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Gene: Akap8l (A-kinase anchoring protein 8 like) Rattus norvegicus

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Symbol:

Akap8l

Name:

A-kinase anchoring protein 8 like

RGD ID:

1359200

Description:

Predicted to enable histone deacetylase binding activity; lamin binding activity; and protein kinase A regulatory subunit binding activity. Predicted to be involved in several processes, including cell cycle G2/M phase transition; mitotic chromosome condensation; and regulation of mRNA export from nucleus. Predicted to be located in chromatin; cytoplasm; and nuclear speck. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nuclear matrix. Orthologous to human AKAP8L (A-kinase anchoring protein 8 like); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

A kinase (PRKA) anchor protein 8-like; A-kinase anchor protein 8-like; LOC299569; similar to NAKAP95

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AKAP8L (A-kinase anchoring protein 8 like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Akap8l (A kinase anchor protein 8-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Akap8l (A-kinase anchoring protein 8 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AKAP8L (A-kinase anchoring protein 8 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AKAP8L (A-kinase anchoring protein 8 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Akap8l (A-kinase anchoring protein 8 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AKAP8L (A-kinase anchoring protein 8 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AKAP8L (A-kinase anchoring protein 8 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Akap8l (A-kinase anchoring protein 8 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	AKAP8L (A-kinase anchoring protein 8 like)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Akap8l (A kinase anchor protein 8-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	akap8l (A kinase (PRKA) anchor protein 8-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	akap8l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	akap8l	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	11,983,215 - 12,012,843 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	11,982,721 - 12,012,811 (-)	Ensembl				GRCr8
mRatBN7.2	7	11,332,671 - 11,362,287 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	11,332,672 - 11,362,275 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	14,151,159 - 14,180,750 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	16,028,581 - 16,058,168 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	13,900,096 - 13,929,674 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	14,340,168 - 14,369,835 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	14,340,170 - 14,369,821 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	14,494,264 - 14,524,003 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	12,889,649 - 12,919,236 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	9,443,795 - 9,473,308 (-)	NCBI		Celera
RGSC_v3.1	7	12,889,649 - 12,919,236 (-)	NCBI
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (EXP)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (EXP,ISO)

buspirone (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

chlorpyrifos (EXP)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

DDE (ISO)

deguelin (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

diethylstilbestrol (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

flutamide (EXP)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (EXP)

imidacloprid (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methamphetamine (ISO)

methidathion (ISO)

methimazole (EXP)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

nefazodone (EXP)

nitrates (ISO)

ozone (EXP,ISO)

paracetamol (EXP,ISO)

pirinixic acid (EXP)

pregnenolone 16alpha-carbonitrile (EXP)

rac-lactic acid (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tetraphene (ISO)

thapsigargin (ISO)

thiabendazole (EXP)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell cycle G2/M phase transition (IEA,ISO)

mitotic chromosome condensation (IBA,IEA,ISO)

mRNA processing (IEA,ISO)

nuclear membrane disassembly (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of mRNA export from nucleus (IEA,ISO)

Cellular Component

chromatin (IEA,ISO)

cytoplasm (IEA,ISO)

nuclear matrix (IBA,IEA,ISO)

nuclear speck (IEA,ISO)

nucleus (IBA,IEA,ISO)

ribonucleoprotein complex (IEA,ISO)

Molecular Function

DNA binding (IEA)

histone deacetylase binding (IEA,ISO)

lamin binding (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

protein kinase A regulatory subunit binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:11034899	PMID:11402034	PMID:11884601	PMID:16391387	PMID:16980585	PMID:17594903	PMID:22658674	PMID:22681889	PMID:31505169

Genomics

Comparative Map Data

Akap8l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	11,983,215 - 12,012,843 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	11,982,721 - 12,012,811 (-)	Ensembl				GRCr8
mRatBN7.2	7	11,332,671 - 11,362,287 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	11,332,672 - 11,362,275 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	14,151,159 - 14,180,750 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	16,028,581 - 16,058,168 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	13,900,096 - 13,929,674 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	14,340,168 - 14,369,835 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	14,340,170 - 14,369,821 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	14,494,264 - 14,524,003 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	12,889,649 - 12,919,236 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	9,443,795 - 9,473,308 (-)	NCBI		Celera
RGSC_v3.1	7	12,889,649 - 12,919,236 (-)	NCBI
Cytogenetic Map	7	q11	NCBI

AKAP8L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	15,380,050 - 15,418,988 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	15,380,050 - 15,419,141 (-)	Ensembl			hg38	GRCh38
GRCh37	19	15,490,861 - 15,529,799 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	15,351,859 - 15,390,833 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	15,351,858 - 15,390,833	NCBI
Celera	19	15,386,496 - 15,425,477 (-)	NCBI		Celera
Cytogenetic Map	19	p13.12	NCBI
HuRef	19	15,058,829 - 15,097,763 (-)	NCBI		HuRef
CHM1_1	19	15,490,499 - 15,529,470 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	15,505,027 - 15,543,979 (-)	NCBI		T2T-CHM13v2.0

Akap8l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	32,540,398 - 32,569,589 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	32,540,398 - 32,569,581 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	32,321,424 - 32,350,616 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	32,321,424 - 32,350,607 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	32,458,369 - 32,487,522 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	32,053,032 - 32,082,199 (-)	NCBI		MGSCv36	mm8
Celera	17	33,242,263 - 33,271,406 (-)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	17.5	NCBI

Akap8l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	7,839,339 - 7,874,432 (+)	Ensembl
ChiLan1.0	NW_004955495	7,839,339 - 7,874,432 (+)	NCBI	ChiLan1.0	ChiLan1.0

AKAP8L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	20,293,841 - 20,332,210 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	19,296,597 - 19,334,983 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	14,912,960 - 14,950,479 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	15,897,896 - 15,936,684 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	15,897,969 - 15,936,486 (-)	Ensembl			panPan2	panpan1.1

AKAP8L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	46,773,585 - 46,800,544 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	46,747,062 - 46,817,240 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	46,621,143 - 46,648,110 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	47,260,225 - 47,287,202 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	47,232,152 - 47,287,197 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	46,495,088 - 46,522,051 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	46,911,738 - 46,938,694 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	47,185,246 - 47,212,220 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Akap8l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	205,539,079 - 205,574,596 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	5,088,361 - 5,123,649 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	5,088,260 - 5,123,735 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AKAP8L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	62,184,763 - 62,221,935 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	62,184,735 - 62,241,631 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	61,760,062 - 61,797,260 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AKAP8L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	13,987,731 - 14,023,130 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	13,987,736 - 14,023,148 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666074	5,484,922 - 5,520,168 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Akap8l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624901	2,472,029 - 2,508,129 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624901	2,471,957 - 2,508,248 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Akap8l
260 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	71
Interacting mature miRNAs:	76
Transcripts:	ENSRNOT00000008560
Prediction methods:	Microtar, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat

Markers in Region

RH133817

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	11,332,819 - 11,333,001 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	14,340,317 - 14,340,498	NCBI	Rnor6.0
Rnor_5.0	7	14,494,413 - 14,494,594	UniSTS	Rnor5.0
RGSC_v3.4	7	12,889,797 - 12,889,978	UniSTS	RGSC3.4
Celera	7	9,443,943 - 9,444,124	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001838673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC085785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008560 ⟹ ENSRNOP00000008560

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	11,982,721 - 12,012,811 (-)	Ensembl
mRatBN7.2 Ensembl	7	11,332,672 - 11,362,275 (-)	Ensembl
Rnor_6.0 Ensembl	7	14,340,170 - 14,369,821 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090673 ⟹ ENSRNOP00000071522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	11,332,672 - 11,356,629 (-)	Ensembl
Rnor_6.0 Ensembl	7	14,340,236 - 14,364,178 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110147 ⟹ ENSRNOP00000092015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	11,983,028 - 12,007,068 (-)	Ensembl
mRatBN7.2 Ensembl	7	11,332,672 - 11,356,529 (-)	Ensembl

RefSeq Acc Id:

NM_001013946 ⟹ NP_001013968

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,983,216 - 12,012,811 (-)	NCBI
mRatBN7.2	7	11,332,672 - 11,362,273 (-)	NCBI
Rnor_6.0	7	14,340,169 - 14,369,821 (-)	NCBI
Rnor_5.0	7	14,494,264 - 14,524,003 (-)	NCBI
RGSC_v3.4	7	12,889,649 - 12,919,236 (-)	RGD
Celera	7	9,443,795 - 9,473,308 (-)	RGD

Sequence:

show sequence

GTGTGGAAGGACCCCAGGGATTGTTGTGGCGTCAGACGCGCAGAGTAGCGGTCTGTGTCCAAGG
CTCGGGTGTTCTCTGCGGCCATGAGCTACACAGGCTTTGTCCAAGGATCCGAAACCACTTTGCA
GTCTACCTACTGTGACACCAGTGCCCAGCCCACCTGTGATTATGGATATGGAACTTGGAACTCT
GGGACAAATAGAGGCTACGAGAACTATGGTTATGGCTATGGCTATGGCCAGGATAACACCACCA
ACTATGGGTATGGTATGGCCACTTCACACTCTTGGGAAATGGCTAACTCTGACACAAATGCAAA
CCCTAGTGCCTCGGGTAGCGCCAGTGCCGATTCCGTTTTATCCAGAATTAACCAGCGCTTAGAT
ATGATGCCACACTTGGAGACAGACATGATACAAGGAGGTGTGTACGGCTCAGGTGGTGGAGAAA
GATATGATTCCTATGAGGCCTGTGACTCAAGGGCCATCCTGAGTGAACGAGACCTCTACCGGTC
GAGCTATGACTATGGCGAGCTTGACCCTGAGATGGAAATGGCCTATGAGGGTCAATATGATGCC
TACCGTGACCAGTTTCGAATGCGTGGAGGAGATACATTTGGTCCAAGGGCTCAGGGCTGGGCCC
GGGATGCCCGGAGTGGACGGCCAATGGCCTCGGGCTATGGGCGCATGTGGGAAGACCCCATGGG
GGCCCGGGGCCAGTGCATGCCTGGTGCCTCCCGGCTGCCCTCCCTCTTCTCCCAGAACATCATA
CCCGAGTATGGCATGTTCCAGGGCATGCGTGGTGGGGGTGCCTTCTCTGGTGGCTCCCGATTTG
GCTTCGGATTTGGCAATGGCATGAAGCAGATGAGGCGGACCTGGAAGACCTGGACCACAGCGGA
CTTCCGGACCAAAAAGAAGAAGAGAAAGCAGGGTGGCAGTCCTGATGAGCCAGACTGCAAGGCT
ACCAGAACAGACTGCTCAGACAACAGTGACTCAGACAACGATGAAGGTACTGAGGGGGAAGCTG
CAGAGGGTGCTGAAAGTGCTGAGGCTCTGGAGAAAGGCTCCCGAGCAGAAGGAGAGGACGAGGA
GGGAAAAGAAGATGGGAGAGAAGAAGGCAAAGAAGATTTGGAGAAAGGGGCCCTGACCGCCCAG
GATGAGAGCAGCCAGGCCAAGCGCAAGTTGCAGGCAAGCAAGAAGAGCCAAGACAAACAGAAAA
AGCGGCAGCGGGACCGTATGGTGGAAAGGATCCAGTTTGTCTGTTCTCTCTGCAAATACCGGAC
CTTCTATGAAGACGAGATGGGTAGCCACCTTGATAGCAAGTTCCACAAGGAACACTTCAAATAT
GTAGGCACCAAGCTTCCCAAGCAGACAGCTGACTTTCTGCAGGACTATGTCACCAACAAGACCA
AGAAGACAGAGGAGCTCCGAAAAACTGTAGAGGACCTTGATGGTCTGATCCAACAAATCTACAG
AGACCAAGATCTGACCCAAGAAATTGCTATGGAGCATTTTGTGAAGAAGGTGGAGGCGGCCCAT
TGTGCAGCCTGTGACCTTTTCATCCCCATGCAGTTTGGAATCATCCAAAAGCATCTCAAGACTA
TGGATCACAACCGAAACCGCAGGCTCATGATGGAGCAGTCCAAGAAGTCCTCGCTTATGGTGGC
ACGCAGTATTCTGAACAACAAGCTCATTAGCAAGAAGCTGGAGCGATATCTTAAGGGCGAGAAT
CCTTTTACTGACAACCCGGAGGAGGAGAAGGAACAAGACGAGGTGGAGGCTGGCGCTCTGGAAG
AAGGGGCACCAAGCGAAGCGACAGGGCTCACAGAAGGCGTGTCGGTCCAGCCCCCGGTGCCCCT
GGAGCCCACCCCGGGGACTGCAACACCGCCACCTCCGCCACCACCAGAGGAGGAGAACCCAGTA
CCCTTGCTGGGCGGGGCGCTACAGTGCCAGATCCGCGGGATCCCGGGGCTCGACGTAGAAGACG
ACGAGGAGGGCGGTGGGGGTCCTTAACCCTTACCGGGCACGGCTCGCGTAGCCGAGGCTGGAAA
TCCAGCCTAATAAAGTGCTTTCCCACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006241054 ⟹ XP_006241116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,983,215 - 12,012,843 (-)	NCBI
mRatBN7.2	7	11,332,671 - 11,362,287 (-)	NCBI
Rnor_6.0	7	14,340,168 - 14,369,835 (-)	NCBI
Rnor_5.0	7	14,494,264 - 14,524,003 (-)	NCBI

Sequence:

show sequence

CGGGGCTGGGGCGTGTGTGGAAGGACCCCAGGGATTGTTGTGGCGTCAGACGCGCAGAGTAGCG
GTCTGTGTCCAAGGCTCGGGTGTTCTCTGCGGCCATGAGCTACACAGGCTTTGTCCAAGGATCC
GAAACCACTTTGCAGTCTACCTACTGTGACACCAGTGCCCAGCCCACCTGTGATTATGGATATG
GAACTTGGAACTCTGGGACAAATAGAGGCTACGAGAACTATGGTTATGGCTATGGCTATGGCCA
GGATAACACCACCAACTATGGAATTAACCAGCGCTTAGATATGATGCCACACTTGGAGACAGAC
ATGATACAAGGAGGTGTGTACGGCTCAGGTGGTGGAGAAAGATATGATTCCTATGAGGCCTGTG
ACTCAAGGGCCATCCTGAGTGAACGAGACCTCTACCGGTCGAGCTATGACTATGGCGAGCTTGA
CCCTGAGATGGAAATGGCCTATGAGGGTCAATATGATGCCTACCGTGACCAGTTTCGAATGCGT
GGAGGAGATACATTTGGTCCAAGGGCTCAGGGCTGGGCCCGGGATGCCCGGAGTGGACGGCCAA
TGGCCTCGGGCTATGGGCGCATGTGGGAAGACCCCATGGGGGCCCGGGGCCAGTGCATGCCTGG
TGCCTCCCGGCTGCCCTCCCTCTTCTCCCAGAACATCATACCCGAGTATGGCATGTTCCAGGGC
ATGCGTGGTGGGGGTGCCTTCTCTGGTGGCTCCCGATTTGGCTTCGGATTTGGCAATGGCATGA
AGCAGATGAGGCGGACCTGGAAGACCTGGACCACAGCGGACTTCCGGACCAAAAAGAAGAAGAG
AAAGCAGGGTGGCAGTCCTGATGAGCCAGACTGCAAGGCTACCAGAACAGACTGCTCAGACAAC
AGTGACTCAGACAACGATGAAGGTACTGAGGGGGAAGCTGCAGAGGGTGCTGAAAGTGCTGAGG
CTCTGGAGAAAGGCTCCCGAGCAGAAGGAGAGGACGAGGAGGGAAAAGAAGATGGGAGAGAAGA
AGGCAAAGAAGATTTGGAGAAAGGGGCCCTGACCGCCCAGGATGAGAGCAGCCAGGCCAAGCGC
AAGTTGCAGGCAAGCAAGAAGAGCCAAGACAAACAGAAAAAGCGGCAGCGGGACCGTATGGTGG
AAAGGATCCAGTTTGTCTGTTCTCTCTGCAAATACCGGACCTTCTATGAAGACGAGATGGGTAG
CCACCTTGATAGCAAGTTCCACAAGGAACACTTCAAATATGTAGGCACCAAGCTTCCCAAGCAG
ACAGCTGACTTTCTGCAGGACTATGTCACCAACAAGACCAAGAAGACAGAGGAGCTCCGAAAAA
CTGTAGAGGACCTTGATGGTCTGATCCAACAAATCTACAGAGACCAAGATCTGACCCAAGAAAT
TGCTATGGAGCATTTTGTGAAGAAGGTGGAGGCGGCCCATTGTGCAGCCTGTGACCTTTTCATC
CCCATGCAGTTTGGAATCATCCAAAAGCATCTCAAGACTATGGATCACAACCGAAACCGCAGGC
TCATGATGGAGCAGTCCAAGAAGTCCTCGCTTATGGTGGCACGCAGTATTCTGAACAACAAGCT
CATTAGCAAGAAGCTGGAGCGATATCTTAAGGGCGAGAATCCTTTTACTGACAACCCGGAGGAG
GAGAAGGAACAAGACGAGGTGGAGGCTGGCGCTCTGGAAGAAGGGGCACCAAGCGAAGCGACAG
GGCTCACAGAAGGCGTGTCGGTCCAGCCCCCGGTGCCCCTGGAGCCCACCCCGGGGACTGCAAC
ACCGCCACCTCCGCCACCACCAGAGGAGGAGAACCCAGTACCCTTGCTGGGCGGGGCGCTACAG
TGCCAGATCCGCGGGATCCCGGGGCTCGACGTAGAAGACGACGAGGAGGGCGGTGGGGGTCCTT
AACCCTTACCGGGCACGGCTCGCGTAGCCGAGGCTGGAAATCCAGCCTAATAAAGTGCTTTCCC
ACCGAG

hide sequence

RefSeq Acc Id:

XM_006241055 ⟹ XP_006241117

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,984,382 - 12,012,843 (-)	NCBI
mRatBN7.2	7	11,339,206 - 11,362,287 (-)	NCBI
Rnor_6.0	7	14,346,563 - 14,369,835 (-)	NCBI
Rnor_5.0	7	14,494,264 - 14,524,003 (-)	NCBI

Sequence:

show sequence

CGGGGCTGGGGCGTGTGTGGAAGGACCCCAGGGATTGTTGTGGCGTCAGACGCGCAGAGTAGCG
GTCTGTGTCCAAGGCTCGGGTGTTCTCTGCGGCCATGAGCTACACAGGCTTTGTCCAAGGATCC
GAAACCACTTTGCAGTCTACCTACTGTGACACCAGTGCCCAGCCCACCTGTGATTATGGATATG
GAACTTGGAACTCTGGGACAAATAGAGGCTACGAGAACTATGGTTATGGCTATGGCTATGGCCA
GGATAACACCACCAACTATGGGTATGGTATGGCCACTTCACACTCTTGGGAAATGGCTAACTCT
GACACAAATGCAAACCCTAGTGCCTCGGGTAGCGCCAGTGCCGATTCCGTTTTATCCAGAATTA
ACCAGCGCTTAGATATGATGCCACACTTGGAGACAGACATGATACAAGGAGGTGTGTACGGCTC
AGGTGGTGGAGAAAGATATGATTCCTATGAGGCCTGTGACTCAAGGGCCATCCTGAGTGAACGA
GACCTCTACCGGTCGAGCTATGACTATGGCGAGCTTGACCCTGAGATGGAAATGGCCTATGAGG
GTCAATATGATGCCTACCGTGACCAGTTTCGAATGCGTGGAGGAGATACATTTGGTCCAAGGGC
TCAGGGCTGGGCCCGGGATGCCCGGAGTGGACGGCCAATGGCCTCGGGCTATGGGCGCATGTGG
GAAGACCCCATGGGGGCCCGGGGCCAGTGCATGCCTGGTGCCTCCCGGCTGCCCTCCCTCTTCT
CCCAGAACATCATACCCGAGTATGGCATGTTCCAGGGCATGCGTGGTGGGGGTGCCTTCTCTGG
TGGCTCCCGATTTGGCTTCGGATTTGGCAATGGCATGAAGCAGATGAGGCGGACCTGGAAGACC
TGGACCACAGCGGACTTCCGGACCAAAAAGAAGAAGAGAAAGCAGGGTGGCAGTCCTGATGAGC
CAGACTGCAAGGCTACCAGAACAGACTGCTCAGACAACAGTGACTCAGACAACGATGAAGGTAC
TGAGGGGGAAGCTGCAGAGGGTGCTGAAAGTGCTGAGGCTCTGGAGAAAGGCTCCCGAGCAGAA
GGAGAGGACGAGGAGGGAAAAGAAGATGGGAGAGAAGAAGGCAAAGAAGATTTGGAGAAAGGGG
CCCTGACCGCCCAGGATGAGAGCAGCCAGGCCAAGCGCAAGTTGCAGGCAAGCAAGAAGAGCCA
AGACAAACAGAAAAAGCGGCAGCGGGACCGTATGGTGGAAAGGATCCAGTTTGTCTGTTCTCTC
TGCAAATACCGGACCTTCTATGAAGACGAGATGGGTAGCCACCTTGATAGCAAGTTCCACAAGG
AACACTTCAAATATGTAGGCACCAAGCTTCCCAAGCAGACAGCTGACTTTCTGCAGGACTATGT
CACCAACAAGACCAAGAAGACAGAGGAGCTCCGAAAAACTGTAGAGGACCTTGATGGTCTGATC
CAACAAATCTACAGAGACCAAGATCTGACCCAAGAAATTGCTATGGAGCATTTTGTGAAGAAGG
TGGAGGCGGCCCATTGTGCAGCCTGTGACCTTTTCATCCCCATGCAGTTTGGAATCATCCAAAA
GCATCTCAAGACTATGGATCACAACCGAAACCGCAGGTACTGGAGTTGAGACAAACCTACAAGC
TTGTACATATAGCAAGCACTTAGCCACTGAGCAACATTCTCAGCTGTTCTGTTATGAGGCGTGA
TCCCACAATGTCGGTCAGGCTGGCCTGACACTTGCTTGGCTGCCCCTAAGTGGCCTAGAACTGA
CGATCTTCCTGCTTCAACCACCTGAGTATTTGGATTATAGGCAGGCACTGTCATAGCCTGCCAA
AAGTTTAATTTTAATAAAATACTCTCTATTGTGCCTTTTATTGTTCATGCTTAGGGTGTATTAT
ATGAAAATGTGTTAAAGGTCATGTAGGAACTCCACCACTTCCCGCTCCTCCTTTTTGAGATGGG
AGTCTCACTATGTATGTGTCTATGCTTGGCCTAGAACTTGCTATATAGAGAGGCTAGCTTTGAA
CTTATGGCAGTCTTCTTGCCTCTGCCTCATATTCCAGGTTTCATCTTTTACAATTAGGCCTTAA
CCCATTTAATTGTTTTATCATATGAGGGTAGGACCTAATTTCATTTTTCTGCATGTGAATATCC
AGTAATCCCAATACCATTTGTAAGACAGTTCTTATCCCCAATAAATGACCATTGCTCCATGTAG
AAAGTCAGTTGACAATAACTATGTTTATTTCTGGACTCCAATTCCATTCCATTGTTTTTGGTCC
TTTTTGGGGGAGGTGGGATAAGGGACTAATTTGTTGTTGTTGAGAGTTCTTACTCTGTAACTTG
GACTAGCCTTGAATTGGAATTATTCTTTGTGTCTCTGCCTATGTGCTGGAATTTATTCTTTGTA
CTGTAGCCTCATAATTAAATTCAGAATGTGTGATGTGTCCAACGTTGTTTTCAATATTGATTCT
GTTTGTATCAGTTGTATGCTCTTTGGTTTTAGTATTAACTTGTCATTTTTACTGAAAAACCAAA
CTGGTGTTCTGATAAAATTATGTTGTGTTTTTAGATGATTTGGGGAAGTCCTGTTATCTTACAA
TATTGTGTTTGTTGCCTCTTGGTGCAGTGAATAGAGTGTTAGTCTTGTA

hide sequence

RefSeq Acc Id:

XM_039078627 ⟹ XP_038934555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,995,395 - 12,012,843 (-)	NCBI
mRatBN7.2	7	11,344,769 - 11,362,287 (-)	NCBI

RefSeq Acc Id:

XM_039078629 ⟹ XP_038934557

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,996,710 - 12,012,843 (-)	NCBI
mRatBN7.2	7	11,345,958 - 11,362,287 (-)	NCBI

RefSeq Acc Id:

XM_063263156 ⟹ XP_063119226

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,984,382 - 12,012,843 (-)	NCBI

RefSeq Acc Id:

XM_063263157 ⟹ XP_063119227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,996,710 - 12,012,843 (-)	NCBI

RefSeq Acc Id:

XM_063263158 ⟹ XP_063119228

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,996,060 - 12,012,843 (-)	NCBI

RefSeq Acc Id:

XM_063263159 ⟹ XP_063119229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,996,710 - 12,012,843 (-)	NCBI

RefSeq Acc Id:

XR_001838673

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,983,726 - 12,012,843 (-)	NCBI
mRatBN7.2	7	11,332,671 - 11,362,287 (-)	NCBI
Rnor_6.0	7	14,340,168 - 14,369,835 (-)	NCBI

Sequence:

show sequence

CGGGGCTGGGGCGTGTGTGGAAGGACCCCAGGGATTGTTGTGGCGTCAGACGCGCAGAGTAGCG
GTCTGTGTCCAAGGCTCGGGTGTTCTCTGCGGCCATGAGCTACACAGGCTTTGTCCAAGGATCC
GAAACCACTTTGCAGTCTACCTACTGTGACACCAGTGCCCAGCCCACCTGTGATTATGGATATG
GAACTTGGAACTCTGGGACAAATAGAGGCTACGAGAACTATGGTTATGGCTATGGCTATGGCCA
GGATAACACCACCAACTATGGGTATGGTATGGCCACTTCACACTCTTGGGAAATGGCTAACTCT
GACACAAATGCAAACCCTAGTGCCTCGGGTAGCGCCAGTGCCGATTCCGTTTTATCCAGAATTA
ACCAGCGCTTAGATATGATGCCACACTTGGAGACAGACATGATACAAGGAGGTGTGTACGGCTC
AGGTGGTGGAGAAAGATATGATTCCTATGAGGCCTGTGACTCAAGGGCCATCCTGAGTGAACGA
GACCTCTACCGGTCGAGCTATGACTATGGCGAGCTTGACCCTGAGATGGAAATGGCCTATGAGG
GTCAATATGATGCCTACCGTGACCAGTTTCGAATGCGTGGAGGAGATACATTTGGTCCAAGGGC
TCAGGGCTGGGCCCGGGATGCCCGGAGTGGACGGCCAATGGCCTCGGGCTATGGGCGCATGTGG
GAAGACCCCATGGGGGCCCGGGGCCAGTGCATGCCTGGTGCCTCCCGGCTGCCCTCCCTCTTCT
CCCAGAACATCATACCCGAGTATGGCATGTTCCAGGGCATGCGTGGTGGGGGTGCCTTCTCTGG
TGGCTCCCGATTTGGCTTCGGATTTGGCAATGGCATGAAGCAGATGAGGCGGACCTGGAAGACC
TGGACCACAGCGGACTTCCGGACCAAAAAGAAGAAGAGAAAGCAGGGTGGCAGTCCTGATGAGC
CAGACTGCAAGGCTACCAGAACAGACTGCTCAGACAACAGTGACTCAGACAACGATGAAGGTAC
TGAGGGGGAAGCTGCAGAGGGTGCTGAAAGTGCTGAGGCTCTGGAGAAAGGCTCCCGAGCAGAA
GGAGAGGACGAGGAGGGAAAAGAAGATGGGAGAGAAGAAGGCAAAGAAGATTTGGAGAAAGGGG
CCCTGACCGCCCAGGATGAGAGCAGCCAGGCCAAGCGCAAGTTGCAGGCAAGCAAGAAGAGCCA
AGACAAACAGAAAAAGCGGCAGCGGGACCGTATGGTGGAAAGGATCCAGTTTGTCTGTTCTCTC
TGCAAATACCGGACCTTCTATGAAGACGAGATGGGTAGCCACCTTGATAGCAAGTTCCACAAGG
AACACTTCAAATATGTAGGCACCAAGCTTCCCAAGCAGACAGCTGACTTTCTGCAGGACTATGT
CACCAACAAGACCAAGAAGACAGAGGAGCTCCGAAAAACTGTAGAGGACCTTGATGGTCTGATC
CAACAAATCTACAGAGACCAAGATCTGACCCAAGGTGAGGAGGTTCCATCCCACCAGGATGGCT
GCCACCAGAAATTGCTATGGAGCATTTTGTGAAGAAGGTGGAGGCGGCCCATTGTGCAGCCTGT
GACCTTTTCATCCCCATGCAGTTTGGAATCATCCAAAAGCATCTCAAGACTATGGATCACAACC
GAAACCGCAGGCTCATGATGGAGCAGTCCAAGAAGTCCTCGCTTATGGTGGCACGCAGTATTCT
GAACAACAAGCTCATTAGCAAGAAGCTGGAGCGATATCTTAAGGGCGAGAATCCTTTTACTGAC
AACCCGGAGGAGGAGAAGGAACAAGACGAGGTGGAGGCTGGCGCTCTGGAAGAAGGGGCACCAA
GCGAAGCGACAGGGCTCACAGAAGGCGTGTCGGTCCAGCCCCCGGTGCCCCTGGAGCCCACCCC
GGGGACTGCAACACCGCCACCTCCGCCACCACCAGAGGAGGAGAACCCAGTACCCTTGCTGGGC
GGGGCGCTACAGTGCCAGATCCGCGGGATCCCGGGGCTCGACGTAGAAGACGACGAGGAGGGCG
GTGGGGGTCCTTAACCCTTACCGGGCACGGCTCGCGTAGCCGAGGCTGGAAATCCAGCCTAATA
AAGTGCTTTCCCACCGAG

hide sequence

RefSeq Acc Id:

XR_005486554

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,984,382 - 12,012,843 (-)	NCBI
mRatBN7.2	7	11,339,206 - 11,362,287 (-)	NCBI

RefSeq Acc Id:

XR_010052949

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,995,395 - 12,012,843 (-)	NCBI

RefSeq Acc Id:

XR_010052950

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	11,995,395 - 12,012,843 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013968	(Get FASTA)	NCBI Sequence Viewer
	XP_006241116	(Get FASTA)	NCBI Sequence Viewer
	XP_006241117	(Get FASTA)	NCBI Sequence Viewer
	XP_038934555	(Get FASTA)	NCBI Sequence Viewer
	XP_038934557	(Get FASTA)	NCBI Sequence Viewer
	XP_063119226	(Get FASTA)	NCBI Sequence Viewer
	XP_063119227	(Get FASTA)	NCBI Sequence Viewer
	XP_063119228	(Get FASTA)	NCBI Sequence Viewer
	XP_063119229	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85785	(Get FASTA)	NCBI Sequence Viewer
	EDL89465	(Get FASTA)	NCBI Sequence Viewer
	EDL89466	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008560
	ENSRNOP00000008560.7
	ENSRNOP00000092015
	ENSRNOP00000092015.1

RefSeq Acc Id:

NP_001013968 ⟸ NM_001013946

- UniProtKB:

Q5U306 (UniProtKB/TrEMBL), F1LP74 (UniProtKB/TrEMBL), A0A9K3Y6N0 (UniProtKB/TrEMBL), A0A0G2K0P0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSYTGFVQGSETTLQSTYCDTSAQPTCDYGYGTWNSGTNRGYENYGYGYGYGQDNTTNYGYGMA
TSHSWEMANSDTNANPSASGSASADSVLSRINQRLDMMPHLETDMIQGGVYGSGGGERYDSYEA
CDSRAILSERDLYRSSYDYGELDPEMEMAYEGQYDAYRDQFRMRGGDTFGPRAQGWARDARSGR
PMASGYGRMWEDPMGARGQCMPGASRLPSLFSQNIIPEYGMFQGMRGGGAFSGGSRFGFGFGNG
MKQMRRTWKTWTTADFRTKKKKRKQGGSPDEPDCKATRTDCSDNSDSDNDEGTEGEAAEGAESA
EALEKGSRAEGEDEEGKEDGREEGKEDLEKGALTAQDESSQAKRKLQASKKSQDKQKKRQRDRM
VERIQFVCSLCKYRTFYEDEMGSHLDSKFHKEHFKYVGTKLPKQTADFLQDYVTNKTKKTEELR
KTVEDLDGLIQQIYRDQDLTQEIAMEHFVKKVEAAHCAACDLFIPMQFGIIQKHLKTMDHNRNR
RLMMEQSKKSSLMVARSILNNKLISKKLERYLKGENPFTDNPEEEKEQDEVEAGALEEGAPSEA
TGLTEGVSVQPPVPLEPTPGTATPPPPPPPEEENPVPLLGGALQCQIRGIPGLDVEDDEEGGGG
P

hide sequence

RefSeq Acc Id:	XP_006241116 ⟸ XM_006241054
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K0P0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSYTGFVQGSETTLQSTYCDTSAQPTCDYGYGTWNSGTNRGYENYGYGYGYGQDNTTNYGINQR LDMMPHLETDMIQGGVYGSGGGERYDSYEACDSRAILSERDLYRSSYDYGELDPEMEMAYEGQY DAYRDQFRMRGGDTFGPRAQGWARDARSGRPMASGYGRMWEDPMGARGQCMPGASRLPSLFSQN IIPEYGMFQGMRGGGAFSGGSRFGFGFGNGMKQMRRTWKTWTTADFRTKKKKRKQGGSPDEPDC KATRTDCSDNSDSDNDEGTEGEAAEGAESAEALEKGSRAEGEDEEGKEDGREEGKEDLEKGALT AQDESSQAKRKLQASKKSQDKQKKRQRDRMVERIQFVCSLCKYRTFYEDEMGSHLDSKFHKEHF KYVGTKLPKQTADFLQDYVTNKTKKTEELRKTVEDLDGLIQQIYRDQDLTQEIAMEHFVKKVEA AHCAACDLFIPMQFGIIQKHLKTMDHNRNRRLMMEQSKKSSLMVARSILNNKLISKKLERYLKG ENPFTDNPEEEKEQDEVEAGALEEGAPSEATGLTEGVSVQPPVPLEPTPGTATPPPPPPPEEEN PVPLLGGALQCQIRGIPGLDVEDDEEGGGGP hide sequence

RefSeq Acc Id:

XP_006241117 ⟸ XM_006241055

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSYTGFVQGSETTLQSTYCDTSAQPTCDYGYGTWNSGTNRGYENYGYGYGYGQDNTTNYGYGMA
TSHSWEMANSDTNANPSASGSASADSVLSRINQRLDMMPHLETDMIQGGVYGSGGGERYDSYEA
CDSRAILSERDLYRSSYDYGELDPEMEMAYEGQYDAYRDQFRMRGGDTFGPRAQGWARDARSGR
PMASGYGRMWEDPMGARGQCMPGASRLPSLFSQNIIPEYGMFQGMRGGGAFSGGSRFGFGFGNG
MKQMRRTWKTWTTADFRTKKKKRKQGGSPDEPDCKATRTDCSDNSDSDNDEGTEGEAAEGAESA
EALEKGSRAEGEDEEGKEDGREEGKEDLEKGALTAQDESSQAKRKLQASKKSQDKQKKRQRDRM
VERIQFVCSLCKYRTFYEDEMGSHLDSKFHKEHFKYVGTKLPKQTADFLQDYVTNKTKKTEELR
KTVEDLDGLIQQIYRDQDLTQEIAMEHFVKKVEAAHCAACDLFIPMQFGIIQKHLKTMDHNRNR
RYWS

hide sequence

Ensembl Acc Id:

ENSRNOP00000008560 ⟸ ENSRNOT00000008560

Ensembl Acc Id:

ENSRNOP00000071522 ⟸ ENSRNOT00000090673

RefSeq Acc Id:	XP_038934555 ⟸ XM_039078627
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038934557 ⟸ XM_039078629
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000092015 ⟸ ENSRNOT00000110147

RefSeq Acc Id:	XP_063119226 ⟸ XM_063263156
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063119228 ⟸ XM_063263158
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063119229 ⟸ XM_063263159
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063119227 ⟸ XM_063263157
- Peptide Label:	isoform X4

Protein Domains

C2H2 AKAP95-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K0P0-F1-model_v2	AlphaFold	A0A0G2K0P0	1-641	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695067

Promoter ID:

EPDNEW_R5592

Type:

initiation region

Name:

Akap8l_1

Description:

A-kinase anchoring protein 8 like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	14,369,788 - 14,369,848	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359200	AgrOrtholog
BioCyc Gene	G2FUF-34828	BioCyc
Ensembl Genes	ENSRNOG00000006355	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008560	ENTREZGENE
	ENSRNOT00000008560.9	UniProtKB/TrEMBL
	ENSRNOT00000110147	ENTREZGENE
	ENSRNOT00000110147.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7108413	IMAGE-MGC_LOAD
InterPro	AKAP95	UniProtKB/TrEMBL
	ZF_C2H2_AKAP95	UniProtKB/TrEMBL
KEGG Report	rno:299569	UniProtKB/TrEMBL
MGC_CLONE	MGC:93758	IMAGE-MGC_LOAD
NCBI Gene	299569	ENTREZGENE
PANTHER	A-KINASE ANCHOR PROTEIN 8-LIKE	UniProtKB/TrEMBL
	AKAP95	UniProtKB/TrEMBL
Pfam	AKAP95	UniProtKB/TrEMBL
PhenoGen	Akap8l	PhenoGen
PROSITE	ZF_C2H2_AKAP95	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006355	RatGTEx
UniProt	A0A0G2K0P0	ENTREZGENE
	A0A8I6AV30_RAT	UniProtKB/TrEMBL
	A0A9K3Y6N0	ENTREZGENE, UniProtKB/TrEMBL
	A6K946_RAT	UniProtKB/TrEMBL
	F1LP74	ENTREZGENE
	Q5U306	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F1LP74	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Akap8l	A-kinase anchoring protein 8 like	Akap8l	A kinase (PRKA) anchor protein 8-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Akap8l	A kinase (PRKA) anchor protein 8-like			Symbol and Name updated	1299863	APPROVED
2005-07-29	LOC299569	similar to NAKAP95			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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