Zc3h15 (zinc finger CCCH-type containing 15) - Rat Genome Database

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Pathways
Gene: Zc3h15 (zinc finger CCCH-type containing 15) Rattus norvegicus
Analyze
Symbol: Zc3h15
Name: zinc finger CCCH-type containing 15
RGD ID: 1359234
Description: Predicted to enable zinc ion binding activity. Predicted to be involved in cytoplasmic translation and positive regulation of GTPase activity. Predicted to act upstream of or within cytokine-mediated signaling pathway. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human ZC3H15 (zinc finger CCCH-type containing 15); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; finasteride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: brain zinc finger protein; LOC362154; MGC95079; p48ZnF; zinc finger CCCH domain-containing protein 15
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Zc3h15-ps3  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8389,151,432 - 89,171,203 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl389,151,509 - 89,171,202 (+)EnsemblGRCr8
mRatBN7.2368,744,591 - 68,764,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl368,744,604 - 68,764,333 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx372,147,117 - 72,166,722 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0380,745,773 - 80,765,378 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0378,480,214 - 78,499,776 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd386,982,019 - 87,003,441 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive393,904,375 - 93,925,797 (+)NCBILyon_Normotensive
Lyon_Hypertensive385,826,732 - 85,848,154 (+)NCBILyon_Hypertensive
F344_StmMcwi367,127,564 - 67,148,986 (+)NCBIF344_StmMcwi
Rnor_6.0371,020,420 - 71,040,159 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl371,020,534 - 71,040,157 (+)Ensemblrn6Rnor6.0
Rnor_5.0377,550,822 - 77,570,544 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4366,821,085 - 66,840,710 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera368,123,487 - 68,143,111 (+)NCBICelera
RGSC_v3.1366,717,456 - 66,737,080 (+)NCBI
Cytogenetic Map3q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Nerve growth factor (NGF) induces mRNA expression of the new transcription factor protein p48ZnF. Heese K, etal., Exp Mol Med 2004 Apr 30;36(2):130-4.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10880228   PMID:22658674   PMID:22681889   PMID:23470633   PMID:23711155   PMID:25468996   PMID:28131823  


