Foxred1 (FAD-dependent oxidoreductase domain containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Foxred1 (FAD-dependent oxidoreductase domain containing 1) Rattus norvegicus
Analyze
Symbol: Foxred1
Name: FAD-dependent oxidoreductase domain containing 1
RGD ID: 1311785
Description: Predicted to enable oxidoreductase activity. Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrial inner membrane. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 19. Orthologous to human FOXRED1 (FAD dependent oxidoreductase domain containing 1); INTERACTS WITH bisphenol A; cadmium dichloride; dibutyl phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FAD-dependent oxidoreductase domain-containing protein 1; hypothetical LOC315547; LOC315547; RGD1311785
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8841,789,557 - 41,818,064 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl841,808,843 - 41,817,980 (-)EnsemblGRCr8
mRatBN7.2833,551,010 - 33,560,227 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,551,013 - 33,560,192 (-)EnsemblmRatBN7.2
Rnor_6.0836,401,317 - 36,410,589 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,403,493 - 36,410,612 (-)Ensemblrn6Rnor6.0
Rnor_5.0836,420,701 - 36,428,788 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4834,985,196 - 34,986,384 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera834,970,544 - 34,979,821 (-)NCBICelera
RGSC_v3.1834,993,476 - 34,999,272 (-)NCBI
Cytogenetic Map8q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18614015   PMID:20858599   PMID:25678554  


Genomics

Comparative Map Data
Foxred1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8841,789,557 - 41,818,064 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl841,808,843 - 41,817,980 (-)EnsemblGRCr8
mRatBN7.2833,551,010 - 33,560,227 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,551,013 - 33,560,192 (-)EnsemblmRatBN7.2
Rnor_6.0836,401,317 - 36,410,589 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,403,493 - 36,410,612 (-)Ensemblrn6Rnor6.0
Rnor_5.0836,420,701 - 36,428,788 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4834,985,196 - 34,986,384 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera834,970,544 - 34,979,821 (-)NCBICelera
RGSC_v3.1834,993,476 - 34,999,272 (-)NCBI
Cytogenetic Map8q21NCBI
FOXRED1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811126,269,154 - 126,278,126 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11126,269,024 - 126,278,132 (+)Ensemblhg38GRCh38
GRCh3711126,139,049 - 126,148,021 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,644,265 - 125,653,237 (+)NCBIBuild 36Build 36hg18NCBI36
Celera11123,304,079 - 123,313,220 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11122,081,327 - 122,093,091 (+)NCBIHuRef
CHM1_111126,025,226 - 126,034,303 (+)NCBICHM1_1
T2T-CHM13v2.011126,298,638 - 126,309,536 (+)NCBIT2T-CHM13v2.0
Foxred1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,115,504 - 35,122,499 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl935,115,502 - 35,122,351 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38935,204,208 - 35,211,171 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,204,206 - 35,211,055 (-)Ensemblmm10GRCm38
MGSCv37935,011,793 - 35,018,510 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36934,953,879 - 34,960,596 (-)NCBIMGSCv36mm8
Celera932,440,923 - 32,447,642 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.08NCBI
Foxred1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541227,293,467 - 27,300,522 (+)NCBIChiLan1.0ChiLan1.0
FOXRED1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29126,952,673 - 126,965,031 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111128,060,337 - 128,072,715 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011121,083,245 - 121,096,296 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111124,993,363 - 125,005,798 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,993,070 - 125,005,798 (+)EnsemblpanPan2panpan1.1
