBI
Gmcl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542415,266,022 - 15,318,209 (-)Ensembl
ChiLan1.0NW_00495542415,265,052 - 15,318,445 (-)NCBIChiLan1.0ChiLan1.0
GMCL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21256,529,529 - 56,584,252 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A56,533,448 - 56,585,188 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A69,872,537 - 69,924,175 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A70,990,081 - 71,041,510 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A70,990,117 - 71,040,526 (+)EnsemblpanPan2panpan1.1
GMCL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11068,469,369 - 68,525,961 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1068,359,940 - 68,416,408 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01069,492,055 - 69,547,395 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1069,492,155 - 69,546,205 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,210,379 - 69,266,835 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01069,473,237 - 69,529,769 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01069,770,701 - 69,827,380 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gmcl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629214,472,622 - 14,519,680 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649114,051,542 - 14,098,738 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649114,051,538 - 14,097,765 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GMCL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1372,570,426 - 72,619,696 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,965,018 - 76,057,340 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GMCL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11437,242,401 - 37,294,917 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1437,241,305 - 37,294,655 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604574,703,174 - 74,757,063 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gmcl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,522,534 - 3,558,748 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247623,522,534 - 3,558,750 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gmcl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1659,577,777 - 59,617,459 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gmcl1
86 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:86
Interacting mature miRNAs:110
Transcripts:ENSRNOT00000024414
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat

Markers in Region
RH128814  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24119,140,704 - 119,140,888 (+)MAPPERmRatBN7.2
Rnor_6.04118,495,104 - 118,495,287NCBIRnor6.0
Rnor_5.04183,065,118 - 183,065,301UniSTSRnor5.0
RGSC_v3.44120,845,709 - 120,845,892UniSTSRGSC3.4
Celera4108,110,767 - 108,110,950UniSTS
RH 3.4 Map4697.4UniSTS
Cytogenetic Map4q34UniSTS
RH137460  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24119,163,352 - 119,163,545 (+)MAPPERmRatBN7.2
Rnor_6.04118,517,751 - 118,517,943NCBIRnor6.0
Rnor_5.04183,087,763 - 183,087,955UniSTSRnor5.0
RGSC_v3.44120,868,393 - 120,868,585UniSTSRGSC3.4
Celera4108,133,412 - 108,133,604UniSTS
Cytogenetic Map4q34UniSTS
AI232351  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24119,141,273 - 119,141,390 (+)MAPPERmRatBN7.2
Rnor_6.04118,495,673 - 118,495,789NCBIRnor6.0
Rnor_5.04183,065,687 - 183,065,803UniSTSRnor5.0
RGSC_v3.44120,846,278 - 120,846,394UniSTSRGSC3.4
Celera4108,111,336 - 108,111,452UniSTS
RH 3.4 Map4697.0UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


RefSeq Acc Id: NM_001010956   ⟹   NP_001010956
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,703,583 - 120,737,257 (-)NCBI
mRatBN7.24119,146,205 - 119,179,881 (-)NCBI
Rnor_6.04118,500,604 - 118,534,278 (-)NCBI
Rnor_5.04183,065,011 - 183,104,417 (-)NCBI
RGSC_v3.44120,845,606 - 120,885,122 (-)RGD
Celera4108,116,267 - 108,149,940 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001033931   ⟹   NP_001029103
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,697,976 - 120,737,257 (-)NCBI
mRatBN7.24119,140,598 - 119,179,881 (-)NCBI
Rnor_6.04118,494,997 - 118,534,278 (-)NCBI
Rnor_5.04183,065,011 - 183,104,417 (-)NCBI
RGSC_v3.44120,845,606 - 120,885,122 (-)RGD
Celera4108,110,660 - 108,149,940 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006236832   ⟹   XP_006236894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,697,976 - 120,737,266 (-)NCBI
mRatBN7.24119,140,598 - 119,179,887 (-)NCBI
Rnor_6.04118,494,997 - 118,534,301 (-)NCBI
Rnor_5.04183,065,011 - 183,104,417 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010065645
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,710,614 - 120,737,267 (-)NCBI
RefSeq Acc Id: NP_001029103   ⟸   NM_001033931
- Peptide Label: isoform 1
- UniProtKB: Q5I287 (UniProtKB/TrEMBL),   A6IAZ0 (UniProtKB/TrEMBL),   A0A0G2K533 (UniProtKB/TrEMBL),   F7ERJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001010956   ⟸   NM_001010956
- Peptide Label: isoform 2
- UniProtKB: Q5I286 (UniProtKB/TrEMBL),   A0A0G2K533 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236894   ⟸   XM_006236832
- Peptide Label: isoform X1
- UniProtKB: A0A8I6B2P7 (UniProtKB/TrEMBL),   A0A0G2K533 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K533-F1-model_v2 AlphaFold A0A0G2K533 1-537 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693219
Promoter ID:EPDNEW_R3738
Type:multiple initiation site
Name:Gmcl1_2
Description:germ cell-less, spermatogenesis associated 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3737  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04118,534,226 - 118,534,286EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359265 AgrOrtholog
BioCyc Gene G2FUF-43884 BioCyc
Ensembl Genes ENSRNOG00000017838 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024414 ENTREZGENE
  ENSRNOT00000024414.7 UniProtKB/TrEMBL
  ENSRNOT00000104724.2 UniProtKB/TrEMBL
  ENSRNOT00000118148 ENTREZGENE
  ENSRNOT00000118148.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Gcl-like UniProtKB/TrEMBL
KEGG Report rno:312516 UniProtKB/TrEMBL
NCBI Gene 312516 ENTREZGENE
PANTHER GERM CELL-LESS PROTEIN-LIKE 1 UniProtKB/TrEMBL
  PTHR23231 UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
PhenoGen Gmcl1 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017838 RatGTEx
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
UniProt A0A0G2K533 ENTREZGENE
  A0A8I6AN78_RAT UniProtKB/TrEMBL
  A0A8I6B2P7 ENTREZGENE, UniProtKB/TrEMBL
  A6IAZ0 ENTREZGENE, UniProtKB/TrEMBL
  A6IAZ1_RAT UniProtKB/TrEMBL
  F7ERJ6 ENTREZGENE, UniProtKB/TrEMBL
  Q5I286 ENTREZGENE, UniProtKB/TrEMBL
  Q5I287 ENTREZGENE
UniProt Secondary Q5I287 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Gmcl1  germ cell-less 1, spermatogenesis associated  Gmcl1  germ cell-less, spermatogenesis associated 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-05 Gmcl1  germ cell-less, spermatogenesis associated 1  Gmcl1  germ cell-less homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Gmcl1  germ cell-less homolog 1 (Drosophila)  Gcl  germ cell-less protein  Symbol and Name updated 1299863 APPROVED
2005-07-29 Gcl  germ cell-less protein      Symbol and Name status set to provisional 70820 PROVISIONAL