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Gene: Foxj3 (forkhead box J3) Rattus norvegicus

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Symbol:

Foxj3

Name:

forkhead box J3

RGD ID:

1311770

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in male meiosis I; positive regulation of transcription by RNA polymerase II; and spermatogenesis. Predicted to be active in nucleus. Orthologous to human FOXJ3 (forkhead box J3); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

forkhead box protein J3; LOC313554

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FOXJ3 (forkhead box J3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Foxj3 (forkhead box J3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Foxj3 (forkhead box J3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FOXJ3 (forkhead box J3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FOXJ3 (forkhead box J3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Foxj3 (forkhead box J3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FOXJ3 (forkhead box J3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FOXJ3 (forkhead box J3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Foxj3 (forkhead box J3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Foxj3 (forkhead box J3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FOXJ3 (forkhead box J3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Foxj3 (forkhead box J3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	foxj3 (forkhead box J3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	FKH1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Saccharomyces cerevisiae (baker's yeast):	FKH2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	fd102C	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Xenopus tropicalis (tropical clawed frog):	foxj3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	foxj3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	138,425,623 - 138,513,760 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	138,424,923 - 138,513,760 (+)	Ensembl				GRCr8
mRatBN7.2	5	133,140,344 - 133,228,489 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	133,140,884 - 133,228,489 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	135,869,276 - 135,957,126 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	137,625,720 - 137,713,566 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	137,646,321 - 137,734,171 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	138,587,968 - 138,676,948 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	138,605,793 - 138,676,962 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	142,408,836 - 142,478,023 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	140,128,528 - 140,218,617 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	131,664,387 - 131,751,888 (+)	NCBI		Celera
RGSC_v3.1	5	140,138,244 - 140,221,538 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

captan (ISO)

carbon nanotube (ISO)

coumarin (ISO)

cyclosporin A (ISO)

DDT (EXP)

deguelin (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

ethanol (ISO)

fluoranthene (ISO)

folic acid (ISO)

folpet (ISO)

FR900359 (ISO)

geraniol (ISO)

GSK-J4 (ISO)

leflunomide (ISO)

menadione (ISO)

methotrexate (ISO)

oxaliplatin (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

topotecan (EXP)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

male meiosis I (IEA,ISO)

meiotic cell cycle (IEA)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

spermatogenesis (ISO)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific DNA binding (IEA,ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22740631	PMID:23332764

Genomics

Comparative Map Data

Foxj3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	138,425,623 - 138,513,760 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	138,424,923 - 138,513,760 (+)	Ensembl				GRCr8
mRatBN7.2	5	133,140,344 - 133,228,489 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	133,140,884 - 133,228,489 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	135,869,276 - 135,957,126 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	137,625,720 - 137,713,566 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	137,646,321 - 137,734,171 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	138,587,968 - 138,676,948 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	138,605,793 - 138,676,962 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	142,408,836 - 142,478,023 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	140,128,528 - 140,218,617 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	131,664,387 - 131,751,888 (+)	NCBI		Celera
RGSC_v3.1	5	140,138,244 - 140,221,538 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

FOXJ3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	42,176,548 - 42,335,880 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	42,176,535 - 42,335,913 (-)	Ensembl			hg38	GRCh38
GRCh37	1	42,642,219 - 42,801,551 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	42,414,797 - 42,573,490 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	42,311,303 - 42,469,996	NCBI
Celera	1	40,924,186 - 41,082,831 (-)	NCBI		Celera
Cytogenetic Map	1	p34.2	NCBI
HuRef	1	40,761,789 - 40,921,534 (-)	NCBI		HuRef
CHM1_1	1	42,759,333 - 42,918,449 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	42,047,196 - 42,206,280 (-)	NCBI		T2T-CHM13v2.0

Foxj3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	119,396,858 - 119,486,316 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	119,394,201 - 119,486,316 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	119,539,661 - 119,629,119 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	119,537,004 - 119,629,119 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	119,212,293 - 119,301,724 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	119,037,620 - 119,127,051 (+)	NCBI		MGSCv36	mm8
Celera	4	118,293,080 - 118,361,897 (+)	NCBI		Celera
Cytogenetic Map	4	D2.1	NCBI
cM Map	4	55.43	NCBI