FOXRED1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,239,740 - 8,247,341 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,240,132 - 8,247,314 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha58,300,965 - 8,308,559 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.058,195,363 - 8,202,942 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl58,195,378 - 8,202,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.158,264,961 - 8,272,555 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.058,238,707 - 8,246,268 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.058,272,899 - 8,280,455 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Foxred1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,499,870 - 108,507,053 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365725,943,186 - 5,950,502 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365725,943,309 - 5,950,476 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXRED1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,365,250 - 53,372,952 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1953,365,260 - 53,372,955 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2959,028,677 - 59,036,374 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXRED1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,394,426 - 117,404,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1117,394,587 - 117,404,258 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660438,666,968 - 8,677,791 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxred1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624812423,109 - 433,466 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624812423,000 - 429,660 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Foxred1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1830,755,875 - 30,763,176 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Foxred1
155 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:103
Interacting mature miRNAs:111
Transcripts:ENSRNOT00000013984, ENSRNOT00000037521
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625851589833Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83776085958991895Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83776085961459705Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)83412590255607752Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83910625849610361Rat

Markers in Region
RH135223  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,553,045 - 33,553,228 (+)MAPPERmRatBN7.2
Rnor_6.0836,403,352 - 36,403,534NCBIRnor6.0
Rnor_5.0836,421,535 - 36,421,717UniSTSRnor5.0
RGSC_v3.4834,984,856 - 34,985,038UniSTSRGSC3.4
Celera834,972,579 - 34,972,761UniSTS
RH 3.4 Map8289.1UniSTS
Cytogenetic Map8q21UniSTS
UniSTS:236630  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,560,453 - 33,561,647 (+)MAPPERmRatBN7.2
Rnor_6.0836,410,762 - 36,411,955NCBIRnor6.0
Rnor_5.0836,428,945 - 36,430,138UniSTSRnor5.0
RGSC_v3.4834,992,266 - 34,993,459UniSTSRGSC3.4
Celera834,979,994 - 34,981,187UniSTS
Cytogenetic Map8q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_056984496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_056984497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_085893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_348404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_348405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_593815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_602063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC160925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000091308   ⟹   ENSRNOP00000070899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl841,808,843 - 41,817,980 (-)Ensembl
mRatBN7.2 Ensembl833,552,158 - 33,560,171 (-)Ensembl
Rnor_6.0 Ensembl836,403,493 - 36,410,612 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111624   ⟹   ENSRNOP00000089602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl841,808,843 - 41,817,980 (-)Ensembl
mRatBN7.2 Ensembl833,551,013 - 33,560,192 (-)Ensembl
RefSeq Acc Id: NM_001419933   ⟹   NP_001406862
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,808,843 - 41,817,980 (-)NCBI
mRatBN7.2833,551,010 - 33,560,146 (-)NCBI
RefSeq Acc Id: XM_056984496   ⟹   XP_056840476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,789,557 - 41,818,060 (-)NCBI
mRatBN7.2833,553,276 - 33,560,226 (-)NCBI
RefSeq Acc Id: XM_056984497   ⟹   XP_056840477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,789,557 - 41,817,899 (-)NCBI
mRatBN7.2833,553,276 - 33,560,065 (-)NCBI
RefSeq Acc Id: XM_063265412   ⟹   XP_063121482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,789,557 - 41,818,064 (-)NCBI
RefSeq Acc Id: XM_063265413   ⟹   XP_063121483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,789,557 - 41,818,064 (-)NCBI
RefSeq Acc Id: XM_063265414   ⟹   XP_063121484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,789,557 - 41,818,064 (-)NCBI
RefSeq Acc Id: XM_063265415   ⟹   XP_063121485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,789,557 - 41,818,064 (-)NCBI
