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Gene: Raver1 (ribonucleoprotein, PTB-binding 1) Rattus norvegicus

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Symbol:

Raver1

Name:

ribonucleoprotein, PTB-binding 1

RGD ID:

1359190

Description:

Predicted to enable RNA binding activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human RAVER1 (ribonucleoprotein, PTB binding 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC298705; protein raver-1; RAVER1 homolog; RAVER1 homolog (human); Raver1h; ribonucleoprotein PTB-binding 1; similar to EXCretory canal abnormal EXC-7, ELAV type RNA binding protein (48.7 kD) (exc-7)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAVER1 (ribonucleoprotein, PTB binding 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Raver1 (ribonucleoprotein, PTB-binding 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Raver1 (ribonucleoprotein, PTB binding 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAVER1 (ribonucleoprotein, PTB binding 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAVER1 (ribonucleoprotein, PTB binding 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Raver1 (ribonucleoprotein, PTB binding 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAVER1 (ribonucleoprotein, PTB binding 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Raver1 (ribonucleoprotein, PTB binding 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Raver1 (ribonucleoprotein, PTB binding 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MORN4 (MORN repeat containing 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RAVER1 (ribonucleoprotein, PTB binding 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Raver1 (ribonucleoprotein, PTB-binding 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	raver1 (ribonucleoprotein, PTB-binding 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	raver1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	27,886,641 - 27,907,192 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	27,886,651 - 27,905,331 (-)	Ensembl				GRCr8
mRatBN7.2	8	19,610,464 - 19,629,188 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,610,466 - 19,629,152 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	23,629,875 - 23,648,565 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	21,927,729 - 21,946,421 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	19,840,134 - 19,858,824 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,092,084 - 22,111,863 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,092,094 - 22,111,863 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	22,148,754 - 22,168,072 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	20,096,974 - 20,115,289 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	21,004,887 - 21,023,576 (-)	NCBI		Celera
RGSC_v3.1	8	20,096,980 - 20,115,289 (-)	NCBI
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

beta-lapachone (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

cantharidin (ISO)

copper(II) chloride (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

diallyl trisulfide (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

dioxygen (ISO)

Enterolactone (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

FR900359 (ISO)

ivermectin (ISO)

lead(0) (ISO)

methimazole (EXP)

ozone (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

resveratrol (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

titanium dioxide (ISO)

toluene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IEA)

nucleoplasm (IEA,ISO)

nucleus (IEA)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:14633994	PMID:15489334	PMID:22681889

Genomics

Comparative Map Data

Raver1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	27,886,641 - 27,907,192 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	27,886,651 - 27,905,331 (-)	Ensembl				GRCr8
mRatBN7.2	8	19,610,464 - 19,629,188 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,610,466 - 19,629,152 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	23,629,875 - 23,648,565 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	21,927,729 - 21,946,421 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	19,840,134 - 19,858,824 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,092,084 - 22,111,863 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,092,094 - 22,111,863 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	22,148,754 - 22,168,072 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	20,096,974 - 20,115,289 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	21,004,887 - 21,023,576 (-)	NCBI		Celera
RGSC_v3.1	8	20,096,980 - 20,115,289 (-)	NCBI
Cytogenetic Map	8	q13	NCBI

RAVER1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	10,316,212 - 10,333,529 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	10,316,212 - 10,333,548 (-)	Ensembl			hg38	GRCh38
GRCh37	19	10,426,888 - 10,444,205 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	10,287,888 - 10,305,314 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	10,322,277 - 10,339,705 (-)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	10,007,146 - 10,024,575 (-)	NCBI		HuRef
CHM1_1	19	10,427,421 - 10,444,848 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	10,442,322 - 10,459,641 (-)	NCBI		T2T-CHM13v2.0

Raver1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	20,985,454 - 21,003,295 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	20,985,454 - 21,003,304 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	21,074,158 - 21,091,999 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	21,074,158 - 21,092,008 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	20,878,602 - 20,896,432 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	20,817,922 - 20,842,389 (-)	NCBI		MGSCv36	mm8
Celera	9	18,342,872 - 18,360,702 (-)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	7.71	NCBI

Raver1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	1,594,531 - 1,610,412 (-)	Ensembl
ChiLan1.0	NW_004955495	1,594,864 - 1,609,251 (-)	NCBI	ChiLan1.0	ChiLan1.0

RAVER1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	15,233,194 - 15,251,001 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	14,231,824 - 14,249,612 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	9,866,631 - 9,883,833 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	10,532,355 - 10,549,142 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	10,532,362 - 10,549,142 (-)	Ensembl			panPan2	panpan1.1

RAVER1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	50,784,068 - 50,798,303 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	50,653,826 - 50,668,049 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	51,305,704 - 51,319,929 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	51,304,534 - 51,319,931 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	50,511,848 - 50,526,071 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	50,940,625 - 50,954,836 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	51,181,734 - 51,195,963 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Raver1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	209,687,391 - 209,704,240 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	650,473 - 667,382 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	650,463 - 667,379 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAVER1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	9,364,903 - 9,387,874 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	9,366,151 - 9,383,633 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666074	10,655,263 - 10,673,534 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Raver1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	2,474,217 - 2,487,927 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624828	2,473,824 - 2,486,967 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Raver1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	17,335,785 - 17,354,596 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Raver1
153 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	201
Count of miRNA genes:	131
Interacting mature miRNAs:	169
Transcripts:	ENSRNOT00000046983
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	32882639	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat

Markers in Region

RH143439

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	19,619,528 - 19,619,628 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,101,147 - 22,101,246	NCBI	Rnor6.0
Rnor_5.0	8	22,158,010 - 22,158,109	UniSTS	Rnor5.0
RGSC_v3.4	8	20,106,037 - 20,106,136	UniSTS	RGSC3.4
Celera	8	21,013,943 - 21,014,042	UniSTS
RH 3.4 Map	8	182.1	UniSTS
Cytogenetic Map	8	q13	UniSTS

UniSTS:236065

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	19,610,742 - 19,610,847 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,092,361 - 22,092,465	NCBI	Rnor6.0
Rnor_5.0	8	22,149,033 - 22,149,137	UniSTS	Rnor5.0
RGSC_v3.4	8	20,097,251 - 20,097,355	UniSTS	RGSC3.4
Celera	8	21,005,164 - 21,005,268	UniSTS
Cytogenetic Map	8	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000046983 ⟹ ENSRNOP00000048510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	27,886,651 - 27,905,331 (-)	Ensembl
mRatBN7.2 Ensembl	8	19,610,466 - 19,629,152 (-)	Ensembl
Rnor_6.0 Ensembl	8	22,092,094 - 22,111,863 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000169717 ⟹ ENSRNOP00000112631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	27,886,832 - 27,905,331 (-)	Ensembl

RefSeq Acc Id:

NM_001013939 ⟹ NP_001013961

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	27,886,641 - 27,905,331 (-)	NCBI
mRatBN7.2	8	19,610,466 - 19,629,156 (-)	NCBI
Rnor_6.0	8	22,092,084 - 22,111,863 (-)	NCBI
Rnor_5.0	8	22,148,754 - 22,168,072 (-)	NCBI
RGSC_v3.4	8	20,096,974 - 20,115,289 (-)	RGD
Celera	8	21,004,887 - 21,023,576 (-)	RGD

Sequence:

show sequence

CGCCGGGTTTCCCAAGATGGCGGCCGACGTGTCCGTTACTCACCGGCCGCCGCTCAGCCCGGAG
GCGGAGGCCGAAGCGGAAACTCCCGAGACCGTCGATCGCCGGACACCCGAACAAGAGTTGCCGC
CGCTCGATCCGGAAGAGATCCGGAAACGCCTGGAACACACTGAGCGCCAGTTCCGTAACCGCCG
CAAGATACTGATCCGAGGCCTCCCGGGGGACGTGACCAACCAGGAAGTACATGACCTCCTGAGC
GACTACGAACTCAAGTACTGTTTCGTGGACAAATACAAAGGGACAGCTTTTGTGACCCTGCTGA
ATGGGGAGCAGGCTGAAGCTGCCATCAACACCTTCCACCAGAGCCGCCTTCGAGAGCGGGAGCT
GTCAGTTCAGTTGCAGCCTACTGATGCTCTGCTGTGTGTGGCCAACCTGCCACCTAGTCTGACA
CAGGCGCAATTTGAAGAGCTGGTGCGGCCCTTTGGCAGCCTGGAGCGCTGCTTCCTAGTGTACA
GTGAGCGCACTGGCCACTCTAAAGGCTATGGCTTTGCAGAGTACATGAAGAAAGACTCGGCTGC
CAGGGCCAAGTCTGACTTGCTAGGCAAGCCACTGGGCCCACGCACACTGTACGTGCACTGGACA
GATGCTGGGCAGCTGACCCCTGCATTGTTGCACTCTCGGTGCCTCTGTGTGGACCACCTGCCAC
CTGGCTTCAACGATGTGGATGCTCTGCGCCAGGCTCTGTCGGCGGTCTATACCCCCACCTTCTG
TCAGCTGGCAAGTGGCCAGGATGGGCAGCTAAAGGGCTTCGCGGTACTGGAGTACGAGACAGCA
GAGATGGCAGAGGCAGCACAACAGCGGGCAGATGGCCTGGCCCTGGGTGGCAGCCACCTACGTG
TGTCTTTCTGTGCTCCAGGTCCCCCAGGCCGCAGCATGTTGGCGGCACTCATTGCTGCCCAGGC
CACGGCTCTCAATCGAGGCAAGGGACTCCTGCCTGAGCCAAATATCCTGCAGCTATTGAACAAC
CTGGGCCCATCTGCCTCCCTCCAGCTGCTCCTCAACCCCCTGCTGCATGGAGGTGCCAGTGGCA
AGCAGGGCCTCCTGGGTGCGCCCCCTGCCATGCCGCTGCTCAGTGGGCCTGCCCTGTCTACTGC
ACTGCTGCAGCTAGCCCTGCAGAGCCAGAACCAGAGCCAGAGCCAGAGCCAGAAGAAGCCTGGG
ATCCTGGGAGACTCACCTCTGGGTACCCTCCAGGCCGGGGCCCAACCTTCCAACTCTCTCCTAG
GAGAGCTGTCTGCAGGGGGGGGCCTGGCCCCGGAACTGCCGCCCCGCCGAGGGAAGCCACAACC
CTTACTACCACCATTGCTGGGCCCCTCTGGGGGTGACCGGGAGCCCATGGGTCTGGGTCCCCCA
GCATCCCAGCTCACTCCACCCCCAGCCCCTATGGGGCTCCGAGGCTCCAGTCTTAGAGGCCTCC
CGAAGGACAGTGGGCCCCTGCCAACGCCCCCTGGGGTCTCACTGCTGGGGGAACCCCCAAAGGA
CTACCGCATCCCCCTCAACCCCTACCTGAATCTACACAGCCTGCTTCCATCCAGTAACCTAGCA
GGCAAGGAGACCCGGGGCTGGGGAGGCTCTGGGAGAGGCCGCCGCCCAGCGGAGCCCCCCTTGC
CTAGCCCTGCAGTTCCTGGTGGAGGCAATGCTAGCAACAATGGCAGCAAAGCCTTCCCAATGAA
GCCCCGCCTGCTCAGCCCCATCGCCAGCAACCGCCTGCCCCCTGAGCCAGGGCTGCCCGACAGC
TACAGCTTTGATTACCCCACAGATGTGGGACCTAGACGGCTCTTCTCCCACCCTCGGGAATCAA
ACTTAGGGGCTCATGGCCCCAGCCGACACAAGATGTCCCCCCCACCTAGCAGCTTCAGTGAGCC
TCGCAGTGGTGGAGGCAGTGGGGGACCCCTCTCTCATTTCTATTCTGGCTCACCCACCTCCTAC
TTCACCAGTGGCCTACAGGCTGGCCTCAAGCAGAGCCACCTGAACAAGGCTGTCGGTTCCTCCC
CAATGGGCTCCAGTGAAGGGCTCCTGGGCCTGGGCCCAGGGCCCAATGGTCACAGTCACCTGCT
GAAGACCCCACTGGGTGGCCAGAAACGCAGTTTTTCCCACCTGCTGCCCTCACCTGAGCCCAGC
CCAGAAGGCAGCTACGTGGGCCAGCACTCCCAGGGCCTTGGTGGCCACTACGCGGACTCCTACC
TGAAGCGGAAGAGGATTTTCTAAGGGGTCAGCGCCAGAGATGCTCCAAGGGCCTGCACCAAGTT
GCTTTTGGGTTCTTTCTGGTATTTGTGTTTTGTGGGATTTTATTTTTATTATTTTTTTTATGTC
CTTTCTTTGGGTAATAGAGAAATCTCTGCAAAAGACTTTGGTGACCAACCAGCTGGAGCTCAAG
GAATGTGGGGTATCTGGGGGCCATACCATTACCTGTGGGCTTGCTCCTGGAACCAAACCCTGCA
GCCTTAAGAGAGAGGGGCCTGGCCTGCTCTCTTTCCCTCCCCAGCTCCTGGCCTTCTGTGTTGG
CTCTCCAGGCCTCCTCTCCTGCCTCATCACTCCTGTGTTCTGGCCTTTTGAGTGCCTTTGGAGG
TGTCCCTGACCTGTGAGGATCAGAGACAGTCCCCGTTTTTAAACTTCGACAATTAACTTTGATT
TCCTTTTCTAATTTTTATTATTTTTTAAAACAACCAGGATGATGACCACATCCACTCCCCTATC
CCTCCAGAAAGCCCCAACTTGATTTCTTCAGGGTCTGGCCTTCCCTGGGCCTCTGTTCCAACAG
CTTAACCCCATTCTCTTCCCAGTCATCTGCTGCAGGTATAGCTGTGTCATGCCCCTGCCTGCCT
ACTCCGGCCAGTACCCTAAGCCCCAGGATCTCCAGCCCCTGCCTTCTGATGCCTTAAAGTTGGG
CCACAGGTCCTGCTGGGTCAGAGCCTCTCAGATGCGGAGCTCCAAAAGCTCAGCTCAGGACCAA
AGAGCTCTGGCCTAGGGTTCATCCTTTCTCCAGGGTGTCTGCCCTCTGGACAGAAGGCCAAAGC
CTTGGTCTTGGCAAACCACCCCTTTTGCCCTAAGCTTGGGTGCAGAGACCAGTATTTTCTGCTG
GCTTCAACAGTGTCCCCTGCTGTCTGTGAAAGGTGACCATTGTACCCAGGCCACTGGACCTCTA
CCATGTTCCTTCAAACCCAGATCATCACCATCCCCAGGCTGGATCACTGGAGCAGGTCTCCTCT
CTGCCCATCTGAGGGGACCTAGGGACTCTGCCCCTGGCCAGCTGAGCCACCACCAGCCTCCCTC
CTCAAACCTGATGAACCAAACTCACTCCAGTAGGGGGCATTCCCTCCCCTTTCCCCCTTCCTGC
CCTCCCCTGCTCCCTGACCTTTGCTGAATTAAAGTTTGTAAGTAAACGGTTTTAAGAAAAAAAA
AAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039080982 ⟹ XP_038936910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	27,886,641 - 27,907,192 (-)	NCBI
mRatBN7.2	8	19,610,464 - 19,629,188 (-)	NCBI

RefSeq Acc Id:

XM_063265040 ⟹ XP_063121110

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	27,886,641 - 27,907,192 (-)	NCBI

RefSeq Acc Id:

XM_063265041 ⟹ XP_063121111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	27,886,641 - 27,907,192 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013961	(Get FASTA)	NCBI Sequence Viewer
	XP_038936910	(Get FASTA)	NCBI Sequence Viewer
	XP_063121110	(Get FASTA)	NCBI Sequence Viewer
	XP_063121111	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83865	(Get FASTA)	NCBI Sequence Viewer
	EDL78325	(Get FASTA)	NCBI Sequence Viewer
	EDL78326	(Get FASTA)	NCBI Sequence Viewer
	EDL78327	(Get FASTA)	NCBI Sequence Viewer
	EDL78328	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048510
	ENSRNOP00000048510.3
GenBank Protein	Q5XI28	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013961 ⟸ NM_001013939

- UniProtKB:

Q5XI28 (UniProtKB/Swiss-Prot), A6JNN8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAADVSVTHRPPLSPEAEAEAETPETVDRRTPEQELPPLDPEEIRKRLEHTERQFRNRRKILIR
GLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQ
PTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSD
LLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDHLPPGFNDVDALRQALSAVYTPTFCQLASG
QDGQLKGFAVLEYETAEMAEAAQQRADGLALGGSHLRVSFCAPGPPGRSMLAALIAAQATALNR
GKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGGASGKQGLLGAPPAMPLLSGPALSTALLQLA
LQSQNQSQSQSQKKPGILGDSPLGTLQAGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPL
LGPSGGDREPMGLGPPASQLTPPPAPMGLRGSSLRGLPKDSGPLPTPPGVSLLGEPPKDYRIPL
NPYLNLHSLLPSSNLAGKETRGWGGSGRGRRPAEPPLPSPAVPGGGNASNNGSKAFPMKPRLLS
PIASNRLPPEPGLPDSYSFDYPTDVGPRRLFSHPRESNLGAHGPSRHKMSPPPSSFSEPRSGGG
SGGPLSHFYSGSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGPGPNGHSHLLKTPLG
GQKRSFSHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF

hide sequence

Ensembl Acc Id:

ENSRNOP00000048510 ⟸ ENSRNOT00000046983

RefSeq Acc Id:	XP_038936910 ⟸ XM_039080982
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063121111 ⟸ XM_063265041
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063121110 ⟸ XM_063265040
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000112631 ⟸ ENSRNOT00000169717

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XI28-F1-model_v2	AlphaFold	Q5XI28	1-748	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695775

Promoter ID:

EPDNEW_R6299

Type:

multiple initiation site

Name:

Raver1_1

Description:

ribonucleoprotein, PTB-binding 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	22,111,869 - 22,111,929	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359190	AgrOrtholog
BioCyc Gene	G2FUF-31439	BioCyc
Ensembl Genes	ENSRNOG00000020710	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000046983	ENTREZGENE
	ENSRNOT00000046983.4	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7127766	IMAGE-MGC_LOAD
InterPro	Euk_RNA-bind_prot	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RAVER1	UniProtKB/Swiss-Prot
	RAVER1_RRM1	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:298705	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95117	IMAGE-MGC_LOAD
NCBI Gene	298705	ENTREZGENE
PANTHER	OS02G0815200 PROTEIN	UniProtKB/Swiss-Prot
	RRM DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot
Pfam	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Raver1	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000020710	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0ABK0M0P5_RAT	UniProtKB/TrEMBL
	A6JNN8	ENTREZGENE, UniProtKB/TrEMBL
	Q5XI28	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Raver1	ribonucleoprotein, PTB-binding 1	Raver1h	RAVER1 homolog (human)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Raver1h	RAVER1 homolog (human)	LOC298705	similar to EXCretory canal abnormal EXC-7, ELAV type RNA binding protein (48.7 kD) (exc-7)	Symbol and Name updated	1299863	APPROVED
2005-07-29	LOC298705	similar to EXCretory canal abnormal EXC-7, ELAV type RNA binding protein (48.7 kD) (exc-7)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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