Foxj3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955537	1,816,241 - 1,936,380 (-)	Ensembl
ChiLan1.0	NW_004955537	1,816,431 - 1,936,380 (-)	NCBI	ChiLan1.0	ChiLan1.0

FOXJ3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	184,476,740 - 184,636,304 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	183,615,251 - 183,778,420 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	41,475,482 - 41,637,478 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	42,855,060 - 43,017,611 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	42,855,058 - 42,992,584 (-)	Ensembl			panPan2	panpan1.1

FOXJ3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	941,301 - 1,081,389 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	941,274 - 1,078,563 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	1,196,546 - 1,338,551 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	1,023,337 - 1,168,946 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	1,023,148 - 1,168,939 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	932,281 - 1,074,116 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	993,939 - 1,135,847 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	1,008,907 - 1,150,747 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Foxj3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	57,830,143 - 57,940,173 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	23,652,398 - 23,764,969 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	23,654,925 - 23,764,965 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FOXJ3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	168,994,494 - 169,135,040 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	168,994,432 - 169,135,038 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

FOXJ3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	90,597,016 - 90,746,777 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	90,621,037 - 90,746,784 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	26,160,690 - 26,310,788 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Foxj3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624892	1,523,475 - 1,641,322 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624892	1,523,554 - 1,641,330 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Foxj3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	37,346,975 - 37,430,506 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Foxj3
520 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	92
Count of miRNA genes:	81
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000011683
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
2303586	Gluco52	Glucose level QTL 52	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	100826632	145826632	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	130678987	145274255	Rat
7365049	Bp359	Blood pressure QTL 359			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133308734	140009902	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	98972960	143972960	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2303618	Vencon1	Ventilatory control QTL 1	3.8		respiration trait (VT:0001943)	oxygen consumption (CMO:0002169)	5	100826632	145826632	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	94034903	139034903	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

RH142254

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	133,228,199 - 133,228,365 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	138,676,659 - 138,676,824	NCBI	Rnor6.0
Rnor_5.0	5	142,478,953 - 142,479,118	UniSTS	Rnor5.0
RGSC_v3.4	5	140,218,329 - 140,218,494	UniSTS	RGSC3.4
Celera	5	131,751,599 - 131,751,764	UniSTS
RH 3.4 Map	5	875.5	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH137155

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	133,139,331 - 133,139,547 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	138,586,391 - 138,586,606	NCBI	Rnor6.0
Rnor_5.0	5	142,390,385 - 142,390,600	UniSTS	Rnor5.0
RGSC_v3.4	5	140,126,440 - 140,126,655	UniSTS	RGSC3.4
Celera	5	131,662,818 - 131,663,033	UniSTS
RH 3.4 Map	5	866.1	UniSTS
Cytogenetic Map	5	q36	UniSTS

UniSTS:235016

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	133,225,840 - 133,226,063 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	138,674,300 - 138,674,522	NCBI	Rnor6.0
Rnor_5.0	5	142,476,983 - 142,477,205	UniSTS	Rnor5.0
RGSC_v3.4	5	140,215,994 - 140,216,216	UniSTS	RGSC3.4
Celera	5	131,749,612 - 131,749,834	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000083754 ⟹ ENSRNOP00000069938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	138,425,973 - 138,513,760 (+)	Ensembl
mRatBN7.2 Ensembl	5	133,140,884 - 133,228,489 (+)	Ensembl
Rnor_6.0 Ensembl	5	138,605,793 - 138,676,962 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103629 ⟹ ENSRNOP00000096130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	138,425,602 - 138,513,759 (+)	Ensembl
mRatBN7.2 Ensembl	5	133,140,884 - 133,228,489 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105044 ⟹ ENSRNOP00000081502

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	138,425,602 - 138,475,158 (+)	Ensembl
mRatBN7.2 Ensembl	5	133,140,884 - 133,190,354 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123874 ⟹ ENSRNOP00000108127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	138,425,602 - 138,513,759 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127482 ⟹ ENSRNOP00000106702

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	138,424,923 - 138,513,758 (+)	Ensembl

RefSeq Acc Id:

NM_001107971 ⟹ NP_001101441

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,426,163 - 138,513,760 (+)	NCBI
mRatBN7.2	5	133,140,884 - 133,228,489 (+)	NCBI
Rnor_6.0	5	138,587,968 - 138,676,948 (+)	NCBI
Rnor_5.0	5	142,408,836 - 142,478,023 (+)	NCBI
RGSC_v3.4	5	140,128,528 - 140,218,617 (+)	RGD
Celera	5	131,664,387 - 131,751,888 (+)	NCBI

Sequence:

show sequence

GCCTCGTGGGCCGCGGGTACCCTGCGGGGGTGAGGAGGCTGGGGCGAGGGTCCCATCTTCTGTC
CTATCCTGTCCCTGCGTCCTTCTCTGGCATTGGGGCAAAGGCAGACTTCGCATGCGGACGTGTT
GCTGCTGTCCTGCGTGTGTTGCATCCTGCCCACGTGGTAGTGTCCCGTCCCTCCCACCCCGTCC
ATTTTTTGCAGTTGGTCAAGATGTTTTTCCCTCGTGCTTTACCCCCCGTCTACCCTGTGATTTC
TTCTGGGCAGCGTGGAAGATGTTAAGATTCTCTTTGTGGCCAGATGGGTTTGTATGGACAAGCC
TGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCCTAACATCTATGGACT
GGTTACCACAGCTTACTATGAGAGCAGCCATCCAAAAATCTGATGCCACACAAAATGCACATGG
AACGGGAATTTCTAAGAAGAATGCACTCCTTGACCCAAATACAACGCTAGACCAGGAAGAAGTC
CAACAGCACAAAGATGGAAAGCCTCCGTACAGCTATGCCAGCCTCATCACGTTTGCAATTAATA
GCTCACCTAAAAAGAAAATGACGTTAAGTGAGATTTACCAGTGGATTTGTGATAACTTTCCGTA
TTACAGAGAGGCTGGCAGTGGTTGGAAGAATTCCATACGGCATAATCTGTCACTGAACAAATGT
TTCCTTAAAGTGCCTCGATCCAAGGATGATCCCGGAAAGGGTTCTTACTGGGCCATAGACACCA
ATCCGAAGGAAGACACGCTGCCTACCCGGCCAAAGAAGAGGGCAAGATCTGTAGAACGGGCCTC
AACTCCATATAGCATAGATTCAGATTCTTTGGGAATGGAGTGTATTATTTCGGGAAGTGCCTCT
CCAACTCTGGCAATCAACACTGTGACTAACAAAGTAACATTGTACAACACTGATCAGGATGGTA
GTGACAGCCCTCGGAGCAGCCTTAACAACAGTCTCTCAGACCAGAGTTTGGCGTCTGTTAATTT
GAACAGTGTGGGAAGTGTACATAGTTATACACCGGTCACTAACCATCCAGAACCAGTCTCTCAA
TCACTAACGCCTCAGCAGCAGCCGCAGTACAACCTTCCAGAACGAGATAAACAACTGCTTTTCA
CAGAATACAATTTTGAAGATCTTAGTGCCTCGTTTCGGAGTCTGTATAAGTCAGTTTTTGAGCA
ATCACTTAGTCAACAAGGTTTAATGAGCATCCCTTCGGAATCTTCCCAACAGTCCCATACTTCA
TGTTCCTATCAGCACTCTCCTAGCAGTACAGTGACCTCTCACCCTCACAGCAACCAAAGCAGCC
TGCCCAACAATCATAGTGGCCTCAGTGCCACAGGTAGTAATTCGGTTGCACAGGTCTCGCTGTC
CCACCCCCAGATGCACACACAGCCCTCTCCACATACACCCCATAGACCGCATGGTTTACCACAG
CACCCACAGCGTCCCCAGCACCCAGCATCACACCCACAGCAACACAGCCAGCTACAGCCGCCTC
ACTCCCAGCACCCCCCTCCACATCAGCACATACAACACCATCCAAACCATCAGCACCAGACGTT
AGCGCATCAGCCACCACCACCCCCTCAACAGGTATCCTGTAATTCTGGTGTTTCAAGCGACTGG
TATGCAACACTCGATATGCTGAAGGAAAGCTGTCGAATTGCCAGCAGTGTTAACTGGTCAGACG
TAGACCTTTCACAGTTCCAAGGTCTGATGGAGAGTATGCGGCAGGCGGATCTCAAGAACTGGTC
CTTAGATCAGGTTCAGTTCGCTGACCTCTGTTCCTCTCTGAATCAGTTCTTCACACAGACGGGC
CTTATCCACTCACAGAGTAATGCTCAGCAGAATGTCTGTCATGGTGCCATGCACCCAGCAAAAC
CTTCCCAACACATCGGGGCAGGAAATTTGTACATAGATTCCAGGCAAAGTGGAATCCCTCCCTC
AGTGATGCCACCCCCTGGTTATCCTCATATTCCACAGGCGCTCAACACTCCAGGAACTACGATG
GCAGGCCATCACGGAGCCATGAACCAGCAGCACATGATGCCTTCCCAAGCCTTCCAGATGCGGC
GCTCTCTGCCTCCAGATGACATCCAGGATGACTTTGATTGGGATTCAATAGTGTAGGCTTGTCT
CTGCAAGACAGCAGACTCCAGCATCCTTTTTGTTCAGTGAAAGGAAGGATTAGAGTCCGGTTGA
GAAAACAAAGCAGTTACCAGTGCTATCTAAATTCCTTTTGAAGACAATCAGAGATTCTAGCTGG
GTAACTTACTGCTTTCATCCAACCCAAGCAAGAACTACATGTTTGTCTCCCCGCCAGCACCCTC
TGTAGCTTCTGACTGTTGTGATTTGGACAGCTTTTTGCATATTTGTGTCAGTTTGATGTTGACC
ACAAGTGCCAGACTGATTTTTCAGACAGAGCCTATTTTGCTGCGAGCAGTTTATAGATACATGT
GTAAATATGTGTACAAATATTACTGAAAGGCTTCAAGTTTTTTCTAATTGGATTATTGTATCTT
GAAAGGAAAGTTATTGTCAGTTTTTATTCCTTGTTAGGCCATTTTCTGCAGGATGCTTTCAAAT
GATACAGAGAGCTGAAAGGAAATTGGCTTCCCAAAGCCCAGTTTCCTTTATTTAATCTCCAGAG
GTAGGAGCAATCATGAATTCCACCGAGTAAGTCAAGAATCTGGAGTTGGCACTCTCAGCAGTGC
AGAGGGTCTGTGGTTCCTGAGCAAGCTTGTAGTGCAGGGTGTGAGAGTGCTGTACCCGGTCAGC
GTGACTCCTCAGCCGCATTCTGACAGCTCTGAAGTGTGTGGGCGGATTGAAACTAGGTATTGCT
TGGCTCTTCAAACAAATCACGTCTCCATACTCACTTATGTATTTATTATTCAAAAGTGTTATTT
TAATATTTATTGCTACTTTCTGTGAATGCACAGCGCTGTTGGATTCACTAGGGAGGAATTTGTC
TGAGAGCATGGTTATTTTTCTGGATAAAAGTTTACAAACAAAGACAATCAGAAACATTTGTCCT
TCTCTTTACCATCACTCTTTACCAGGTAGTGTGCTTCCCGCCTTACCTAGCCTTCCTGCTGGTG
GAGAGTTAATAAATAGCTAAATAAGAATTTTCTGGAATTTGAATCAGTCTATTTAGGTAGCAAG
ACACAGAAGCTGGAGTTATACAGCAGTGTCCTTGCTGTTGTTGGTAACGCTAGCAGGGGCTTTG
CATGCAGCTCCAGAGTCCATCTGCGTCAGTCTCGAGTGCAGTGACTGCGTGACCTGCTGTTGGG
TCTGTGTGTGTATCCCTGACAAGAAGCACCTCAGAGCTTTATCAGTTGCTTTGTTTTGTGTCGT
GTCACAGCTTGCATGGGTTGATTGTGTTGATTGTGTTGATTTTTTAATGAAAGTAAAGAAAGGA
GATTCTCCTCCCCACAGAGAATAGATTGTTAATTGGTTCTTTACAGAGGGGGAAAATCTGTTTT
AATGAGGAAAATAGATTCTGTCAAATCAAAGGAGAAATAACTGGTCACCAGTTGCTTGTATTGT
CTCTGGGCTCAGTAAATGCTTAATCACGTTAACTAACCTCAGTGAGTCATGTGGATGAGTAATC
TCTACTTGAACAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TTGGAGAGACAGAGAGAGAGAATATGAATATCTGTGTATGTATTAATGGAGTATTGTCTTGAAT
GAATCGCTGGGAAGCCATGGTAGTACTGGGAAAAAGGGAGAGCCTCGAGCTTCTCTTGTTGTTT
AGTCCCCCACTTGGCATGAGAAGAAGCTCAGGTATATCCCCTTGGGTTAGTGAAAATCAGAGGA
TTCTCAAACAATAGCCAACAGGCCTCTCTCAGAAGGACCAGGCAAGATGAGATGACTCCCTGCA
GAGGAACAGATTGGGAAAATGAGGCCCCAGAAGTTTACTCCGTCTGTTTTCTAGATACCACAGT
GGCTGCTCCCTGACTAGGGTCGATGCTCAGCAGTGTGCACTTTAAGTGATTGCAGCCCATGAAA
CAGCACTGCTTGATGAGCTTACAAATCACGTGAAGCTGATTTCCCATTTGGCAGTTGTTTGCTG
ATTTGCAGTGATCCGTATGGTTATGAACGTTTAAACTGACCAGGAATGGCACCAAAGGACAGAC
TCACTACTGTCTGAGATTCCCTGTTCCCCAGGGGCTCAGCAAGTCTGAGTGGCCCTGCAGGGAG
GGCTAGCTGCTGGGTGCAGAGTCCCTCTAGTGGCCATTTCTGTTGTTATTCGACGACACATAGC
AAGTTCTCTTGGGCTTAAATTGACTGGAGACTTTGGGGTAAAGACTAATAACCGTACATACACA
GGTGGGGTGCTCTGTCCAAGAGAAGAGTCCGACTGGCATTTGTGGCAGTGTTTGAAATGTAAAT
GTGCTCCTGTGTGTTCCTGTAAATATTTAATACGTGTCTCAGACGCCCTTTGAAGTGGGAGGGG
ATCGATCTTGGGAATATTTCAAATGGAATAGAGTATTTTGATATGTTCATTGGAAGGGTGACGT
GTACATACTTCTGTTGTATATACGTGGTGACATGCATTGGCTTTTGTGCAGAAACAACCTGCTC
TCTGTGCTGCTGTTGGACAGTCAGTGTTTTAATGTTTCTACAGTTTTCCTATTGCACGATTTCA
TATTCTGCCAATGGTGAGTGGCACCCATTCTTTGTAACTGTTTAGTGCTGTAAAGACATATTCC
AAGTGTCATTAGGATTGTCGCTGCCAGAACTGATATGCATGGATGGCACTTAAAATAAATATAT
TATGACTGTA