RefSeq Acc Id: XM_063265416   ⟹   XP_063121486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,789,557 - 41,818,064 (-)NCBI
RefSeq Acc Id: XM_063265417   ⟹   XP_063121487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,789,557 - 41,818,064 (-)NCBI
RefSeq Acc Id: XM_063265419   ⟹   XP_063121489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,789,557 - 41,815,944 (-)NCBI
RefSeq Acc Id: XM_063265420   ⟹   XP_063121490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,811,687 - 41,818,064 (-)NCBI
RefSeq Acc Id: XM_063265421   ⟹   XP_063121491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,789,557 - 41,817,004 (-)NCBI
Ensembl Acc Id: ENSRNOP00000070899   ⟸   ENSRNOT00000091308
Ensembl Acc Id: ENSRNOP00000089602   ⟸   ENSRNOT00000111624
RefSeq Acc Id: NP_001406862   ⟸   NM_001419933
- UniProtKB: D3ZEH2 (UniProtKB/TrEMBL),   A6JYJ8 (UniProtKB/TrEMBL),   A0A8I6AA73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_056840476   ⟸   XM_056984496
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AA73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_056840477   ⟸   XM_056984497
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AA73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121487   ⟸   XM_063265417
- Peptide Label: isoform X1
- UniProtKB: A6JYJ8 (UniProtKB/TrEMBL),   D3ZEH2 (UniProtKB/TrEMBL),   A0A8I6AA73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121485   ⟸   XM_063265415
- Peptide Label: isoform X1
- UniProtKB: A6JYJ8 (UniProtKB/TrEMBL),   D3ZEH2 (UniProtKB/TrEMBL),   A0A8I6AA73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121486   ⟸   XM_063265416
- Peptide Label: isoform X1
- UniProtKB: A6JYJ8 (UniProtKB/TrEMBL),   D3ZEH2 (UniProtKB/TrEMBL),   A0A8I6AA73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121484   ⟸   XM_063265414
- Peptide Label: isoform X1
- UniProtKB: A6JYJ8 (UniProtKB/TrEMBL),   D3ZEH2 (UniProtKB/TrEMBL),   A0A8I6AA73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121482   ⟸   XM_063265412
- Peptide Label: isoform X1
- UniProtKB: A6JYJ8 (UniProtKB/TrEMBL),   D3ZEH2 (UniProtKB/TrEMBL),   A0A8I6AA73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121483   ⟸   XM_063265413
- Peptide Label: isoform X1
- UniProtKB: A6JYJ8 (UniProtKB/TrEMBL),   D3ZEH2 (UniProtKB/TrEMBL),   A0A8I6AA73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121491   ⟸   XM_063265421
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063121489   ⟸   XM_063265419
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063121490   ⟸   XM_063265420
- Peptide Label: isoform X4
Protein Domains
FAD dependent oxidoreductase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEH2-F1-model_v2 AlphaFold D3ZEH2 1-487 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695846
Promoter ID:EPDNEW_R6360
Type:multiple initiation site
Name:Foxred1_1
Description:FAD-dependent oxidoreductase domain-containing protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0836,410,454 - 36,410,514EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311785 AgrOrtholog
BioCyc Gene G2FUF-31179 BioCyc
Ensembl Genes ENSRNOG00000060379 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000091308 ENTREZGENE
  ENSRNOT00000091308.3 UniProtKB/TrEMBL
  ENSRNOT00000111624.2 UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/TrEMBL
  D-Amino Acid Oxidase, subunit A, domain 2 UniProtKB/TrEMBL
InterPro FAD-dep_OxRdtase UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
NCBI Gene 315547 ENTREZGENE
PANTHER FAD-DEPENDENT OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  SARCOSINE DEHYDROGENASE-RELATED UniProtKB/TrEMBL
Pfam DAO UniProtKB/TrEMBL
PhenoGen Foxred1 PhenoGen
RatGTEx ENSRNOG00000060379 RatGTEx
Superfamily-SCOP SSF51905 UniProtKB/TrEMBL
UniProt A0A8I6AA73 ENTREZGENE, UniProtKB/TrEMBL
  A6JYJ8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZEH2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Foxred1  FAD-dependent oxidoreductase domain containing 1   Foxred1_predicted  FAD-dependent oxidoreductase domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Foxred1_predicted  FAD-dependent oxidoreductase domain containing 1 (predicted)  RGD1311785_predicted  hypothetical LOC315547 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1311785_predicted  hypothetical LOC315547 (predicted)  LOC315547_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315547_predicted  hypothetical LOC315547 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL