Slc38a9 (solute carrier family 38, member 9) - Rat Genome Database

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Pathways
Gene: Slc38a9 (solute carrier family 38, member 9) Rattus norvegicus
Analyze
Symbol: Slc38a9
Name: solute carrier family 38, member 9
RGD ID: 1311881
Description: Predicted to enable several functions, including L-amino acid transmembrane transporter activity; arginine binding activity; and cholesterol binding activity. Predicted to be involved in carboxylic acid transport; cellular response to amino acid stimulus; and positive regulation of TORC1 signaling. Predicted to be located in late endosome and lysosome. Predicted to be part of FNIP-folliculin RagC/D GAP and Ragulator complex. Predicted to be active in lysosomal membrane. Orthologous to human SLC38A9 (solute carrier family 38 member 9); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC310091; MGC125012; neutral amino acid transporter 9; putative sodium-coupled neutral amino acid transporter 9; RGD1311881; similar to hypothetical protein FLJ90709; sodium-coupled neutral amino acid transporter 9; solute carrier family 38 member 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8246,024,731 - 46,102,419 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl246,024,947 - 46,105,983 (+)EnsemblGRCr8
mRatBN7.2244,291,637 - 44,374,897 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,291,989 - 44,368,955 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx251,417,505 - 51,482,408 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0249,475,942 - 49,540,776 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0244,349,547 - 44,416,361 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0244,512,556 - 44,592,793 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,512,895 - 44,592,053 (+)Ensemblrn6Rnor6.0
Rnor_5.0263,554,196 - 63,634,429 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4244,044,770 - 44,110,884 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera240,082,412 - 40,147,573 (+)NCBICelera
RGSC_v3.1243,961,910 - 44,040,250 (+)NCBI
Cytogenetic Map2q14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22993404   PMID:25561175   PMID:25567906   PMID:29053970   PMID:30956113  


Genomics

Comparative Map Data
Slc38a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8246,024,731 - 46,102,419 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl246,024,947 - 46,105,983 (+)EnsemblGRCr8
mRatBN7.2244,291,637 - 44,374,897 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,291,989 - 44,368,955 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx251,417,505 - 51,482,408 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0249,475,942 - 49,540,776 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0244,349,547 - 44,416,361 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0244,512,556 - 44,592,793 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,512,895 - 44,592,053 (+)Ensemblrn6Rnor6.0
Rnor_5.0263,554,196 - 63,634,429 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4244,044,770 - 44,110,884 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera240,082,412 - 40,147,573 (+)NCBICelera
RGSC_v3.1243,961,910 - 44,040,250 (+)NCBI
Cytogenetic Map2q14NCBI
SLC38A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38555,625,845 - 55,712,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl555,623,437 - 55,773,194 (-)Ensemblhg38GRCh38
GRCh37554,921,673 - 55,008,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36554,957,435 - 55,043,852 (-)NCBIBuild 36Build 36hg18NCBI36
Celera551,875,777 - 51,961,881 (-)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef551,895,210 - 51,981,393 (-)NCBIHuRef
CHM1_1554,925,864 - 55,012,366 (-)NCBICHM1_1
T2T-CHM13v2.0556,453,712 - 56,540,626 (-)NCBIT2T-CHM13v2.0
Slc38a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913112,792,723 - 112,875,286 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13112,797,285 - 112,875,283 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3813112,656,189 - 112,738,752 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13112,660,751 - 112,738,749 (+)Ensemblmm10GRCm38
MGSCv3713113,450,974 - 113,528,960 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3613113,781,654 - 113,853,776 (+)NCBIMGSCv36mm8
Celera13116,969,812 - 117,051,744 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.93NCBI
Slc38a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544612,042,313 - 12,132,211 (+)Ensembl
ChiLan1.0NW_00495544612,042,848 - 12,132,211 (+)NCBIChiLan1.0ChiLan1.0
SLC38A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2458,223,410 - 58,308,449 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1556,377,185 - 56,463,038 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0558,312,101 - 58,397,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1559,936,081 - 60,020,771 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl559,944,034 - 60,020,769 (+)EnsemblpanPan2panpan1.1