hide sequence

RefSeq Acc Id:

XM_039110006 ⟹ XP_038965934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,425,623 - 138,513,760 (+)	NCBI
mRatBN7.2	5	133,140,344 - 133,228,489 (+)	NCBI

RefSeq Acc Id:

XM_039110007 ⟹ XP_038965935

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,425,624 - 138,513,760 (+)	NCBI
mRatBN7.2	5	133,140,345 - 133,228,489 (+)	NCBI

RefSeq Acc Id:

XM_039110008 ⟹ XP_038965936

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,425,900 - 138,513,760 (+)	NCBI
mRatBN7.2	5	133,140,649 - 133,228,489 (+)	NCBI

RefSeq Acc Id:

XM_039110009 ⟹ XP_038965937

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,425,623 - 138,513,760 (+)	NCBI
mRatBN7.2	5	133,140,344 - 133,228,489 (+)	NCBI

RefSeq Acc Id:

XM_063287744 ⟹ XP_063143814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,425,624 - 138,513,760 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101441	(Get FASTA)	NCBI Sequence Viewer
	XP_038965934	(Get FASTA)	NCBI Sequence Viewer
	XP_038965935	(Get FASTA)	NCBI Sequence Viewer
	XP_038965936	(Get FASTA)	NCBI Sequence Viewer
	XP_038965937	(Get FASTA)	NCBI Sequence Viewer
	XP_063143814	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL90108	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069938
	ENSRNOP00000069938.3
	ENSRNOP00000081502.1
	ENSRNOP00000096130
	ENSRNOP00000096130.2
	ENSRNOP00000106702.1
	ENSRNOP00000108127.1

RefSeq Acc Id:

NP_001101441 ⟸ NM_001107971

- UniProtKB:

A0A0G2JWM4 (UniProtKB/TrEMBL), A6JZP5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALLDPNT
TLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRH
NLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDTLPTRPKKRARSVERASTPYSIDSDSLGMEC
IISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSLASVNLNSVGSVHSYTPVTN
HPEPVSQSLTPQQQPQYNLPERDKQLLFTEYNFEDLSASFRSLYKSVFEQSLSQQGLMSIPSES
SQQSHTSCSYQHSPSSTVTSHPHSNQSSLPNNHSGLSATGSNSVAQVSLSHPQMHTQPSPHTPH
RPHGLPQHPQRPQHPASHPQQHSQLQPPHSQHPPPHQHIQHHPNHQHQTLAHQPPPPPQQVSCN
SGVSSDWYATLDMLKESCRIASSVNWSDVDLSQFQGLMESMRQADLKNWSLDQVQFADLCSSLN
QFFTQTGLIHSQSNAQQNVCHGAMHPAKPSQHIGAGNLYIDSRQSGIPPSVMPPPGYPHIPQAL
NTPGTTMAGHHGAMNQQHMMPSQAFQMRRSLPPDDIQDDFDWDSIV

hide sequence

Ensembl Acc Id:

ENSRNOP00000069938 ⟸ ENSRNOT00000083754

RefSeq Acc Id:	XP_038965934 ⟸ XM_039110006
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JWM4 (UniProtKB/TrEMBL), A6JZP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965937 ⟸ XM_039110009
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AQ64 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965935 ⟸ XM_039110007
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JWM4 (UniProtKB/TrEMBL), A6JZP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965936 ⟸ XM_039110008
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JWM4 (UniProtKB/TrEMBL), A6JZP5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000081502 ⟸ ENSRNOT00000105044

Ensembl Acc Id:

ENSRNOP00000096130 ⟸ ENSRNOT00000103629

RefSeq Acc Id:	XP_063143814 ⟸ XM_063287744
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AQ64 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000108127 ⟸ ENSRNOT00000123874

Ensembl Acc Id:

ENSRNOP00000106702 ⟸ ENSRNOT00000127482

Protein Domains

Fork-head

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JWM4-F1-model_v2	AlphaFold	A0A0G2JWM4	1-635	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311770	AgrOrtholog
BioCyc Gene	G2FUF-40083	BioCyc
Ensembl Genes	ENSRNOG00000061851	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000083754	ENTREZGENE
	ENSRNOT00000083754.3	UniProtKB/TrEMBL
	ENSRNOT00000103629	ENTREZGENE
	ENSRNOT00000103629.2	UniProtKB/TrEMBL
	ENSRNOT00000105044.2	UniProtKB/TrEMBL
	ENSRNOT00000123874.1	UniProtKB/TrEMBL
	ENSRNOT00000127482.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	FOXJ2/3-like	UniProtKB/TrEMBL
	TF_fork_head	UniProtKB/TrEMBL
	TF_fork_head_CS	UniProtKB/TrEMBL
	TF_fork_head_CS_2	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	rno:313554	UniProtKB/TrEMBL
NCBI Gene	313554	ENTREZGENE
PANTHER	FORKHEAD BOX PROTEIN J3	UniProtKB/TrEMBL
	PTHR46078	UniProtKB/TrEMBL
Pfam	Fork_head	UniProtKB/TrEMBL
PhenoGen	Foxj3	PhenoGen
PRINTS	FORKHEAD	UniProtKB/TrEMBL
PROSITE	FORK_HEAD_1	UniProtKB/TrEMBL
	FORK_HEAD_2	UniProtKB/TrEMBL
	FORK_HEAD_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000061851	RatGTEx
SMART	SM00339	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A0G2JWM4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZT28_RAT	UniProtKB/TrEMBL
	A0A8I6AQ64	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LWJ7_RAT	UniProtKB/TrEMBL
	A0ABK0LZU2_RAT	UniProtKB/TrEMBL
	A6JZP5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Foxj3	forkhead box J3	Foxj3_predicted	forkhead box J3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Foxj3_predicted	forkhead box J3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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