Genomics

Comparative Map Data
Zc3h15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8389,151,432 - 89,171,203 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl389,151,509 - 89,171,202 (+)EnsemblGRCr8
mRatBN7.2368,744,591 - 68,764,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl368,744,604 - 68,764,333 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx372,147,117 - 72,166,722 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0380,745,773 - 80,765,378 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0378,480,214 - 78,499,776 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd386,982,019 - 87,003,441 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive393,904,375 - 93,925,797 (+)NCBILyon_Normotensive
Lyon_Hypertensive385,826,732 - 85,848,154 (+)NCBILyon_Hypertensive
F344_StmMcwi367,127,564 - 67,148,986 (+)NCBIF344_StmMcwi
Rnor_6.0371,020,420 - 71,040,159 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl371,020,534 - 71,040,157 (+)Ensemblrn6Rnor6.0
Rnor_5.0377,550,822 - 77,570,544 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4366,821,085 - 66,840,710 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera368,123,487 - 68,143,111 (+)NCBICelera
RGSC_v3.1366,717,456 - 66,737,080 (+)NCBI
Cytogenetic Map3q24NCBI
ZC3H15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382186,486,260 - 186,509,361 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2186,486,222 - 186,511,929 (+)Ensemblhg38GRCh38
GRCh372187,350,987 - 187,374,088 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362187,059,130 - 187,082,333 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2180,946,684 - 180,969,891 (+)NCBICelera
Cytogenetic Map2q32.1NCBI
HuRef2179,210,476 - 179,234,063 (+)NCBIHuRef
CHM1_12187,357,183 - 187,380,391 (+)NCBICHM1_1
T2T-CHM13v2.02186,975,546 - 186,998,651 (+)NCBIT2T-CHM13v2.0
Zc3h15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39283,474,922 - 83,494,961 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl283,474,779 - 83,494,966 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38283,644,578 - 83,664,617 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl283,644,435 - 83,664,622 (+)Ensemblmm10GRCm38
MGSCv37283,484,735 - 83,504,774 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36283,445,417 - 83,465,456 (+)NCBIMGSCv36mm8
Celera285,284,428 - 85,304,248 (+)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.33NCBI
Zc3h15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540311,740,107 - 11,761,005 (-)Ensembl
ChiLan1.0NW_00495540311,740,107 - 11,761,005 (-)NCBIChiLan1.0ChiLan1.0
ZC3H15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21389,161,727 - 89,185,225 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B89,176,974 - 89,200,205 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B73,774,955 - 73,798,061 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B191,576,403 - 191,599,609 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B191,576,403 - 191,599,609 (+)EnsemblpanPan2panpan1.1
ZC3H15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13628,730,213 - 28,743,884 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3628,725,079 - 28,743,884 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3628,627,635 - 28,641,296 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03628,950,239 - 29,009,303 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3628,949,771 - 28,969,725 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13629,014,656 - 29,028,335 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03628,946,032 - 28,959,704 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03629,116,356 - 29,130,029 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zc3h15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303145,903,340 - 145,929,725 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650610,907,697 - 10,934,785 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650610,908,347 - 10,934,785 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC3H15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1591,493,713 - 91,518,760 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11591,493,591 - 91,517,362 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215101,503,541 - 101,527,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZC3H15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11072,020,594 - 72,044,050 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1072,020,808 - 72,043,420 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040127,461,984 - 127,485,862 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zc3h15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248993,394,009 - 3,415,446 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zc3h15
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1561,121,380 - 61,140,760 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zc3h15
88 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:459
Count of miRNA genes:231
Interacting mature miRNAs:279
Transcripts:ENSRNOT00000007276
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
RH140856  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3q24UniSTS
DXS9848  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2368,753,435 - 68,754,836 (+)MAPPERmRatBN7.2
Rnor_6.0371,029,262 - 71,030,662NCBIRnor6.0
Rnor_5.0377,559,647 - 77,561,047UniSTSRnor5.0
RGSC_v3.4366,829,813 - 66,831,213UniSTSRGSC3.4
Celera368,132,215 - 68,133,615UniSTS
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000007276   ⟹   ENSRNOP00000007276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl389,151,509 - 89,171,202 (+)Ensembl
mRatBN7.2 Ensembl368,744,604 - 68,764,330 (+)Ensembl
Rnor_6.0 Ensembl371,020,534 - 71,040,157 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094114   ⟹   ENSRNOP00000090988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl389,158,903 - 89,171,202 (+)Ensembl
mRatBN7.2 Ensembl368,752,033 - 68,764,333 (+)Ensembl
RefSeq Acc Id: NM_001010963   ⟹   NP_001010963
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8389,151,578 - 89,171,203 (+)NCBI
mRatBN7.2368,744,708 - 68,764,335 (+)NCBI
Dahl_SR_JrHsd386,982,019 - 87,003,441 (+)NCBI
Lyon_Normotensive393,904,375 - 93,925,797 (+)NCBI
Lyon_Hypertensive385,826,732 - 85,848,154 (+)NCBI
F344_StmMcwi367,127,564 - 67,148,986 (+)NCBI
Rnor_6.0371,020,534 - 71,040,159 (+)NCBI
Rnor_5.0377,550,822 - 77,570,544 (+)NCBI
RGSC_v3.4366,821,085 - 66,840,710 (+)RGD
Celera368,123,487 - 68,143,111 (+)RGD
Sequence:
RefSeq Acc Id: XR_352425
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8389,151,432 - 89,171,203 (+)NCBI
mRatBN7.2368,744,591 - 68,764,335 (+)NCBI
Rnor_6.0371,020,420 - 71,040,159 (+)NCBI
Rnor_5.0377,550,822 - 77,570,544 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001010963 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88438 (Get FASTA)   NCBI Sequence Viewer  
  AAR24540 (Get FASTA)   NCBI Sequence Viewer  
  EDL79292 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007276
  ENSRNOP00000007276.4
GenBank Protein Q6U6G5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001010963   ⟸   NM_001010963
- UniProtKB: Q6U6G5 (UniProtKB/Swiss-Prot),   A6HMP1 (UniProtKB/TrEMBL),   A0A8I6GIP0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007276   ⟸   ENSRNOT00000007276
Ensembl Acc Id: ENSRNOP00000090988   ⟸   ENSRNOT00000094114
Protein Domains
C3H1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6U6G5-F1-model_v2 AlphaFold Q6U6G5 1-426 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692175
Promoter ID:EPDNEW_R2700
Type:initiation region
Name:Zc3h15_1
Description:zinc finger CCCH-type containing 15
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0371,020,460 - 71,020,520EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359234 AgrOrtholog
BioCyc Gene G2FUF-49199 BioCyc
Ensembl Genes ENSRNOG00000005256 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000007276 ENTREZGENE
  ENSRNOT00000007276.6 UniProtKB/Swiss-Prot
Gene3D-CATH 6.20.400.10 UniProtKB/Swiss-Prot
  Zinc finger, CCCH-type UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7126102 IMAGE-MGC_LOAD
InterPro ZC3H15/TMA46_C UniProtKB/Swiss-Prot
  Znf_CCCH UniProtKB/Swiss-Prot
  Znf_CCCH_sf UniProtKB/Swiss-Prot
KEGG Report rno:362154 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95079 IMAGE-MGC_LOAD
NCBI Gene 362154 ENTREZGENE
PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 UniProtKB/Swiss-Prot
  ZINC FINGER-CONTAINING PROTEIN P48ZNF UniProtKB/Swiss-Prot
Pfam DFRP_C UniProtKB/Swiss-Prot
  zf-CCCH UniProtKB/Swiss-Prot
PhenoGen Zc3h15 PhenoGen
PROSITE ZF_C3H1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005256 RatGTEx
SMART ZnF_C3H1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF90229 UniProtKB/Swiss-Prot
UniProt A0A8I6GIP0 ENTREZGENE, UniProtKB/TrEMBL
  A6HMP1 ENTREZGENE, UniProtKB/TrEMBL
  Q6U6G5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Zc3h15  zinc finger CCCH-type containing 15  LOC362154  brain zinc finger protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC362154  brain zinc finger protein      Symbol and Name status set to provisional 70820 PROVISIONAL