SLC38A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1242,921,906 - 43,004,265 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl242,922,494 - 42,991,577 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha239,968,649 - 40,050,988 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0243,387,804 - 43,470,243 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,387,807 - 43,470,208 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1240,465,898 - 40,548,267 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0241,267,439 - 41,349,747 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0242,088,670 - 42,171,039 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc38a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,167,196 - 203,262,973 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,103,693 - 12,195,358 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648012,103,697 - 12,198,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,768,987 - 34,858,747 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11634,639,575 - 34,858,827 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21636,889,795 - 36,974,298 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1451,876,430 - 51,961,914 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl451,876,268 - 51,948,012 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666049752,110 - 837,809 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247593,606,708 - 3,706,376 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247593,603,510 - 3,707,000 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc38a9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13184,051,742 - 184,124,156 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc38a9
569 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:23
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000013218
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23675034481750344Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)23561408353462005Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)240306867124537199Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9685065Swd6Spike wave discharge measurement QTL 65.80.01brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge rate (CMO:0001739)24095742350526673Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)241801363104744824Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24490435585286097Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)244537979112567334Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23686864381868643Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)24490435589904355Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)23326999678269996Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat

Markers in Region
D10S1272E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2244,338,724 - 44,338,921 (+)MAPPERmRatBN7.2
Rnor_6.0244,559,934 - 44,560,130NCBIRnor6.0
Rnor_5.0263,601,570 - 63,601,766UniSTSRnor5.0
RGSC_v3.4244,080,644 - 44,080,840UniSTSRGSC3.4
Celera240,118,267 - 40,118,463UniSTS
Cytogenetic Map2q14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001035251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC088241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ013729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000013218   ⟹   ENSRNOP00000013218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl246,039,886 - 46,102,414 (+)Ensembl
mRatBN7.2 Ensembl244,291,989 - 44,368,955 (+)Ensembl
Rnor_6.0 Ensembl244,512,895 - 44,592,053 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000132035   ⟹   ENSRNOP00000099743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl246,024,947 - 46,105,983 (+)Ensembl
RefSeq Acc Id: NM_001035251   ⟹   NP_001030328
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,036,068 - 46,102,064 (+)NCBI
mRatBN7.2244,302,847 - 44,368,847 (+)NCBI
Rnor_6.0244,524,060 - 44,589,470 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
RGSC_v3.4244,044,770 - 44,110,884 (+)RGD
Celera240,082,412 - 40,147,573 (+)RGD
Sequence:
RefSeq Acc Id: XM_006231929   ⟹   XP_006231991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,855 - 46,102,419 (+)NCBI
mRatBN7.2244,291,637 - 44,374,897 (+)NCBI
Rnor_6.0244,512,878 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231930   ⟹   XP_006231992
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,865 - 46,102,419 (+)NCBI
mRatBN7.2244,291,707 - 44,374,897 (+)NCBI
Rnor_6.0244,512,878 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231931   ⟹   XP_006231993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,945 - 46,102,419 (+)NCBI
mRatBN7.2244,291,718 - 44,374,897 (+)NCBI
Rnor_6.0244,512,878 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231932   ⟹   XP_006231994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,025,115 - 46,102,419 (+)NCBI
mRatBN7.2244,291,895 - 44,374,897 (+)NCBI
Rnor_6.0244,513,048 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231934   ⟹   XP_006231996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,951 - 46,102,419 (+)NCBI
mRatBN7.2244,303,010 - 44,374,897 (+)NCBI
Rnor_6.0244,525,757 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231936   ⟹   XP_006231998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,951 - 46,102,419 (+)NCBI
mRatBN7.2244,303,010 - 44,374,897 (+)NCBI
Rnor_6.0244,525,757 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231937   ⟹   XP_006231999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,951 - 46,102,419 (+)NCBI
mRatBN7.2244,303,010 - 44,374,897 (+)NCBI
Rnor_6.0244,525,757 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231939   ⟹   XP_006232001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,951 - 46,102,419 (+)NCBI
mRatBN7.2244,303,010 - 44,374,897 (+)NCBI
Rnor_6.0244,525,757 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063281731   ⟹   XP_063137801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,731 - 46,102,419 (+)NCBI
RefSeq Acc Id: XM_063281732   ⟹   XP_063137802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,951 - 46,102,419 (+)NCBI
RefSeq Acc Id: XM_063281733   ⟹   XP_063137803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,951 - 46,102,419 (+)NCBI
RefSeq Acc Id: XM_063281734   ⟹   XP_063137804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,951 - 46,102,419 (+)NCBI
RefSeq Acc Id: XM_063281735   ⟹   XP_063137805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8246,024,951 - 46,102,419 (+)NCBI
RefSeq Acc Id: NP_001030328   ⟸   NM_001035251
- UniProtKB: Q561Z8 (UniProtKB/Swiss-Prot),   R9PXU2 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL),   A6I5P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231993   ⟸   XM_006231931
- Peptide Label: isoform X1
- UniProtKB: Q561Z8 (UniProtKB/Swiss-Prot),   R9PXU2 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL),   A6I5P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231992   ⟸   XM_006231930
- Peptide Label: isoform X1
- UniProtKB: Q561Z8 (UniProtKB/Swiss-Prot),   R9PXU2 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL),   A6I5P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231991   ⟸   XM_006231929
- Peptide Label: isoform X1
- UniProtKB: Q561Z8 (UniProtKB/Swiss-Prot),   R9PXU2 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL),   A6I5P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231994   ⟸   XM_006231932
- Peptide Label: isoform X1
- UniProtKB: Q561Z8 (UniProtKB/Swiss-Prot),   R9PXU2 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL),   A6I5P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231998   ⟸   XM_006231936
- Peptide Label: isoform X3
- UniProtKB: A6I5P7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232001   ⟸   XM_006231939
- Peptide Label: isoform X3
- UniProtKB: A6I5P7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231999   ⟸   XM_006231937
- Peptide Label: isoform X3
- UniProtKB: A6I5P7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231996   ⟸   XM_006231934
- Peptide Label: isoform X2
- UniProtKB: A6I5P7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013218   ⟸   ENSRNOT00000013218
RefSeq Acc Id: XP_063137801   ⟸   XM_063281731
- Peptide Label: isoform X1
- UniProtKB: R9PXU2 (UniProtKB/Swiss-Prot),   Q561Z8 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL),   A6I5P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137802   ⟸   XM_063281732
- Peptide Label: isoform X3
- UniProtKB: A6I5P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137803   ⟸   XM_063281733
- Peptide Label: isoform X3
- UniProtKB: A6I5P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137805   ⟸   XM_063281735
- Peptide Label: isoform X3
- UniProtKB: A6I5P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137804   ⟸   XM_063281734
- Peptide Label: isoform X3
- UniProtKB: A6I5P7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099743   ⟸   ENSRNOT00000132035
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3B8Q3-F1-model_v2 AlphaFold Q3B8Q3 1-559 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691136
Promoter ID:EPDNEW_R1661
Type:initiation region
Name:Slc38a9_1
Description:solute carrier family 38, member 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0244,512,974 - 44,513,034EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311881 AgrOrtholog
BioCyc Gene G2FUF-54392 BioCyc
Ensembl Genes ENSRNOG00000009851 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013218 ENTREZGENE
  ENSRNOT00000013218.7 UniProtKB/Swiss-Prot
  ENSRNOT00000132035 ENTREZGENE
IMAGE_CLONE IMAGE:7365694 IMAGE-MGC_LOAD
  IMAGE:7442690 IMAGE-MGC_LOAD
InterPro AA_transpt_TM UniProtKB/Swiss-Prot
KEGG Report rno:310091 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109589 IMAGE-MGC_LOAD
  MGC:125012 IMAGE-MGC_LOAD
NCBI Gene 310091 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/Swiss-Prot
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 9 UniProtKB/Swiss-Prot
Pfam Aa_trans UniProtKB/Swiss-Prot
PhenoGen Slc38a9 PhenoGen
RatGTEx ENSRNOG00000009851 RatGTEx
UniProt A0ABK0KY04_RAT UniProtKB/TrEMBL
  A6I5P6 ENTREZGENE, UniProtKB/TrEMBL
  A6I5P7 ENTREZGENE, UniProtKB/TrEMBL
  H9BFG3 ENTREZGENE, UniProtKB/TrEMBL
  Q3B8Q3 ENTREZGENE
  Q561Z8 ENTREZGENE
  R9PXU2 ENTREZGENE
  S38A9_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q561Z8 UniProtKB/Swiss-Prot
  R9PXU2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-11 Slc38a9  solute carrier family 38, member 9  RGD1311881  similar to hypothetical protein FLJ90709  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311881  similar to hypothetical protein FLJ90709  RGD1311881_predicted  similar to hypothetical protein FLJ90709 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311881_predicted  similar to hypothetical protein FLJ90709 (predicted)  LOC310091_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC310091_predicted  similar to hypothetical protein FLJ90709 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL